Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4438

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4437 and Echvi_4438 are separated by 187 nucleotidesEchvi_4438 and Echvi_4439 are separated by 277 nucleotides Echvi_4437: Echvi_4437 - FOG: Transposase and inactivated derivatives, at 5,308,998 to 5,310,230 _4437 Echvi_4438: Echvi_4438 - Abortive infection bacteriophage resistance protein, at 5,310,418 to 5,311,323 _4438 Echvi_4439: Echvi_4439 - Site-specific recombinase XerD, at 5,311,601 to 5,312,527 _4439 Position (kb) 5310 5311 5312Strain fitness (log2 ratio) -2 -1 0 1 2at 5310.340 kb on - strandat 5310.352 kb on + strandat 5310.353 kb on - strandat 5310.353 kb on - strandat 5310.353 kb on - strandat 5310.353 kb on - strandat 5310.353 kb on - strandat 5310.406 kb on + strandat 5310.406 kb on + strandat 5310.407 kb on - strandat 5310.416 kb on + strandat 5310.419 kb on + strandat 5310.427 kb on + strandat 5310.517 kb on - strand, within Echvi_4438at 5310.551 kb on + strand, within Echvi_4438at 5310.575 kb on + strand, within Echvi_4438at 5310.577 kb on + strand, within Echvi_4438at 5310.578 kb on - strand, within Echvi_4438at 5310.600 kb on + strand, within Echvi_4438at 5310.601 kb on - strand, within Echvi_4438at 5310.601 kb on - strand, within Echvi_4438at 5310.637 kb on + strand, within Echvi_4438at 5310.638 kb on - strand, within Echvi_4438at 5310.640 kb on + strand, within Echvi_4438at 5310.641 kb on - strand, within Echvi_4438at 5310.641 kb on - strand, within Echvi_4438at 5310.681 kb on + strand, within Echvi_4438at 5310.682 kb on - strand, within Echvi_4438at 5310.695 kb on + strand, within Echvi_4438at 5310.696 kb on - strand, within Echvi_4438at 5310.741 kb on + strand, within Echvi_4438at 5310.742 kb on - strand, within Echvi_4438at 5310.882 kb on + strand, within Echvi_4438at 5310.884 kb on + strand, within Echvi_4438at 5310.912 kb on + strand, within Echvi_4438at 5310.912 kb on + strand, within Echvi_4438at 5310.913 kb on - strand, within Echvi_4438at 5310.945 kb on + strand, within Echvi_4438at 5310.945 kb on + strand, within Echvi_4438at 5310.959 kb on - strand, within Echvi_4438at 5310.961 kb on + strand, within Echvi_4438at 5310.975 kb on + strand, within Echvi_4438at 5310.976 kb on - strand, within Echvi_4438at 5310.982 kb on + strand, within Echvi_4438at 5310.983 kb on - strand, within Echvi_4438at 5310.983 kb on - strand, within Echvi_4438at 5310.983 kb on - strand, within Echvi_4438at 5310.983 kb on - strand, within Echvi_4438at 5311.098 kb on + strand, within Echvi_4438at 5311.110 kb on + strand, within Echvi_4438at 5311.114 kb on + strand, within Echvi_4438at 5311.208 kb on + strand, within Echvi_4438at 5311.227 kb on - strand, within Echvi_4438at 5311.283 kb on - strandat 5311.283 kb on - strandat 5311.283 kb on - strandat 