Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4357 and Echvi_4358 are separated by 294 nucleotides Echvi_4358 and Echvi_4359 are separated by 1 nucleotides
Echvi_4357: Echvi_4357 - Protein of unknown function (DUF3714)., at 5,213,571 to 5,214,785
_4357
Echvi_4358: Echvi_4358 - Bacteroides conjugative transposon TraK protein, at 5,215,080 to 5,215,697
_4358
Echvi_4359: Echvi_4359 - Bacteroides conjugative transposon TraJ protein, at 5,215,699 to 5,216,739
_4359
Position (kb) 5215
5216 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5214.226 kb on - strand, within Echvi_4357 at 5214.539 kb on - strand, within Echvi_4357 at 5214.596 kb on - strand, within Echvi_4357 at 5214.824 kb on - strand at 5214.959 kb on + strand at 5215.065 kb on + strand at 5215.066 kb on - strand at 5215.068 kb on + strand at 5215.202 kb on + strand, within Echvi_4358 at 5215.202 kb on + strand, within Echvi_4358 at 5215.336 kb on + strand, within Echvi_4358 at 5215.336 kb on + strand, within Echvi_4358 at 5215.336 kb on + strand, within Echvi_4358 at 5215.553 kb on - strand, within Echvi_4358 at 5215.553 kb on - strand, within Echvi_4358 at 5215.617 kb on + strand, within Echvi_4358 at 5215.617 kb on + strand, within Echvi_4358 at 5215.618 kb on - strand, within Echvi_4358 at 5215.674 kb on + strand at 5215.674 kb on + strand at 5215.674 kb on + strand at 5215.675 kb on - strand at 5215.697 kb on + strand at 5215.704 kb on + strand at 5215.743 kb on + strand at 5215.816 kb on - strand, within Echvi_4359 at 5215.820 kb on + strand, within Echvi_4359 at 5215.982 kb on + strand, within Echvi_4359 at 5215.982 kb on + strand, within Echvi_4359 at 5215.982 kb on + strand, within Echvi_4359 at 5215.983 kb on - strand, within Echvi_4359 at 5215.983 kb on - strand, within Echvi_4359 at 5215.992 kb on + strand, within Echvi_4359 at 5215.992 kb on + strand, within Echvi_4359 at 5215.992 kb on + strand, within Echvi_4359 at 5216.088 kb on - strand, within Echvi_4359 at 5216.088 kb on - strand, within Echvi_4359 at 5216.103 kb on + strand, within Echvi_4359 at 5216.130 kb on - strand, within Echvi_4359 at 5216.264 kb on + strand, within Echvi_4359 at 5216.271 kb on - strand, within Echvi_4359 at 5216.309 kb on + strand, within Echvi_4359 at 5216.309 kb on + strand, within Echvi_4359 at 5216.309 kb on + strand, within Echvi_4359 at 5216.309 kb on + strand, within Echvi_4359 at 5216.310 kb on - strand, within Echvi_4359 at 5216.389 kb on + strand, within Echvi_4359 at 5216.389 kb on + strand, within Echvi_4359 at 5216.556 kb on - strand, within Echvi_4359 at 5216.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 5,214,226 - Echvi_4357 0.54 -0.9 5,214,539 - Echvi_4357 0.80 -0.5 5,214,596 - Echvi_4357 0.84 +1.5 5,214,824 - -2.4 5,214,959 + -0.8 5,215,065 + -3.0 5,215,066 - +0.5 5,215,068 + -1.9 5,215,202 + Echvi_4358 0.20 -0.0 5,215,202 + Echvi_4358 0.20 -0.7 5,215,336 + Echvi_4358 0.41 -2.0 5,215,336 + Echvi_4358 0.41 -1.3 5,215,336 + Echvi_4358 0.41 -1.1 5,215,553 - Echvi_4358 0.77 -3.9 5,215,553 - Echvi_4358 0.77 -2.0 5,215,617 + Echvi_4358 0.87 +0.1 5,215,617 + Echvi_4358 0.87 -3.1 5,215,618 - Echvi_4358 0.87 -0.7 5,215,674 + -1.9 5,215,674 + +1.0 5,215,674 + -0.7 5,215,675 - -3.3 5,215,697 + -0.6 5,215,704 + +1.2 5,215,743 + -1.4 5,215,816 - Echvi_4359 0.11 -0.0 5,215,820 + Echvi_4359 0.12 +0.4 5,215,982 + Echvi_4359 0.27 -0.0 5,215,982 + Echvi_4359 0.27 +0.3 5,215,982 + Echvi_4359 0.27 -2.6 5,215,983 - Echvi_4359 0.27 -0.6 5,215,983 - Echvi_4359 0.27 -3.6 5,215,992 + Echvi_4359 0.28 -0.5 5,215,992 + Echvi_4359 0.28 -0.4 5,215,992 + Echvi_4359 0.28 -2.1 5,216,088 - Echvi_4359 0.37 +0.9 5,216,088 - Echvi_4359 0.37 -3.4 5,216,103 + Echvi_4359 0.39 +2.1 5,216,130 - Echvi_4359 0.41 +0.5 5,216,264 + Echvi_4359 0.54 +0.9 5,216,271 - Echvi_4359 0.55 -1.6 5,216,309 + Echvi_4359 0.59 -0.1 5,216,309 + Echvi_4359 0.59 -1.5 5,216,309 + Echvi_4359 0.59 -0.7 5,216,309 + Echvi_4359 0.59 -0.7 5,216,310 - Echvi_4359 0.59 -0.0 5,216,389 + Echvi_4359 0.66 +1.3 5,216,389 + Echvi_4359 0.66 -0.9 5,216,556 - Echvi_4359 0.82 -1.2 5,216,674 + -0.5
Or see this region's nucleotide sequence