Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2835 and Echvi_2836 are separated by 260 nucleotides Echvi_2836 and Echvi_2837 are separated by 48 nucleotides Echvi_2837 and Echvi_2838 overlap by 4 nucleotides
Echvi_2835: Echvi_2835 - RND family efflux transporter, MFP subunit, at 3,395,814 to 3,397,100
_2835
Echvi_2836: Echvi_2836 - hypothetical protein, at 3,397,361 to 3,398,230
_2836
Echvi_2837: Echvi_2837 - hypothetical protein, at 3,398,279 to 3,399,187
_2837
Echvi_2838: Echvi_2838 - Cytosine/adenosine deaminases, at 3,399,184 to 3,399,621
_2838
Position (kb)
3397
3398
3399 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3396.437 kb on + strand, within Echvi_2835 at 3396.448 kb on + strand, within Echvi_2835 at 3396.449 kb on - strand, within Echvi_2835 at 3396.624 kb on + strand, within Echvi_2835 at 3396.647 kb on + strand, within Echvi_2835 at 3396.728 kb on - strand, within Echvi_2835 at 3396.778 kb on - strand, within Echvi_2835 at 3396.913 kb on + strand, within Echvi_2835 at 3396.913 kb on + strand, within Echvi_2835 at 3397.003 kb on + strand at 3397.004 kb on - strand at 3397.135 kb on - strand at 3397.193 kb on + strand at 3397.194 kb on - strand at 3397.218 kb on + strand at 3397.234 kb on + strand at 3397.234 kb on + strand at 3397.234 kb on + strand at 3397.235 kb on - strand at 3397.235 kb on - strand at 3397.283 kb on + strand at 3397.283 kb on + strand at 3397.300 kb on + strand at 3397.301 kb on - strand at 3397.331 kb on + strand at 3397.357 kb on + strand at 3397.358 kb on - strand at 3397.363 kb on - strand at 3397.372 kb on + strand at 3397.373 kb on - strand at 3397.373 kb on - strand at 3397.373 kb on - strand at 3397.384 kb on + strand at 3397.384 kb on + strand at 3397.389 kb on - strand at 3397.418 kb on + strand at 3397.517 kb on + strand, within Echvi_2836 at 3397.539 kb on + strand, within Echvi_2836 at 3397.540 kb on - strand, within Echvi_2836 at 3397.550 kb on + strand, within Echvi_2836 at 3397.551 kb on - strand, within Echvi_2836 at 3397.599 kb on + strand, within Echvi_2836 at 3397.600 kb on - strand, within Echvi_2836 at 3397.724 kb on + strand, within Echvi_2836 at 3397.725 kb on - strand, within Echvi_2836 at 3397.790 kb on + strand, within Echvi_2836 at 3397.790 kb on + strand, within Echvi_2836 at 3397.866 kb on + strand, within Echvi_2836 at 3397.866 kb on + strand, within Echvi_2836 at 3397.933 kb on + strand, within Echvi_2836 at 3397.951 kb on + strand, within Echvi_2836 at 3397.976 kb on - strand, within Echvi_2836 at 3398.029 kb on + strand, within Echvi_2836 at 3398.030 kb on - strand, within Echvi_2836 at 3398.137 kb on + strand, within Echvi_2836 at 3398.281 kb on - strand at 3398.340 kb on - strand at 3398.377 kb on - strand, within Echvi_2837 at 3398.377 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.382 kb on - strand, within Echvi_2837 at 3398.383 kb on + strand, within Echvi_2837 at 3398.512 kb on - strand, within Echvi_2837 at 3398.539 kb on + strand, within Echvi_2837 at 3398.540 kb on - strand, within Echvi_2837 at 3398.551 kb on - strand, within Echvi_2837 at 3398.652 kb on + strand, within Echvi_2837 at 