Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3061

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3058 and Echvi_3059 are separated by 26 nucleotidesEchvi_3059 and Echvi_3060 are separated by 3 nucleotidesEchvi_3060 and Echvi_3061 overlap by 4 nucleotidesEchvi_3061 and Echvi_3062 are separated by 129 nucleotides Echvi_3058: Echvi_3058 - Protein of unknown function (DUF1094)., at 3,652,477 to 3,652,896 _3058 Echvi_3059: Echvi_3059 - FeS assembly SUF system protein, at 3,652,923 to 3,653,264 _3059 Echvi_3060: Echvi_3060 - SufE protein probably involved in Fe-S center assembly, at 3,653,268 to 3,653,699 _3060 Echvi_3061: Echvi_3061 - cysteine desulfurases, SufS subfamily, at 3,653,696 to 3,654,919 _3061 Echvi_3062: Echvi_3062 - FeS assembly protein SufD, at 3,655,049 to 3,656,299 _3062 Position (kb) 3653 3654 3655Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3652.768 kb on - strand, within Echvi_3058at 3652.876 kb on + strandat 3652.897 kb on - strandat 3652.915 kb on + strandat 3652.916 kb on - strandat 3652.916 kb on - strandat 3652.924 kb on + strandat 3653.265 kb on - strandat 3654.987 kb on - strandat 3655.016 kb on - strandat 3655.051 kb on - strandat 3655.053 kb on - strandat 3655.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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3,652,768 - Echvi_3058 0.69 -0.3
3,652,876 + +3.1
3,652,897 - +0.3
3,652,915 + +0.9
3,652,916 - +0.1
3,652,916 - -2.6
3,652,924 + +2.1
3,653,265 - +0.6
3,654,987 - -0.4
3,655,016 - -0.9
3,655,051 - +0.1
3,655,053 - +0.1
3,655,053 - -1.2

Or see this region's nucleotide sequence