Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4361 and Echvi_4362 overlap by 14 nucleotides Echvi_4362 and Echvi_4363 overlap by 4 nucleotides Echvi_4363 and Echvi_4364 overlap by 8 nucleotides Echvi_4364 and Echvi_4365 are separated by 1 nucleotides Echvi_4365 and Echvi_4366 overlap by 23 nucleotides
Echvi_4361: Echvi_4361 - hypothetical protein, at 5,217,362 to 5,218,009
_4361
Echvi_4362: Echvi_4362 - hypothetical protein, at 5,217,996 to 5,218,694
_4362
Echvi_4363: Echvi_4363 - Bacteroides conjugation system ATPase, TraG family, at 5,218,691 to 5,221,159
_4363
Echvi_4364: Echvi_4364 - hypothetical protein, at 5,221,152 to 5,221,478
_4364
Echvi_4365: Echvi_4365 - hypothetical protein, at 5,221,480 to 5,221,785
_4365
Echvi_4366: Echvi_4366 - hypothetical protein, at 5,221,763 to 5,222,110
_4366
Position (kb) 5218
5219
5220
5221
5222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5217.850 kb on - strand, within Echvi_4361 at 5217.873 kb on + strand, within Echvi_4361 at 5217.874 kb on - strand at 5217.874 kb on - strand, within Echvi_4361 at 5217.874 kb on - strand, within Echvi_4361 at 5217.874 kb on - strand, within Echvi_4361 at 5217.989 kb on + strand at 5218.023 kb on + strand at 5218.197 kb on + strand, within Echvi_4362 at 5218.408 kb on + strand, within Echvi_4362 at 5218.597 kb on + strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.598 kb on - strand, within Echvi_4362 at 5218.781 kb on + strand at 5218.782 kb on - strand at 5218.804 kb on + strand at 5218.806 kb on + strand at 5218.842 kb on + strand at 5219.069 kb on + strand, within Echvi_4363 at 5219.128 kb on - strand, within Echvi_4363 at 5219.128 kb on - strand, within Echvi_4363 at 5219.136 kb on + strand, within Echvi_4363 at 5219.137 kb on - strand, within Echvi_4363 at 5219.353 kb on - strand, within Echvi_4363 at 5219.520 kb on + strand, within Echvi_4363 at 5219.521 kb on - strand, within Echvi_4363 at 5219.521 kb on - strand, within Echvi_4363 at 5219.554 kb on - strand, within Echvi_4363 at 5219.691 kb on + strand, within Echvi_4363 at 5219.691 kb on + strand, within Echvi_4363 at 5219.691 kb on + strand, within Echvi_4363 at 5219.691 kb on + strand, within Echvi_4363 at 5219.692 kb on - strand, within Echvi_4363 at 5219.695 kb on + strand, within Echvi_4363 at 5219.695 kb on + strand, within Echvi_4363 at 5219.696 kb on - strand, within Echvi_4363 at 5219.700 kb on + strand, within Echvi_4363 at 5219.701 kb on - strand, within Echvi_4363 at 5219.701 kb on - strand, within Echvi_4363 at 5219.701 kb on - strand, within Echvi_4363 at 5219.701 kb on - strand, within Echvi_4363 at 5219.794 kb on + strand, within Echvi_4363 at 5219.794 kb on + strand, within Echvi_4363 at 5219.803 kb on + strand, within Echvi_4363 at 5219.804 kb on - strand, within Echvi_4363 at 5219.962 kb on - strand, within Echvi_4363 at 5220.234 kb on + strand, within Echvi_4363 at 5220.235 kb on - strand, within Echvi_4363 at 5220.235 kb on - strand, within Echvi_4363 at 5220.276 kb on + strand, within Echvi_4363 at 5220.363 kb on + strand, within Echvi_4363 at 5220.363 kb on + strand, within Echvi_4363 at 5220.364 kb on - strand, within Echvi_4363 at 5220.364 kb on - strand, within Echvi_4363 at 5220.525 kb on - strand, within Echvi_4363 at 5221.059 kb on + strand at 5221.059 kb on + strand at 5221.059 kb on + strand at 5221.060 kb on - strand at 5221.142 kb on + strand at 5221.154 kb on - strand at 5221.262 kb on - strand, within Echvi_4364 at 5221.354 kb on + strand, within Echvi_4364 at 5221.355 kb on - strand, within Echvi_4364 at 5221.380 kb on + strand, within Echvi_4364 at 5221.411 kb on + strand, within Echvi_4364 at 5221.412 kb on - strand, within Echvi_4364 at 5221.412 kb on - strand, within Echvi_4364 at 5221.430 kb on + strand, within Echvi_4364 at 5221.466 kb on + strand at 5221.467 kb on - strand at 5221.665 kb on - strand, within Echvi_4365 at 5222.041 kb on + strand, within Echvi_4366 at 5222.041 kb on + strand, within Echvi_4366 at 5222.042 kb on - strand, within Echvi_4366 at 5222.043 kb on + strand, within Echvi_4366 at 5222.044 kb on - strand, within Echvi_4366 at 5222.046 kb on + strand, within Echvi_4366 at 5222.047 kb on - strand, within Echvi_4366
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 5,217,850 - Echvi_4361 0.75 +1.0 5,217,873 + Echvi_4361 0.79 -1.6 5,217,874 - +0.5 5,217,874 - Echvi_4361 0.79 -2.2 5,217,874 - Echvi_4361 0.79 +1.0 5,217,874 - Echvi_4361 0.79 -1.9 5,217,989 + +0.1 5,218,023 + -0.1 5,218,197 + Echvi_4362 0.29 -2.1 5,218,408 + Echvi_4362 0.59 -1.4 5,218,597 + Echvi_4362 0.86 -0.9 5,218,598 - Echvi_4362 0.86 -3.4 5,218,598 - Echvi_4362 0.86 -0.4 5,218,598 - Echvi_4362 0.86 +0.1 5,218,598 - Echvi_4362 0.86 +0.3 5,218,781 + -0.4 5,218,782 - -2.6 5,218,804 + -1.0 5,218,806 + -0.3 5,218,842 + -0.9 5,219,069 + Echvi_4363 0.15 +2.1 5,219,128 - Echvi_4363 0.18 -0.9 5,219,128 - Echvi_4363 0.18 -0.2 5,219,136 + Echvi_4363 0.18 -0.7 5,219,137 - Echvi_4363 0.18 -0.6 5,219,353 - Echvi_4363 0.27 +1.3 5,219,520 + Echvi_4363 0.34 -1.6 5,219,521 - Echvi_4363 0.34 -0.4 5,219,521 - Echvi_4363 0.34 +0.3 5,219,554 - Echvi_4363 0.35 -2.4 5,219,691 + Echvi_4363 0.41 +0.9 5,219,691 + Echvi_4363 0.41 -0.0 5,219,691 + Echvi_4363 0.41 -0.9 5,219,691 + Echvi_4363 0.41 +0.3 5,219,692 - Echvi_4363 0.41 +1.4 5,219,695 + Echvi_4363 0.41 -3.0 5,219,695 + Echvi_4363 0.41 -0.9 5,219,696 - Echvi_4363 0.41 -0.5 5,219,700 + Echvi_4363 0.41 -1.5 5,219,701 - Echvi_4363 0.41 -2.3 5,219,701 - Echvi_4363 0.41 +1.3 5,219,701 - Echvi_4363 0.41 -1.3 5,219,701 - Echvi_4363 0.41 -1.1 5,219,794 + Echvi_4363 0.45 -0.5 5,219,794 + Echvi_4363 0.45 -2.8 5,219,803 + Echvi_4363 0.45 -3.3 5,219,804 - Echvi_4363 0.45 +0.0 5,219,962 - Echvi_4363 0.51 -0.3 5,220,234 + Echvi_4363 0.62 +0.8 5,220,235 - Echvi_4363 0.63 -1.4 5,220,235 - Echvi_4363 0.63 -2.8 5,220,276 + Echvi_4363 0.64 +0.1 5,220,363 + Echvi_4363 0.68 -0.2 5,220,363 + Echvi_4363 0.68 -2.4 5,220,364 - Echvi_4363 0.68 -2.0 5,220,364 - Echvi_4363 0.68 -0.7 5,220,525 - Echvi_4363 0.74 -0.1 5,221,059 + -0.1 5,221,059 + -0.6 5,221,059 + +1.7 5,221,060 - -2.1 5,221,142 + -0.1 5,221,154 - -1.4 5,221,262 - Echvi_4364 0.34 -0.1 5,221,354 + Echvi_4364 0.62 -0.5 5,221,355 - Echvi_4364 0.62 -0.6 5,221,380 + Echvi_4364 0.70 -0.8 5,221,411 + Echvi_4364 0.79 -3.1 5,221,412 - Echvi_4364 0.80 -2.1 5,221,412 - Echvi_4364 0.80 +1.5 5,221,430 + Echvi_4364 0.85 +0.8 5,221,466 + -1.1 5,221,467 - -0.1 5,221,665 - Echvi_4365 0.60 +0.4 5,222,041 + Echvi_4366 0.80 +1.0 5,222,041 + Echvi_4366 0.80 -2.1 5,222,042 - Echvi_4366 0.80 -0.3 5,222,043 + Echvi_4366 0.80 -1.2 5,222,044 - Echvi_4366 0.81 -2.6 5,222,046 + Echvi_4366 0.81 +1.2 5,222,047 - Echvi_4366 0.82 -0.7
Or see this region's nucleotide sequence