3398.736 kb on + strand, within Echvi_2837 at 3398.760 kb on + strand, within Echvi_2837 at 3398.761 kb on - strand, within Echvi_2837 at 3398.762 kb on + strand, within Echvi_2837 at 3398.847 kb on + strand, within Echvi_2837 at 3398.848 kb on - strand, within Echvi_2837 at 3398.848 kb on - strand, within Echvi_2837 at 3398.849 kb on + strand, within Echvi_2837 at 3398.868 kb on - strand, within Echvi_2837 at 3398.913 kb on + strand, within Echvi_2837 at 3398.913 kb on + strand, within Echvi_2837 at 3398.914 kb on - strand, within Echvi_2837 at 3398.917 kb on + strand, within Echvi_2837 at 3398.951 kb on + strand, within Echvi_2837 at 3398.951 kb on + strand, within Echvi_2837 at 3399.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 3,396,437 + Echvi_2835 0.48 -1.4 3,396,448 + Echvi_2835 0.49 -1.1 3,396,449 - Echvi_2835 0.49 +0.2 3,396,624 + Echvi_2835 0.63 -1.9 3,396,647 + Echvi_2835 0.65 +1.0 3,396,728 - Echvi_2835 0.71 -1.1 3,396,778 - Echvi_2835 0.75 -0.3 3,396,913 + Echvi_2835 0.85 -0.8 3,396,913 + Echvi_2835 0.85 +0.1 3,397,003 + -0.1 3,397,004 - -0.8 3,397,135 - +1.6 3,397,193 + +0.7 3,397,194 - +0.9 3,397,218 + +0.3 3,397,234 + +1.3 3,397,234 + -1.7 3,397,234 + +0.4 3,397,235 - -2.2 3,397,235 - +0.3 3,397,283 + -1.9 3,397,283 + +0.1 3,397,300 + -1.5 3,397,301 - -0.2 3,397,331 + +0.5 3,397,357 + -1.7 3,397,358 - -0.9 3,397,363 - +0.8 3,397,372 + +0.5 3,397,373 - -1.3 3,397,373 - +1.0 3,397,373 - -0.8 3,397,384 + +3.5 3,397,384 + -1.1 3,397,389 - -0.7 3,397,418 + +2.5 3,397,517 + Echvi_2836 0.18 +1.1 3,397,539 + Echvi_2836 0.20 +1.3 3,397,540 - Echvi_2836 0.21 -1.5 3,397,550 + Echvi_2836 0.22 +2.8 3,397,551 - Echvi_2836 0.22 +2.1 3,397,599 + Echvi_2836 0.27 +0.7 3,397,600 - Echvi_2836 0.27 +1.1 3,397,724 + Echvi_2836 0.42 +0.6 3,397,725 - Echvi_2836 0.42 +1.0 3,397,790 + Echvi_2836 0.49 -0.7 3,397,790 + Echvi_2836 0.49 +1.0 3,397,866 + Echvi_2836 0.58 +2.8 3,397,866 + Echvi_2836 0.58 +2.0 3,397,933 + Echvi_2836 0.66 +0.7 3,397,951 + Echvi_2836 0.68 +2.2 3,397,976 - Echvi_2836 0.71 +2.1 3,398,029 + Echvi_2836 0.77 +0.9 3,398,030 - Echvi_2836 0.77 -0.2 3,398,137 + Echvi_2836 0.89 +1.7 3,398,281 - -0.9 3,398,340 - +3.1 3,398,377 - Echvi_2837 0.11 +1.4 3,398,377 - Echvi_2837 0.11 +0.7 3,398,382 - Echvi_2837 0.11 +0.6 3,398,382 - Echvi_2837 0.11 +1.0 3,398,382 - Echvi_2837 0.11 +0.6 3,398,382 - Echvi_2837 0.11 +1.1 3,398,382 - Echvi_2837 0.11 +1.1 3,398,383 + Echvi_2837 0.11 +0.2 3,398,512 - Echvi_2837 0.26 +0.9 3,398,539 + Echvi_2837 0.29 +0.4 3,398,540 - Echvi_2837 0.29 +0.1 3,398,551 - Echvi_2837 0.30 -0.5 3,398,652 + Echvi_2837 0.41 -0.0 3,398,736 + Echvi_2837 0.50 +0.5 3,398,760 + Echvi_2837 0.53 -0.1 3,398,761 - Echvi_2837 0.53 -0.9 3,398,762 + Echvi_2837 0.53 +1.2 3,398,847 + Echvi_2837 0.62 +0.1 3,398,848 - Echvi_2837 0.63 -1.5 3,398,848 - Echvi_2837 0.63 -1.2 3,398,849 + Echvi_2837 0.63 -2.2 3,398,868 - Echvi_2837 0.65 +0.5 3,398,913 + Echvi_2837 0.70 +0.5 3,398,913 + Echvi_2837 0.70 +1.3 3,398,914 - Echvi_2837 0.70 +0.0 3,398,917 + Echvi_2837 0.70 +0.7 3,398,951 + Echvi_2837 0.74 +0.5 3,398,951 + Echvi_2837 0.74 +0.6 3,399,155 - +0.4
Or see this region's nucleotide sequence