Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2870

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2869 and Echvi_2870 are separated by 300 nucleotidesEchvi_2870 and Echvi_2871 are separated by 101 nucleotides Echvi_2869: Echvi_2869 - hypothetical protein, at 3,439,184 to 3,439,717 _2869 Echvi_2870: Echvi_2870 - hypothetical protein, at 3,440,018 to 3,441,679 _2870 Echvi_2871: Echvi_2871 - Predicted transcriptional regulator, at 3,441,781 to 3,442,722 _2871 Position (kb) 3440 3441 3442Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3439.074 kb on - strandat 3439.234 kb on + strandat 3439.234 kb on + strandat 3439.234 kb on + strandat 3439.235 kb on - strandat 3439.235 kb on - strandat 3439.284 kb on + strand, within Echvi_2869at 3439.284 kb on + strand, within Echvi_2869at 3439.285 kb on - strand, within Echvi_2869at 3439.285 kb on - strand, within Echvi_2869at 3439.285 kb on - strand, within Echvi_2869at 3439.285 kb on - strand, within Echvi_2869at 3439.285 kb on - strand, within Echvi_2869at 3439.285 kb on - strand, within Echvi_2869at 3439.316 kb on + strand, within Echvi_2869at 3439.316 kb on + strand, within Echvi_2869at 3439.316 kb on + strand, within Echvi_2869at 3439.317 kb on - strand, within Echvi_2869at 3439.317 kb on - strand, within Echvi_2869at 3439.395 kb on + strand, within Echvi_2869at 3439.396 kb on - strand, within Echvi_2869at 3439.396 kb on - strand, within Echvi_2869at 3439.396 kb on - strand, within Echvi_2869at 3439.406 kb on - strand, within Echvi_2869at 3439.445 kb on + strand, within Echvi_2869at 3439.448 kb on + strand, within Echvi_2869at 3439.484 kb on - strand, within Echvi_2869at 3439.484 kb on - strand, within Echvi_2869at 3439.560 kb on - strand, within Echvi_2869at 3439.565 kb on - strand, within Echvi_2869at 3439.585 kb on + strand, within Echvi_2869at 3439.588 kb on + strand, within Echvi_2869at 3439.634 kb on + strand, within Echvi_2869at 3439.634 kb on + strand, within Echvi_2869at 3439.639 kb on + strand, within Echvi_2869at 3439.640 kb on - strand, within Echvi_2869at 3439.641 kb on + strand, within Echvi_2869at 3439.641 kb on + strand, within Echvi_2869at 3439.641 kb on + strand, within Echvi_2869at 3439.642 kb on - strand, within Echvi_2869at 3439.682 kb on - strandat 3439.700 kb on - strandat 3439.770 kb on + strandat 3439.861 kb on + strandat 3439.861 kb on + strandat 3439.861 kb on + strandat 3439.862 kb on - strandat 3439.862 kb on - strandat 3439.862 kb on - strandat 3439.891 kb on + strandat 3439.954 kb on - strandat 3439.964 kb on - strandat 3439.987 kb on - strandat 3440.080 kb on + strandat 3440.178 kb on - strandat 3440.178 kb on - strandat 3440.229 kb on + strand, within Echvi_2870at 3440.229 kb on + strand, within Echvi_2870at 3440.230 kb on - strand, within Echvi_2870at 3440.230 kb on - strand, within Echvi_2870at 3440.230 kb on - strand, within Echvi_2870at 3440.230 kb on - strand, within Echvi_2870at 