Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4510 and Echvi_4511 are separated by 9 nucleotides Echvi_4511 and Echvi_4512 are separated by 324 nucleotides
Echvi_4510: Echvi_4510 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 5,385,776 to 5,386,987
_4510
Echvi_4511: Echvi_4511 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 5,386,997 to 5,387,986
_4511
Echvi_4512: Echvi_4512 - Transposase domain (DUF772)., at 5,388,311 to 5,389,679
_4512
Position (kb)
5386
5387
5388 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5386.080 kb on + strand, within Echvi_4510 at 5386.101 kb on + strand, within Echvi_4510 at 5386.102 kb on - strand, within Echvi_4510 at 5386.228 kb on + strand, within Echvi_4510 at 5386.228 kb on + strand, within Echvi_4510 at 5386.228 kb on + strand, within Echvi_4510 at 5386.229 kb on - strand, within Echvi_4510 at 5386.229 kb on - strand, within Echvi_4510 at 5386.371 kb on + strand, within Echvi_4510 at 5386.371 kb on + strand, within Echvi_4510 at 5386.412 kb on + strand, within Echvi_4510 at 5386.498 kb on - strand, within Echvi_4510 at 5386.633 kb on - strand, within Echvi_4510 at 5386.765 kb on + strand, within Echvi_4510 at 5386.784 kb on + strand, within Echvi_4510 at 5386.996 kb on - strand at 5387.009 kb on - strand at 5387.030 kb on - strand at 5387.080 kb on + strand at 5387.141 kb on - strand, within Echvi_4511 at 5387.161 kb on - strand, within Echvi_4511 at 5387.198 kb on + strand, within Echvi_4511 at 5387.199 kb on - strand, within Echvi_4511 at 5387.199 kb on - strand, within Echvi_4511 at 5387.211 kb on + strand, within Echvi_4511 at 5387.396 kb on - strand, within Echvi_4511 at 5387.396 kb on - strand, within Echvi_4511 at 5387.396 kb on - strand, within Echvi_4511 at 5387.405 kb on + strand, within Echvi_4511 at 5387.409 kb on - strand, within Echvi_4511 at 5387.452 kb on - strand, within Echvi_4511 at 5387.527 kb on - strand, within Echvi_4511 at 5387.529 kb on + strand, within Echvi_4511 at 5387.530 kb on - strand, within Echvi_4511 at 5387.570 kb on + strand, within Echvi_4511 at 5387.602 kb on - strand, within Echvi_4511 at 5387.602 kb on - strand, within Echvi_4511 at 5387.602 kb on - strand, within Echvi_4511 at 5387.615 kb on + strand, within Echvi_4511 at 5387.627 kb on + strand, within Echvi_4511 at 5387.628 kb on - strand, within Echvi_4511 at 5387.760 kb on - strand, within Echvi_4511 at 5387.886 kb on + strand, within Echvi_4511 at 5387.984 kb on + strand at 5387.984 kb on + strand at 5388.026 kb on + strand at 5388.027 kb on - strand at 5388.132 kb on - strand at 5388.132 kb on - strand at 5388.144 kb on + strand at 5388.144 kb on + strand at 5388.145 kb on - strand at 5388.145 kb on - strand at 5388.145 kb on - strand at 5388.145 kb on - strand at 5388.185 kb on + strand at 5388.185 kb on + strand at 5388.186 kb on - strand at 5388.186 kb on - strand at 5388.186 kb on - strand at 5388.187 kb on + strand at 5388.203 kb on - strand at 5388.211 kb on - strand at 5388.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 5,386,080 + Echvi_4510 0.25 +0.3 5,386,101 + Echvi_4510 0.27 +1.8 5,386,102 - Echvi_4510 0.27 +0.5 5,386,228 + Echvi_4510 0.37 +0.2 5,386,228 + Echvi_4510 0.37 +1.2 5,386,228 + Echvi_4510 0.37 -2.4 5,386,229 - Echvi_4510 0.37 -2.3 5,386,229 - Echvi_4510 0.37 -0.9 5,386,371 + Echvi_4510 0.49 -0.5 5,386,371 + Echvi_4510 0.49 +0.9 5,386,412 + Echvi_4510 0.52 +1.6 5,386,498 - Echvi_4510 0.60 +2.6 5,386,633 - Echvi_4510 0.71 -0.1 5,386,765 + Echvi_4510 0.82 -2.9 5,386,784 + Echvi_4510 0.83 -2.5 5,386,996 - +0.3 5,387,009 - +0.9 5,387,030 - -0.6 5,387,080 + -1.9 5,387,141 - Echvi_4511 0.15 -0.1 5,387,161 - Echvi_4511 0.17 -0.1 5,387,198 + Echvi_4511 0.20 +2.2 5,387,199 - Echvi_4511 0.20 +1.6 5,387,199 - Echvi_4511 0.20 +4.1 5,387,211 + Echvi_4511 0.22 +2.2 5,387,396 - Echvi_4511 0.40 +0.2 5,387,396 - Echvi_4511 0.40 +1.4 5,387,396 - Echvi_4511 0.40 -1.5 5,387,405 + Echvi_4511 0.41 -0.7 5,387,409 - Echvi_4511 0.42 +1.9 5,387,452 - Echvi_4511 0.46 -1.2 5,387,527 - Echvi_4511 0.54 -1.8 5,387,529 + Echvi_4511 0.54 -0.8 5,387,530 - Echvi_4511 0.54 -1.0 5,387,570 + Echvi_4511 0.58 -0.3 5,387,602 - Echvi_4511 0.61 -0.6 5,387,602 - Echvi_4511 0.61 +1.0 5,387,602 - Echvi_4511 0.61 +1.3 5,387,615 + Echvi_4511 0.62 +0.2 5,387,627 + Echvi_4511 0.64 +0.4 5,387,628 - Echvi_4511 0.64 +0.2 5,387,760 - Echvi_4511 0.77 +0.6 5,387,886 + Echvi_4511 0.90 +0.5 5,387,984 + +1.0 5,387,984 + -0.4 5,388,026 + +0.4 5,388,027 - +3.4 5,388,132 - -2.2 5,388,132 - +1.5 5,388,144 + +1.3 5,388,144 + -0.7 5,388,145 - -0.7 5,388,145 - +1.9 5,388,145 - +1.0 5,388,145 - -0.6 5,388,185 + -0.1 5,388,185 + -0.7 5,388,186 - -0.4 5,388,186 - +0.8 5,388,186 - +0.3 5,388,187 + +0.5 5,388,203 - -0.1 5,388,211 - -1.2 5,388,345 + -1.8
Or see this region's nucleotide sequence