Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3863 and Echvi_3864 are separated by 188 nucleotides Echvi_3864 and Echvi_3865 are separated by 164 nucleotides
Echvi_3863: Echvi_3863 - Glycosyltransferase, at 4,616,322 to 4,617,632
_3863
Echvi_3864: Echvi_3864 - Glycosyltransferase, at 4,617,821 to 4,618,975
_3864
Echvi_3865: Echvi_3865 - FAD/FMN-containing dehydrogenases, at 4,619,140 to 4,622,088
_3865
Position (kb)
4617
4618
4619 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4617.197 kb on + strand, within Echvi_3863 at 4617.211 kb on - strand, within Echvi_3863 at 4617.409 kb on + strand, within Echvi_3863 at 4617.542 kb on - strand at 4617.598 kb on + strand at 4617.644 kb on - strand at 4617.662 kb on + strand at 4617.663 kb on - strand at 4617.687 kb on - strand at 4617.696 kb on + strand at 4617.715 kb on - strand at 4617.715 kb on - strand at 4617.745 kb on - strand at 4617.772 kb on - strand at 4617.796 kb on + strand at 4617.924 kb on - strand at 4617.998 kb on + strand, within Echvi_3864 at 4618.022 kb on + strand, within Echvi_3864 at 4618.033 kb on + strand, within Echvi_3864 at 4618.034 kb on - strand, within Echvi_3864 at 4618.147 kb on + strand, within Echvi_3864 at 4618.147 kb on + strand, within Echvi_3864 at 4618.147 kb on + strand, within Echvi_3864 at 4618.147 kb on + strand, within Echvi_3864 at 4618.148 kb on - strand, within Echvi_3864 at 4618.148 kb on - strand, within Echvi_3864 at 4618.148 kb on - strand, within Echvi_3864 at 4618.148 kb on - strand, within Echvi_3864 at 4618.149 kb on + strand, within Echvi_3864 at 4618.149 kb on + strand, within Echvi_3864 at 4618.150 kb on - strand, within Echvi_3864 at 4618.150 kb on - strand, within Echvi_3864 at 4618.150 kb on - strand, within Echvi_3864 at 4618.150 kb on - strand, within Echvi_3864 at 4618.202 kb on + strand, within Echvi_3864 at 4618.202 kb on + strand, within Echvi_3864 at 4618.203 kb on - strand, within Echvi_3864 at 4618.276 kb on + strand, within Echvi_3864 at 4618.277 kb on - strand, within Echvi_3864 at 4618.277 kb on - strand, within Echvi_3864 at 4618.382 kb on + strand at 4618.560 kb on + strand, within Echvi_3864 at 4618.564 kb on + strand, within Echvi_3864 at 4618.564 kb on + strand, within Echvi_3864 at 4618.564 kb on + strand, within Echvi_3864 at 4618.564 kb on + strand, within Echvi_3864 at 4618.564 kb on + strand, within Echvi_3864 at 4618.565 kb on - strand, within Echvi_3864 at 4618.565 kb on - strand, within Echvi_3864 at 4618.597 kb on + strand, within Echvi_3864 at 4618.598 kb on - strand, within Echvi_3864 at 4618.603 kb on + strand, within Echvi_3864 at 4618.623 kb on + strand, within Echvi_3864 at 4618.623 kb on + strand, within Echvi_3864 at 4618.643 kb on - strand, within Echvi_3864 at 4618.754 kb on + strand, within Echvi_3864 at 4618.755 kb on - strand, within Echvi_3864 at 4618.906 kb on - strand at 4618.955 kb on - strand at 4618.989 kb on - strand at 4619.000 kb on + strand at 4619.001 kb on - strand at 4619.001 kb on - strand at 4619.003 kb on - strand at 4619.030 kb on + strand at 4619.044 kb on + strand at 4619.048 kb on + strand at 4619.072 kb on + strand at 4619.218 kb on - strand at 4619.301 kb on + strand at 4619.302 kb on - strand at 4619.302 kb on - strand at 4619.306 kb on - strand at 4619.306 kb on - strand at 4619.312 kb on + strand at 4619.312 kb on + strand at 4619.381 kb on + strand at 4619.470 kb on - strand, within Echvi_3865 at 4619.536 kb on + strand, within Echvi_3865 at 4619.536 kb on + strand, within Echvi_3865 at 4619.582 kb on + strand, within Echvi_3865 at 4619.583 kb on - strand, within Echvi_3865 at 4619.583 kb on - strand, within Echvi_3865 at 4619.586 kb on + strand, within Echvi_3865 