Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3718

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3717 and Echvi_3718 are separated by 244 nucleotidesEchvi_3718 and Echvi_3719 are separated by 4 nucleotidesEchvi_3719 and Echvi_3720 are separated by 249 nucleotides Echvi_3717: Echvi_3717 - Outer membrane protein/protective antigen OMA87, at 4,421,936 to 4,424,353 _3717 Echvi_3718: Echvi_3718 - Coproporphyrinogen III oxidase, at 4,424,598 to 4,425,506 _3718 Echvi_3719: Echvi_3719 - Membrane-associated phospholipid phosphatase, at 4,425,511 to 4,426,098 _3719 Echvi_3720: Echvi_3720 - riboflavin synthase, alpha subunit, at 4,426,348 to 4,426,935 _3720 Position (kb) 4424 4425 4426Strain fitness (log2 ratio) -2 -1 0 1 2at 4423.628 kb on - strand, within Echvi_3717at 4423.707 kb on + strand, within Echvi_3717at 4423.707 kb on + strand, within Echvi_3717at 4423.708 kb on - strand, within Echvi_3717at 4423.708 kb on - strand, within Echvi_3717at 4423.745 kb on + strandat 4423.745 kb on + strand, within Echvi_3717at 4423.746 kb on - strand, within Echvi_3717at 4423.784 kb on + strand, within Echvi_3717at 4423.784 kb on + strand, within Echvi_3717at 4423.784 kb on + strand, within Echvi_3717at 4423.784 kb on + strand, within Echvi_3717at 4423.784 kb on + strand, within Echvi_3717at 4423.784 kb on + strand, within Echvi_3717at 4423.784 kb on + strand, within Echvi_3717at 4423.784 kb on + strand, within Echvi_3717at 4423.785 kb on - strand, within Echvi_3717at 4423.785 kb on - strand, within Echvi_3717at 4423.785 kb on - strand, within Echvi_3717at 4423.787 kb on - strand, within Echvi_3717at 4423.787 kb on - strand, within Echvi_3717at 4423.787 kb on - strand, within Echvi_3717at 4423.883 kb on + strand, within Echvi_3717at 4423.910 kb on - strand, within Echvi_3717at 4424.017 kb on - strand, within Echvi_3717at 4424.100 kb on + strand, within Echvi_3717at 4424.101 kb on - strand, within Echvi_3717at 4424.322 kb on + strandat 4424.327 kb on - strandat 4424.335 kb on + strandat 4424.336 kb on - strandat 4424.458 kb on + strandat 4424.543 kb on + strandat 4424.555 kb on + strandat 4425.504 kb on + strandat 4425.516 kb on - strandat 4426.130 kb on + strandat 4426.160 kb on - strandat 4426.164 kb on - strandat 4426.164 kb on - strandat 4426.164 kb on - strandat 4426.164 kb on - strandat 4426.164 kb on - strandat 4426.176 kb on + strandat 4426.176 kb on + strandat 4426.177 kb on - strandat 4426.187 kb on + strandat 4426.188 kb on - strandat 4426.207 kb on - strandat 4426.220 kb on + strandat 4426.220 kb on + strandat 4426.221 kb on - strandat 4426.224 kb on + strandat 4426.224 kb on + strandat 4426.225 kb on - strandat 4426.234 kb on + strandat 4426.242 kb on - strandat 4426.242 kb on - strandat 4426.274 kb on + strandat 4426.275 kb on - strandat 4426.275 kb on - strandat 4426.292 kb on + strandat 4426.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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4,423,628 - Echvi_3717 0.70 -0.1
4,423,707 + Echvi_3717 0.73 +1.5
4,423,707 + Echvi_3717 0.73 -0.0
4,423,708 - Echvi_3717 0.73 -0.4
4,423,708 - Echvi_3717 0.73 -0.5
4,423,745 + +2.1
4,423,745 + Echvi_3717 0.75 +0.3
4,423,746 - Echvi_3717 0.75 +0.9
4,423,784 + Echvi_3717 0.76 -0.8
4,423,784 + Echvi_3717 0.76 -0.2
4,423,784 + Echvi_3717 0.76 +0.3
4,423,784 + Echvi_3717 0.76 +0.5
4,423,784 + Echvi_3717 0.76 +0.0
4,423,784 + Echvi_3717 0.76 +0.4
4,423,784 + Echvi_3717 0.76 +0.8
4,423,784 + Echvi_3717 0.76 -0.2
4,423,785 - Echvi_3717 0.76 +0.8
4,423,785 - Echvi_3717 0.76 -0.2
4,423,785 - Echvi_3717 0.76 +1.7
4,423,787 - Echvi_3717 0.77 -0.2
4,423,787 - Echvi_3717 0.77 +1.1
4,423,787 - Echvi_3717 0.77 -0.1
4,423,883 + Echvi_3717 0.81 +0.7
4,423,910 - Echvi_3717 0.82 -0.3
4,424,017 - Echvi_3717 0.86 +0.6
4,424,100 + Echvi_3717 0.89 +0.2
4,424,101 - Echvi_3717 0.90 +1.2
4,424,322 + +0.4
4,424,327 - -0.1
4,424,335 + +0.1
4,424,336 - +0.3
4,424,458 + +0.3
4,424,543 + +0.0
4,424,555 + -1.6
4,425,504 + -0.7
4,425,516 - -0.7
4,426,130 + +0.8
4,426,160 - +0.5
4,426,164 - +1.3
4,426,164 - -0.2
4,426,164 - +1.6
4,426,164 - +1.0
4,426,164 - +0.1
4,426,176 + -2.6
4,426,176 + +0.4
4,426,177 - -1.0
4,426,187 + +1.8
4,426,188 - -0.6
4,426,207 - -0.3
4,426,220 + +1.0
4,426,220 + +0.9
4,426,221 - +0.1
4,426,224 + +1.6
4,426,224 + +1.1
4,426,225 - +0.3
4,426,234 + -1.4
4,426,242 - -1.6
4,426,242 - -1.9
4,426,274 + +0.4
4,426,275 - -0.5
4,426,275 - +1.3
4,426,292 + +0.1
4,426,293 - +0.5

Or see this region's nucleotide sequence