3440.319 kb on + strand, within Echvi_2870at 3440.320 kb on - strand, within Echvi_2870at 3440.320 kb on - strand, within Echvi_2870at 3440.328 kb on - strand, within Echvi_2870at 3440.341 kb on + strand, within Echvi_2870at 3440.341 kb on + strand, within Echvi_2870at 3440.342 kb on - strand, within Echvi_2870at 3440.342 kb on - strand, within Echvi_2870at 3440.342 kb on - strand, within Echvi_2870at 3440.368 kb on + strand, within Echvi_2870at 3440.369 kb on - strand, within Echvi_2870at 3440.397 kb on - strand, within Echvi_2870at 3440.397 kb on - strand, within Echvi_2870at 3440.481 kb on - strand, within Echvi_2870at 3440.519 kb on + strand, within Echvi_2870at 3440.520 kb on - strand, within Echvi_2870at 3440.551 kb on - strand, within Echvi_2870at 3440.589 kb on - strand, within Echvi_2870at 3440.617 kb on + strand, within Echvi_2870at 3440.642 kb on - strand, within Echvi_2870at 3440.742 kb on - strand, within Echvi_2870at 3440.755 kb on + strand, within Echvi_2870at 3440.756 kb on - strand, within Echvi_2870at 3440.780 kb on + strand, within Echvi_2870at 3440.780 kb on + strand, within Echvi_2870at 3440.780 kb on + strand, within Echvi_2870at 3440.780 kb on + strand, within Echvi_2870at 3440.781 kb on - strand, within Echvi_2870at 3440.781 kb on - strand, within Echvi_2870at 3440.781 kb on - strand, within Echvi_2870at 3440.781 kb on - strand, within Echvi_2870at 3440.781 kb on - strand, within Echvi_2870at 3440.781 kb on - strand, within Echvi_2870at 3440.785 kb on + strand, within Echvi_2870at 3440.785 kb on + strand, within Echvi_2870at 3440.786 kb on - strand, within Echvi_2870at 3440.786 kb on - strand, within Echvi_2870at 3440.802 kb on - strand, within Echvi_2870at 3440.824 kb on + strand, within Echvi_2870at 3440.825 kb on - strand, within Echvi_2870at 3440.846 kb on + strand, within Echvi_2870at 3440.846 kb on + strand, within Echvi_2870at 3440.847 kb on - strand, within Echvi_2870at 3440.909 kb on - strand, within Echvi_2870at 3440.921 kb on + strand, within Echvi_2870at 3440.964 kb on + strand, within Echvi_2870at 3440.964 kb on + strand, within Echvi_2870at 3440.964 kb on + strand, within Echvi_2870at 3440.964 kb on + strand, within Echvi_2870at 3440.964 kb on + strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3440.965 kb on - strand, within Echvi_2870at 3441.018 kb on + strand, within Echvi_2870at 3441.033 kb on + strand, within Echvi_2870at 3441.034 kb on - strand, within Echvi_2870at 3441.034 kb on - strand, within Echvi_2870at 3441.034 kb on - strand, within Echvi_2870at 3441.056 kb on - strand, within Echvi_2870at 3441.056 kb on - strand, within Echvi_2870at 3441.056 kb on - strand, within Echvi_2870at 3441.070 kb on - strand, within Echvi_2870at 3441.070 kb on - strand, within Echvi_2870at 3441.073 kb on + strand, within Echvi_2870at 3441.076 kb on - strand, within Echvi_2870at 3441.302 kb on + strand, within Echvi_2870at 3441.302 kb on + strand, within