Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3058 and Echvi_3059 are separated by 26 nucleotides Echvi_3059 and Echvi_3060 are separated by 3 nucleotides Echvi_3060 and Echvi_3061 overlap by 4 nucleotides Echvi_3061 and Echvi_3062 are separated by 129 nucleotides
Echvi_3058: Echvi_3058 - Protein of unknown function (DUF1094)., at 3,652,477 to 3,652,896
_3058
Echvi_3059: Echvi_3059 - FeS assembly SUF system protein, at 3,652,923 to 3,653,264
_3059
Echvi_3060: Echvi_3060 - SufE protein probably involved in Fe-S center assembly, at 3,653,268 to 3,653,699
_3060
Echvi_3061: Echvi_3061 - cysteine desulfurases, SufS subfamily, at 3,653,696 to 3,654,919
_3061
Echvi_3062: Echvi_3062 - FeS assembly protein SufD, at 3,655,049 to 3,656,299
_3062
Position (kb)
3653
3654
3655 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3652.768 kb on - strand, within Echvi_3058 at 3652.876 kb on + strand at 3652.897 kb on - strand at 3652.915 kb on + strand at 3652.916 kb on - strand at 3652.916 kb on - strand at 3652.924 kb on + strand at 3653.265 kb on - strand at 3654.987 kb on - strand at 3655.016 kb on - strand at 3655.051 kb on - strand at 3655.053 kb on - strand at 3655.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 3,652,768 - Echvi_3058 0.69 -0.3 3,652,876 + +3.1 3,652,897 - +0.3 3,652,915 + +0.9 3,652,916 - +0.1 3,652,916 - -2.6 3,652,924 + +2.1 3,653,265 - +0.6 3,654,987 - -0.4 3,655,016 - -0.9 3,655,051 - +0.1 3,655,053 - +0.1 3,655,053 - -1.2
Or see this region's nucleotide sequence