Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4511

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4510 and Echvi_4511 are separated by 9 nucleotidesEchvi_4511 and Echvi_4512 are separated by 324 nucleotides Echvi_4510: Echvi_4510 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 5,385,776 to 5,386,987 _4510 Echvi_4511: Echvi_4511 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 5,386,997 to 5,387,986 _4511 Echvi_4512: Echvi_4512 - Transposase domain (DUF772)., at 5,388,311 to 5,389,679 _4512 Position (kb) 5386 5387 5388Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5386.080 kb on + strand, within Echvi_4510at 5386.101 kb on + strand, within Echvi_4510at 5386.102 kb on - strand, within Echvi_4510at 5386.228 kb on + strand, within Echvi_4510at 5386.228 kb on + strand, within Echvi_4510at 5386.228 kb on + strand, within Echvi_4510at 5386.229 kb on - strand, within Echvi_4510at 5386.229 kb on - strand, within Echvi_4510at 5386.371 kb on + strand, within Echvi_4510at 5386.371 kb on + strand, within Echvi_4510at 5386.412 kb on + strand, within Echvi_4510at 5386.498 kb on - strand, within Echvi_4510at 5386.633 kb on - strand, within Echvi_4510at 5386.765 kb on + strand, within Echvi_4510at 5386.784 kb on + strand, within Echvi_4510at 5386.996 kb on - strandat 5387.009 kb on - strandat 5387.030 kb on - strandat 5387.080 kb on + strandat 5387.141 kb on - strand, within Echvi_4511at 5387.161 kb on - strand, within Echvi_4511at 5387.198 kb on + strand, within Echvi_4511at 5387.199 kb on - strand, within Echvi_4511at 5387.199 kb on - strand, within Echvi_4511at 5387.211 kb on + strand, within Echvi_4511at 5387.396 kb on - strand, within Echvi_4511at 5387.396 kb on - strand, within Echvi_4511at 5387.396 kb on - strand, within Echvi_4511at 5387.405 kb on + strand, within Echvi_4511at 5387.409 kb on - strand, within Echvi_4511at 5387.452 kb on - strand, within Echvi_4511at 5387.527 kb on - strand, within Echvi_4511at 5387.529 kb on + strand, within Echvi_4511at 5387.530 kb on - strand, within Echvi_4511at 5387.570 kb on + strand, within Echvi_4511at 5387.602 kb on - strand, within Echvi_4511at 5387.602 kb on - strand, within Echvi_4511at 5387.602 kb on - strand, within Echvi_4511at 5387.615 kb on + strand, within Echvi_4511at 5387.627 kb on + strand, within Echvi_4511at 5387.628 kb on - strand, within Echvi_4511at 5387.760 kb on - strand, within Echvi_4511at 5387.886 kb on + strand, within Echvi_4511at 5387.984 kb on + strandat 5387.984 kb on + strandat 5388.026 kb on + strandat 5388.027 kb on - strandat 5388.132 kb on - strandat 5388.132 kb on - strandat 5388.144 kb on + strandat 5388.144 kb on + strandat 5388.145 kb on - strandat 5388.145 kb on - strandat 5388.145 kb on - strandat 5388.145 kb on - strandat 5388.185 kb on + strandat 5388.185 kb on + strandat 5388.186 kb on - strandat 5388.186 kb on - strandat 5388.186 kb on - strandat 5388.187 kb on + strandat 5388.203 kb on - strandat 5388.211 kb on - strandat 5388.345 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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5,386,080 + Echvi_4510 0.25 +0.3
5,386,101 + Echvi_4510 0.27 +1.8
5,386,102 - Echvi_4510 0.27 +0.5
5,386,228 + Echvi_4510 0.37 +0.2
5,386,228 + Echvi_4510 0.37 +1.2
5,386,228 + Echvi_4510 0.37 -2.4
5,386,229 - Echvi_4510 0.37 -2.3
5,386,229 - Echvi_4510 0.37 -0.9
5,386,371 + Echvi_4510 0.49 -0.5
5,386,371 + Echvi_4510 0.49 +0.9
5,386,412 + Echvi_4510 0.52 +1.6
5,386,498 - Echvi_4510 0.60 +2.6
5,386,633 - Echvi_4510 0.71 -0.1
5,386,765 + Echvi_4510 0.82 -2.9
5,386,784 + Echvi_4510 0.83 -2.5
5,386,996 - +0.3
5,387,009 - +0.9
5,387,030 - -0.6
5,387,080 + -1.9
5,387,141 - Echvi_4511 0.15 -0.1
5,387,161 - Echvi_4511 0.17 -0.1
5,387,198 + Echvi_4511 0.20 +2.2
5,387,199 - Echvi_4511 0.20 +1.6
5,387,199 - Echvi_4511 0.20 +4.1
5,387,211 + Echvi_4511 0.22 +2.2
5,387,396 - Echvi_4511 0.40 +0.2
5,387,396 - Echvi_4511 0.40 +1.4
5,387,396 - Echvi_4511 0.40 -1.5
5,387,405 + Echvi_4511 0.41 -0.7
5,387,409 - Echvi_4511 0.42 +1.9
5,387,452 - Echvi_4511 0.46 -1.2
5,387,527 - Echvi_4511 0.54 -1.8
5,387,529 + Echvi_4511 0.54 -0.8
5,387,530 - Echvi_4511 0.54 -1.0
5,387,570 + Echvi_4511 0.58 -0.3
5,387,602 - Echvi_4511 0.61 -0.6
5,387,602 - Echvi_4511 0.61 +1.0
5,387,602 - Echvi_4511 0.61 +1.3
5,387,615 + Echvi_4511 0.62 +0.2
5,387,627 + Echvi_4511 0.64 +0.4
5,387,628 - Echvi_4511 0.64 +0.2
5,387,760 - Echvi_4511 0.77 +0.6
5,387,886 + Echvi_4511 0.90 +0.5
5,387,984 + +1.0
5,387,984 + -0.4
5,388,026 + +0.4
5,388,027 - +3.4
5,388,132 - -2.2
5,388,132 - +1.5
5,388,144 + +1.3
5,388,144 + -0.7
5,388,145 - -0.7
5,388,145 - +1.9
5,388,145 - +1.0
5,388,145 - -0.6
5,388,185 + -0.1
5,388,185 + -0.7
5,388,186 - -0.4
5,388,186 - +0.8
5,388,186 - +0.3
5,388,187 + +0.5
5,388,203 - -0.1
5,388,211 - -1.2
5,388,345 + -1.8

Or see this region's nucleotide sequence