Echvi_2870at 3441.303 kb on - strand, within Echvi_2870at 3441.303 kb on - strand, within Echvi_2870at 3441.303 kb on - strand, within Echvi_2870at 3441.306 kb on + strand, within Echvi_2870at 3441.307 kb on - strand, within Echvi_2870at 3441.352 kb on - strand, within Echvi_2870at 3441.392 kb on - strand, within Echvi_2870at 3441.393 kb on + strand, within Echvi_2870at 3441.393 kb on + strand, within Echvi_2870at 3441.394 kb on - strand, within Echvi_2870at 3441.394 kb on - strand, within Echvi_2870at 3441.468 kb on + strand, within Echvi_2870at 3441.631 kb on - strandat 3441.631 kb on - strandat 3441.661 kb on + strandat 3441.662 kb on - strandat 3441.662 kb on - strandat 3441.667 kb on + strandat 3441.667 kb on + strandat 3441.671 kb on - strandat 3441.693 kb on + strandat 3441.696 kb on + strandat 3441.748 kb on + strandat 3441.748 kb on + strandat 3441.749 kb on - strandat 3441.861 kb on + strandat 3441.906 kb on + strand, within Echvi_2871at 3441.976 kb on - strand, within Echvi_2871at 3441.992 kb on + strand, within Echvi_2871at 3441.997 kb on + strand, within Echvi_2871at 3442.045 kb on + strand, within Echvi_2871at 3442.045 kb on + strand, within Echvi_2871at 3442.045 kb on + strand, within Echvi_2871at 3442.046 kb on - strand, within Echvi_2871at 3442.046 kb on - strand, within Echvi_2871at 3442.046 kb on - strand, within Echvi_2871at 3442.046 kb on - strand, within Echvi_2871at 3442.046 kb on - strand, within Echvi_2871at 3442.046 kb on - strand, within Echvi_2871at 3442.100 kb on + strand, within Echvi_2871at 3442.231 kb on + strand, within Echvi_2871at 3442.231 kb on + strand, within Echvi_2871at 3442.232 kb on - strand, within Echvi_2871at 3442.232 kb on - strand, within Echvi_2871at 3442.235 kb on - strand, within Echvi_2871at 3442.243 kb on - strand, within Echvi_2871at 3442.294 kb on - strand, within Echvi_2871at 3442.370 kb on + strand, within Echvi_2871at 3442.371 kb on - strand, within Echvi_2871at 3442.384 kb on - strand, within Echvi_2871at 3442.529 kb on - strand, within Echvi_2871at 3442.529 kb on - strand, within Echvi_2871at 3442.534 kb on + strand, within Echvi_2871at 3442.535 kb on - strand, within Echvi_2871at 3442.535 kb on - strand, within Echvi_2871at 3442.551 kb on + strand, within Echvi_2871at 3442.552 kb on - strand, within Echvi_2871at 3442.556 kb on - strand, within Echvi_2871at 3442.559 kb on - strand, within Echvi_2871at 3442.559 kb on - strand, within Echvi_2871at 3442.584 kb on - strand, within Echvi_2871at 3442.658 kb on - strandat 3442.658 kb on - strandat 3442.658 kb on - strandat 3442.658 kb on - strandat 3442.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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3,439,074 - -0.2
3,439,234 + +0.1
3,439,234 + -2.1
3,439,234 + -1.3
3,439,235 - +0.2
3,439,235 - +0.5
3,439,284 + Echvi_2869 0.19 -0.1
3,439,284 + Echvi_2869 0.19 -1.6
3,439,285 - Echvi_2869 0.19 +0.8
3,439,285 - Echvi_2869 0.19 +2.8