5311.283 kb on - strandat 5311.294 kb on + strandat 5311.295 kb on - strandat 5311.302 kb on + strandat 5311.353 kb on - strandat 5311.527 kb on - strandat 5311.527 kb on - strandat 5311.527 kb on - strandat 5311.536 kb on + strandat 5311.547 kb on + strandat 5311.547 kb on + strandat 5311.550 kb on + strandat 5311.599 kb on + strandat 5311.602 kb on + strandat 5311.602 kb on + strandat 5311.603 kb on - strandat 5311.651 kb on + strandat 5311.665 kb on + strandat 5311.672 kb on + strandat 5311.684 kb on + strandat 5311.684 kb on + strandat 5311.685 kb on - strandat 5311.721 kb on - strand, within Echvi_4439at 5311.739 kb on + strand, within Echvi_4439at 5311.740 kb on - strand, within Echvi_4439at 5311.741 kb on + strand, within Echvi_4439at 5311.742 kb on - strand, within Echvi_4439at 5311.796 kb on + strand, within Echvi_4439at 5311.796 kb on + strand, within Echvi_4439at 5311.821 kb on + strand, within Echvi_4439at 5311.821 kb on + strand, within Echvi_4439at 5311.822 kb on - strand, within Echvi_4439at 5311.822 kb on - strand, within Echvi_4439at 5311.830 kb on + strand, within Echvi_4439at 5311.830 kb on + strand, within Echvi_4439at 5311.831 kb on - strand, within Echvi_4439at 5311.847 kb on - strand, within Echvi_4439at 5311.864 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.012 kb on - strand, within Echvi_4439at 5312.060 kb on - strand, within Echvi_4439at 5312.063 kb on + strand, within Echvi_4439at 5312.064 kb on - strand, within Echvi_4439at 5312.123 kb on - strand, within Echvi_4439at 5312.124 kb on + strand, within Echvi_4439at 5312.124 kb on + strand, within Echvi_4439at 5312.125 kb on - strand, within Echvi_4439at 5312.125 kb on - strand, within Echvi_4439at 5312.159 kb on + strand, within Echvi_4439at 5312.159 kb on + strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.161 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.206 kb on + strand, within Echvi_4439at 5312.206 kb on + strand, within Echvi_4439at 5312.207 kb on - strand, within Echvi_4439at 5312.252 kb on - strand, within Echvi_4439

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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5,310,340 - -0.6
5,310,352 + +2.2
5,310,353 - +2.1
5,310,353 - -0.0
5,310,353 - -0.4
5,310,353 - -0.2
5,310,353 - +0.6
5,310,406 + -1.0
5,310,406 + -1.5
5,310,407 - -0.1
5,310,416 + +0.8
5,310,419 + +1.6
5,310,427 + -2.0
5,310,517 - Echvi_4438 0.11 +1.7
5,310,551 + Echvi_4438 0.15 -0.5
5,310,575 + Echvi_4438 0.17 +0.2
5,310,577 + Echvi_4438 0.18 -0.1
5,310,578 - Echvi_4438 0.18 -0.3
5,310,600 + Echvi_4438 0.20 -0.0
5,310,601 - Echvi_4438 0.20 -0.5
5,310,601 - Echvi_4438 0.20 -0.1
5,310,637 + Echvi_4438 0.24 +1.9
5,310,638 - Echvi_4438 0.24 -1.3
5,310,640 + Echvi_4438 0.25 +0.6
5,310,641 - Echvi_4438 0.25 +0.8
5,310,641 - Echvi_4438 0.25 -1.9