at 4619.587 kb on - strand, within Echvi_3865 at 4619.590 kb on + strand, within Echvi_3865 at 4619.590 kb on + strand, within Echvi_3865 at 4619.680 kb on + strand, within Echvi_3865 at 4619.680 kb on + strand, within Echvi_3865 at 4619.680 kb on + strand, within Echvi_3865 at 4619.681 kb on - strand, within Echvi_3865 at 4619.780 kb on + strand, within Echvi_3865 at 4619.898 kb on + strand, within Echvi_3865 at 4619.898 kb on + strand, within Echvi_3865 at 4619.898 kb on + strand at 4619.903 kb on + strand, within Echvi_3865 at 4619.903 kb on + strand, within Echvi_3865 at 4619.910 kb on + strand, within Echvi_3865 at 4619.911 kb on - strand, within Echvi_3865 at 4619.915 kb on + strand, within Echvi_3865 at 4619.933 kb on - strand, within Echvi_3865 at 4619.933 kb on - strand, within Echvi_3865
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 4,617,197 + Echvi_3863 0.67 -2.0 4,617,211 - Echvi_3863 0.68 -2.7 4,617,409 + Echvi_3863 0.83 +0.5 4,617,542 - -1.2 4,617,598 + -2.6 4,617,644 - +1.2 4,617,662 + -1.1 4,617,663 - -0.0 4,617,687 - -0.6 4,617,696 + -1.5 4,617,715 - -0.2 4,617,715 - -2.2 4,617,745 - +0.2 4,617,772 - -0.5 4,617,796 + +0.1 4,617,924 - -0.5 4,617,998 + Echvi_3864 0.15 +0.1 4,618,022 + Echvi_3864 0.17 +1.1 4,618,033 + Echvi_3864 0.18 -1.1 4,618,034 - Echvi_3864 0.18 +3.2 4,618,147 + Echvi_3864 0.28 -0.1 4,618,147 + Echvi_3864 0.28 +0.7 4,618,147 + Echvi_3864 0.28 +1.5 4,618,147 + Echvi_3864 0.28 +1.1 4,618,148 - Echvi_3864 0.28 +1.1 4,618,148 - Echvi_3864 0.28 +1.7 4,618,148 - Echvi_3864 0.28 +2.1 4,618,148 - Echvi_3864 0.28 +3.1 4,618,149 + Echvi_3864 0.28 +1.6 4,618,149 + Echvi_3864 0.28 +1.5 4,618,150 - Echvi_3864 0.28 +0.4 4,618,150 - Echvi_3864 0.28 +1.0 4,618,150 - Echvi_3864 0.28 +3.0 4,618,150 - Echvi_3864 0.28 +1.3 4,618,202 + Echvi_3864 0.33 +3.3 4,618,202 + Echvi_3864 0.33 +2.0 4,618,203 - Echvi_3864 0.33 +0.4 4,618,276 + Echvi_3864 0.39 +1.3 4,618,277 - Echvi_3864 0.39 +0.7 4,618,277 - Echvi_3864 0.39 +2.1 4,618,382 + +1.1 4,618,560 + Echvi_3864 0.64 +1.8 4,618,564 + Echvi_3864 0.64 +1.4 4,618,564 + Echvi_3864 0.64 +1.4 4,618,564 + Echvi_3864 0.64 +1.8 4,618,564 + Echvi_3864 0.64 +2.1 4,618,564 + Echvi_3864 0.64 +1.8 4,618,565 - Echvi_3864 0.64 +2.6 4,618,565 - Echvi_3864 0.64 +1.8 4,618,597 + Echvi_3864 0.67 +1.1 4,618,598 - Echvi_3864 0.67 -1.6 4,618,603 + Echvi_3864 0.68 +0.3 4,618,623 + Echvi_3864 0.69 +2.1 4,618,623 + Echvi_3864 0.69 -1.6 4,618,643 - Echvi_3864 0.71 +1.5 4,618,754 + Echvi_3864 0.81 +1.1 4,618,755 - Echvi_3864 0.81 +1.8 4,618,906 - +0.6 4,618,955 - +0.7 4,618,989 - +0.5 4,619,000 + +1.0 4,619,001 - -0.1 4,619,001 - +1.6 4,619,003 - -0.2 4,619,030 + +1.1 4,619,044 + -0.2 4,619,048 + +0.8 4,619,072 + +0.9 4,619,218 - -2.6 4,619,301 + -2.9 4,619,302 - -1.7 4,619,302 - -0.2 4,619,306 - -2.0 4,619,306 - -1.4 4,619,312 + -2.6 4,619,312 + -3.4 4,619,381 + -4.1 4,619,470 - Echvi_3865 0.11 -0.9 4,619,536 + Echvi_3865 0.13 -2.5 4,619,536 + Echvi_3865 0.13 -1.1 4,619,582 + Echvi_3865 0.15 -1.5 4,619,583 - Echvi_3865 0.15 -1.6 4,619,583 - Echvi_3865 0.15 -3.9 4,619,586 + Echvi_3865 0.15 -1.5 4,619,587 - Echvi_3865 0.15 -3.4 4,619,590 + Echvi_3865 0.15 -3.2 4,619,590 + Echvi_3865 0.15 -1.6 4,619,680 + Echvi_3865 0.18 +0.1 4,619,680 + Echvi_3865 0.18 -1.2 4,619,680 + Echvi_3865 0.18 -0.4 4,619,681 - Echvi_3865 0.18 -2.9 4,619,780 + Echvi_3865 0.22 -2.5 4,619,898 + Echvi_3865 0.26 -3.5 4,619,898 + Echvi_3865 0.26 -2.6 4,619,898 + +2.1 4,619,903 + Echvi_3865 0.26 -4.5 4,619,903 + Echvi_3865 0.26 -0.9 4,619,910 + Echvi_3865 0.26 -2.5 4,619,911 - Echvi_3865 0.26 -2.2 4,619,915 + Echvi_3865 0.26 -1.4 4,619,933 - Echvi_3865 0.27 -2.9 4,619,933 - Echvi_3865 0.27 -1.4
Or see this region's nucleotide sequence