3,439,285 - Echvi_2869 0.19 -0.9
3,439,285 - Echvi_2869 0.19 +2.3
3,439,285 - Echvi_2869 0.19 +0.5
3,439,285 - Echvi_2869 0.19 +0.9
3,439,316 + Echvi_2869 0.25 -1.1
3,439,316 + Echvi_2869 0.25 -0.2
3,439,316 + Echvi_2869 0.25 -0.3
3,439,317 - Echvi_2869 0.25 +1.0
3,439,317 - Echvi_2869 0.25 +1.4
3,439,395 + Echvi_2869 0.40 -0.9
3,439,396 - Echvi_2869 0.40 +0.7
3,439,396 - Echvi_2869 0.40 +0.4
3,439,396 - Echvi_2869 0.40 -0.1
3,439,406 - Echvi_2869 0.42 -1.2
3,439,445 + Echvi_2869 0.49 -0.4
3,439,448 + Echvi_2869 0.49 -1.5
3,439,484 - Echvi_2869 0.56 -1.2
3,439,484 - Echvi_2869 0.56 +0.0
3,439,560 - Echvi_2869 0.70 -2.4
3,439,565 - Echvi_2869 0.71 -0.4
3,439,585 + Echvi_2869 0.75 -0.5
3,439,588 + Echvi_2869 0.76 -2.1
3,439,634 + Echvi_2869 0.84 +2.5
3,439,634 + Echvi_2869 0.84 -1.1
3,439,639 + Echvi_2869 0.85 -1.0
3,439,640 - Echvi_2869 0.85 -0.3
3,439,641 + Echvi_2869 0.86 -1.6
3,439,641 + Echvi_2869 0.86 -1.2
3,439,641 + Echvi_2869 0.86 -0.0
3,439,642 - Echvi_2869 0.86 -0.3
3,439,682 - +0.5
3,439,700 - +1.6
3,439,770 + +0.3
3,439,861 + -0.7
3,439,861 + +0.5
3,439,861 + +0.6
3,439,862 - -1.0
3,439,862 - -0.9
3,439,862 - +0.8
3,439,891 + +0.5
3,439,954 - +1.5
3,439,964 - +1.4
3,439,987 - +1.0
3,440,080 + +1.1
3,440,178 - +1.0
3,440,178 - +1.9
3,440,229 + Echvi_2870 0.13 -1.4
3,440,229 + Echvi_2870 0.13 +1.5
3,440,230 - Echvi_2870 0.13 +0.7
3,440,230 - Echvi_2870 0.13 +2.1
3,440,230 - Echvi_2870 0.13 -0.8
3,440,230 - Echvi_2870 0.13 +1.6
3,440,319 + Echvi_2870 0.18 -0.1
3,440,320 - Echvi_2870 0.18 +1.9
3,440,320 - Echvi_2870 0.18 +1.0
3,440,328 - Echvi_2870 0.19 -0.3
3,440,341 + Echvi_2870 0.19 -1.1
3,440,341 + Echvi_2870 0.19 +0.8
3,440,342 - Echvi_2870 0.19 +0.8
3,440,342 - Echvi_2870 0.19 +1.1
3,440,342 - Echvi_2870 0.19 -0.3
3,440,368 + Echvi_2870 0.21 +0.9
3,440,369 - Echvi_2870 0.21 +1.7
3,440,397 - Echvi_2870 0.23 +0.8
3,440,397 - Echvi_2870 0.23 +0.7
3,440,481 - Echvi_2870 0.28 +0.1
3,440,519 + Echvi_2870 0.30 +1.2
3,440,520 - Echvi_2870 0.30 +2.5
3,440,551 - Echvi_2870 0.32 -0.4
3,440,589 - Echvi_2870 0.34 +1.2
3,440,617 + Echvi_2870 0.36 +0.7
3,440,642 - Echvi_2870 0.38 +0.9
3,440,742 - Echvi_2870 0.44 +2.1
3,440,755 + Echvi_2870 0.44 -0.5
3,440,756 - Echvi_2870 0.44 +1.7
3,440,780 + Echvi_2870 0.46 -0.0
3,440,780 + Echvi_2870 0.46 +1.2
3,440,780 + Echvi_2870 0.46 +0.7
3,440,780 + Echvi_2870 0.46 +2.1
3,440,781 - Echvi_2870 0.46 +1.7
3,440,781 - Echvi_2870 0.46 -0.9
3,440,781 - Echvi_2870 0.46 -0.2
3,440,781 - Echvi_2870 0.46 +0.6
3,440,781 - Echvi_2870 0.46 +0.7
3,440,781 - Echvi_2870 0.46 +0.5
3,440,785 + Echvi_2870 0.46 +2.4
3,440,785 + Echvi_2870 0.46 -1.1
3,440,786 - Echvi_2870 0.46 +3.4
3,440,786 - Echvi_2870 0.46 +1.0
3,440,802 - Echvi_2870 0.47 +1.9
3,440,824 + Echvi_2870 0.48 -0.5
3,440,825 - Echvi_2870 0.49 +1.5
3,440,846 + Echvi_2870 0.50 -0.5
3,440,846 + Echvi_2870 0.50 +0.7
3,440,847 - Echvi_2870 0.50 +1.0
3,440,909 - Echvi_2870 0.54 +1.6
