Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3717 and Echvi_3718 are separated by 244 nucleotides Echvi_3718 and Echvi_3719 are separated by 4 nucleotides Echvi_3719 and Echvi_3720 are separated by 249 nucleotides
Echvi_3717: Echvi_3717 - Outer membrane protein/protective antigen OMA87, at 4,421,936 to 4,424,353
_3717
Echvi_3718: Echvi_3718 - Coproporphyrinogen III oxidase, at 4,424,598 to 4,425,506
_3718
Echvi_3719: Echvi_3719 - Membrane-associated phospholipid phosphatase, at 4,425,511 to 4,426,098
_3719
Echvi_3720: Echvi_3720 - riboflavin synthase, alpha subunit, at 4,426,348 to 4,426,935
_3720
Position (kb)
4424
4425
4426 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4423.628 kb on - strand, within Echvi_3717 at 4423.707 kb on + strand, within Echvi_3717 at 4423.707 kb on + strand, within Echvi_3717 at 4423.708 kb on - strand, within Echvi_3717 at 4423.708 kb on - strand, within Echvi_3717 at 4423.745 kb on + strand at 4423.745 kb on + strand, within Echvi_3717 at 4423.746 kb on - strand, within Echvi_3717 at 4423.784 kb on + strand, within Echvi_3717 at 4423.784 kb on + strand, within Echvi_3717 at 4423.784 kb on + strand, within Echvi_3717 at 4423.784 kb on + strand, within Echvi_3717 at 4423.784 kb on + strand, within Echvi_3717 at 4423.784 kb on + strand, within Echvi_3717 at 4423.784 kb on + strand, within Echvi_3717 at 4423.784 kb on + strand, within Echvi_3717 at 4423.785 kb on - strand, within Echvi_3717 at 4423.785 kb on - strand, within Echvi_3717 at 4423.785 kb on - strand, within Echvi_3717 at 4423.787 kb on - strand, within Echvi_3717 at 4423.787 kb on - strand, within Echvi_3717 at 4423.787 kb on - strand, within Echvi_3717 at 4423.883 kb on + strand, within Echvi_3717 at 4423.910 kb on - strand, within Echvi_3717 at 4424.017 kb on - strand, within Echvi_3717 at 4424.100 kb on + strand, within Echvi_3717 at 4424.101 kb on - strand, within Echvi_3717 at 4424.322 kb on + strand at 4424.327 kb on - strand at 4424.335 kb on + strand at 4424.336 kb on - strand at 4424.458 kb on + strand at 4424.543 kb on + strand at 4424.555 kb on + strand at 4425.504 kb on + strand at 4425.516 kb on - strand at 4426.130 kb on + strand at 4426.160 kb on - strand at 4426.164 kb on - strand at 4426.164 kb on - strand at 4426.164 kb on - strand at 4426.164 kb on - strand at 4426.164 kb on - strand at 4426.176 kb on + strand at 4426.176 kb on + strand at 4426.177 kb on - strand at 4426.187 kb on + strand at 4426.188 kb on - strand at 4426.207 kb on - strand at 4426.220 kb on + strand at 4426.220 kb on + strand at 4426.221 kb on - strand at 4426.224 kb on + strand at 4426.224 kb on + strand at 4426.225 kb on - strand at 4426.234 kb on + strand at 4426.242 kb on - strand at 4426.242 kb on - strand at 4426.274 kb on + strand at 4426.275 kb on - strand at 4426.275 kb on - strand at 4426.292 kb on + strand at 4426.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 4,423,628 - Echvi_3717 0.70 -0.1 4,423,707 + Echvi_3717 0.73 +1.5 4,423,707 + Echvi_3717 0.73 -0.0 4,423,708 - Echvi_3717 0.73 -0.4 4,423,708 - Echvi_3717 0.73 -0.5 4,423,745 + +2.1 4,423,745 + Echvi_3717 0.75 +0.3 4,423,746 - Echvi_3717 0.75 +0.9 4,423,784 + Echvi_3717 0.76 -0.8 4,423,784 + Echvi_3717 0.76 -0.2 4,423,784 + Echvi_3717 0.76 +0.3 4,423,784 + Echvi_3717 0.76 +0.5 4,423,784 + Echvi_3717 0.76 +0.0 4,423,784 + Echvi_3717 0.76 +0.4 4,423,784 + Echvi_3717 0.76 +0.8 4,423,784 + Echvi_3717 0.76 -0.2 4,423,785 - Echvi_3717 0.76 +0.8 4,423,785 - Echvi_3717 0.76 -0.2 4,423,785 - Echvi_3717 0.76 +1.7 4,423,787 - Echvi_3717 0.77 -0.2 4,423,787 - Echvi_3717 0.77 +1.1 4,423,787 - Echvi_3717 0.77 -0.1 4,423,883 + Echvi_3717 0.81 +0.7 4,423,910 - Echvi_3717 0.82 -0.3 4,424,017 - Echvi_3717 0.86 +0.6 4,424,100 + Echvi_3717 0.89 +0.2 4,424,101 - Echvi_3717 0.90 +1.2 4,424,322 + +0.4 4,424,327 - -0.1 4,424,335 + +0.1 4,424,336 - +0.3 4,424,458 + +0.3 4,424,543 + +0.0 4,424,555 + -1.6 4,425,504 + -0.7 4,425,516 - -0.7 4,426,130 + +0.8 4,426,160 - +0.5 4,426,164 - +1.3 4,426,164 - -0.2 4,426,164 - +1.6 4,426,164 - +1.0 4,426,164 - +0.1 4,426,176 + -2.6 4,426,176 + +0.4 4,426,177 - -1.0 4,426,187 + +1.8 4,426,188 - -0.6 4,426,207 - -0.3 4,426,220 + +1.0 4,426,220 + +0.9 4,426,221 - +0.1 4,426,224 + +1.6 4,426,224 + +1.1 4,426,225 - +0.3 4,426,234 + -1.4 4,426,242 - -1.6 4,426,242 - -1.9 4,426,274 + +0.4 4,426,275 - -0.5 4,426,275 - +1.3 4,426,292 + +0.1 4,426,293 - +0.5
Or see this region's nucleotide sequence