5,310,681 + Echvi_4438 0.29 -0.1
5,310,682 - Echvi_4438 0.29 +1.9
5,310,695 + Echvi_4438 0.31 +0.2
5,310,696 - Echvi_4438 0.31 +0.5
5,310,741 + Echvi_4438 0.36 +0.6
5,310,742 - Echvi_4438 0.36 -0.0
5,310,882 + Echvi_4438 0.51 +0.6
5,310,884 + Echvi_4438 0.51 -0.0
5,310,912 + Echvi_4438 0.55 +0.2
5,310,912 + Echvi_4438 0.55 -1.9
5,310,913 - Echvi_4438 0.55 +1.4
5,310,945 + Echvi_4438 0.58 +0.4
5,310,945 + Echvi_4438 0.58 +0.3
5,310,959 - Echvi_4438 0.60 +0.4
5,310,961 + Echvi_4438 0.60 +2.1
5,310,975 + Echvi_4438 0.61 -0.0
5,310,976 - Echvi_4438 0.62 +0.7
5,310,982 + Echvi_4438 0.62 -0.2
5,310,983 - Echvi_4438 0.62 -0.5
5,310,983 - Echvi_4438 0.62 -1.3
5,310,983 - Echvi_4438 0.62 -0.1
5,310,983 - Echvi_4438 0.62 -1.2
5,311,098 + Echvi_4438 0.75 +0.1
5,311,110 + Echvi_4438 0.76 +0.2
5,311,114 + Echvi_4438 0.77 -0.0
5,311,208 + Echvi_4438 0.87 +1.5
5,311,227 - Echvi_4438 0.89 -0.7
5,311,283 - +1.4
5,311,283 - -0.4
5,311,283 - -2.5
5,311,283 - +2.7
5,311,294 + -1.2
5,311,295 - -0.2
5,311,302 + +1.5
5,311,353 - +1.6
5,311,527 - -1.9
5,311,527 - -0.9
5,311,527 - +1.2
5,311,536 + +0.7
5,311,547 + +2.4
5,311,547 + +0.3
5,311,550 + +0.5
5,311,599 + +1.4
5,311,602 + +0.8
5,311,602 + +0.1
5,311,603 - +0.4
5,311,651 + -0.4
5,311,665 + -0.0
5,311,672 + +0.6
5,311,684 + -2.2
5,311,684 + -2.5
5,311,685 - -0.3
5,311,721 - Echvi_4439 0.13 +0.7
5,311,739 + Echvi_4439 0.15 +0.3
5,311,740 - Echvi_4439 0.15 +1.2
5,311,741 + Echvi_4439 0.15 +0.4
5,311,742 - Echvi_4439 0.15 -0.4
5,311,796 + Echvi_4439 0.21 -0.4
5,311,796 + Echvi_4439 0.21 +0.6
5,311,821 + Echvi_4439 0.24 +1.0
5,311,821 + Echvi_4439 0.24 +0.9
5,311,822 - Echvi_4439 0.24 -1.5
5,311,822 - Echvi_4439 0.24 +2.2
5,311,830 + Echvi_4439 0.25 +0.1
5,311,830 + Echvi_4439 0.25 -0.6
5,311,831 - Echvi_4439 0.25 -1.1
5,311,847 - Echvi_4439 0.27 +0.8
5,311,864 + Echvi_4439 0.28 -0.4
5,312,006 + Echvi_4439 0.44 +1.0
5,312,006 + Echvi_4439 0.44 -0.6
5,312,006 + Echvi_4439 0.44 +0.1
5,312,012 - Echvi_4439 0.44 +1.8
5,312,060 - Echvi_4439 0.50 -2.0
5,312,063 + Echvi_4439 0.50 +0.5
5,312,064 - Echvi_4439 0.50 +0.8
5,312,123 - Echvi_4439 0.56 -2.5
5,312,124 + Echvi_4439 0.56 -0.2
5,312,124 + Echvi_4439 0.56 -0.2
5,312,125 - Echvi_4439 0.57 +0.5
5,312,125 - Echvi_4439 0.57 -0.7
5,312,159 + Echvi_4439 0.60 -1.0
5,312,159 + Echvi_4439 0.60 -2.7
5,312,160 - Echvi_4439 0.60 -0.7
5,312,160 - Echvi_4439 0.60 -2.0
5,312,160 - Echvi_4439 0.60 -0.8
5,312,160 - Echvi_4439 0.60 -0.4
5,312,161 + Echvi_4439 0.60 +0.7
5,312,204 + Echvi_4439 0.65 +2.3
5,312,204 + Echvi_4439 0.65 -0.6
5,312,204 + Echvi_4439 0.65 -0.1
5,312,204 + Echvi_4439 0.65 +0.4
5,312,204 + Echvi_4439 0.65 +0.6
5,312,206 + Echvi_4439 0.65 -1.9
5,312,206 + Echvi_4439 0.65 +0.9
5,312,207 - Echvi_4439 0.65 +0.2
5,312,252 - Echvi_4439 0.70 -1.1

Or see this region's nucleotide sequence