3,440,921 + Echvi_2870 0.54 -0.6
3,440,964 + Echvi_2870 0.57 +0.8
3,440,964 + Echvi_2870 0.57 +2.9
3,440,964 + Echvi_2870 0.57 +0.8
3,440,964 + Echvi_2870 0.57 +1.5
3,440,964 + Echvi_2870 0.57 +0.5
3,440,965 - Echvi_2870 0.57 +1.5
3,440,965 - Echvi_2870 0.57 +1.2
3,440,965 - Echvi_2870 0.57 +1.5
3,440,965 - Echvi_2870 0.57 +2.4
3,440,965 - Echvi_2870 0.57 +1.4
3,440,965 - Echvi_2870 0.57 +0.8
3,440,965 - Echvi_2870 0.57 +1.1
3,440,965 - Echvi_2870 0.57 +1.6
3,440,965 - Echvi_2870 0.57 -1.1
3,440,965 - Echvi_2870 0.57 -2.0
3,440,965 - Echvi_2870 0.57 +0.9
3,441,018 + Echvi_2870 0.60 +0.7
3,441,033 + Echvi_2870 0.61 +1.4
3,441,034 - Echvi_2870 0.61 +0.1
3,441,034 - Echvi_2870 0.61 +0.3
3,441,034 - Echvi_2870 0.61 +0.8
3,441,056 - Echvi_2870 0.62 +1.0
3,441,056 - Echvi_2870 0.62 +0.7
3,441,056 - Echvi_2870 0.62 +2.2
3,441,070 - Echvi_2870 0.63 +0.7
3,441,070 - Echvi_2870 0.63 +0.1
3,441,073 + Echvi_2870 0.63 +0.1
3,441,076 - Echvi_2870 0.64 +1.7
3,441,302 + Echvi_2870 0.77 +0.7
3,441,302 + Echvi_2870 0.77 +1.3
3,441,303 - Echvi_2870 0.77 +2.2
3,441,303 - Echvi_2870 0.77 +2.0
3,441,303 - Echvi_2870 0.77 +2.3
3,441,306 + Echvi_2870 0.77 -1.4
3,441,307 - Echvi_2870 0.78 -1.1
3,441,352 - Echvi_2870 0.80 +1.0
3,441,392 - Echvi_2870 0.83 +0.4
3,441,393 + Echvi_2870 0.83 +1.8
3,441,393 + Echvi_2870 0.83 +2.1
3,441,394 - Echvi_2870 0.83 +1.1
3,441,394 - Echvi_2870 0.83 +1.3
3,441,468 + Echvi_2870 0.87 +1.8
3,441,631 - +0.9
3,441,631 - +0.6
3,441,661 + +1.6
3,441,662 - -0.1
3,441,662 - -1.3
3,441,667 + -0.0
3,441,667 + -3.1
3,441,671 - -2.1
3,441,693 + -0.5
3,441,696 + +0.1
3,441,748 + -0.5
3,441,748 + -0.4
3,441,749 - -2.4
3,441,861 + -0.6
3,441,906 + Echvi_2871 0.13 +0.6
3,441,976 - Echvi_2871 0.21 -0.3
3,441,992 + Echvi_2871 0.22 +0.6
3,441,997 + Echvi_2871 0.23 +0.1
3,442,045 + Echvi_2871 0.28 -3.3
3,442,045 + Echvi_2871 0.28 +1.2
3,442,045 + Echvi_2871 0.28 -0.1
3,442,046 - Echvi_2871 0.28 +0.4
3,442,046 - Echvi_2871 0.28 +0.1
3,442,046 - Echvi_2871 0.28 +0.6
3,442,046 - Echvi_2871 0.28 -1.3
3,442,046 - Echvi_2871 0.28 +0.5
3,442,046 - Echvi_2871 0.28 -1.2
3,442,100 + Echvi_2871 0.34 +0.4
3,442,231 + Echvi_2871 0.48 +0.1
3,442,231 + Echvi_2871 0.48 -0.1
3,442,232 - Echvi_2871 0.48 -2.3
3,442,232 - Echvi_2871 0.48 +0.1
3,442,235 - Echvi_2871 0.48 +1.2
3,442,243 - Echvi_2871 0.49 +0.9
3,442,294 - Echvi_2871 0.54 -2.2
3,442,370 + Echvi_2871 0.63 -0.3
3,442,371 - Echvi_2871 0.63 +1.9
3,442,384 - Echvi_2871 0.64 +1.4
3,442,529 - Echvi_2871 0.79 +0.4
3,442,529 - Echvi_2871 0.79 -0.7
3,442,534 + Echvi_2871 0.80 -1.0
3,442,535 - Echvi_2871 0.80 +0.4
3,442,535 - Echvi_2871 0.80 +0.8
3,442,551 + Echvi_2871 0.82 -1.2
3,442,552 - Echvi_2871 0.82 +1.1
3,442,556 - Echvi_2871 0.82 +1.1
3,442,559 - Echvi_2871 0.83 -0.5
3,442,559 - Echvi_2871 0.83 -1.8
3,442,584 - Echvi_2871 0.85 +1.3
3,442,658 - +0.1
3,442,658 - -0.4
3,442,658 - +1.0
3,442,658 - -0.4
3,442,658 - +0.3

Or see this region's nucleotide sequence