Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2783 and Echvi_2784 are separated by 82 nucleotides Echvi_2784 and Echvi_2785 are separated by 174 nucleotides Echvi_2785 and Echvi_2786 are separated by 45 nucleotides Echvi_2786 and Echvi_2787 are separated by 60 nucleotides Echvi_2787 and Echvi_2788 are separated by 54 nucleotides
Echvi_2783: Echvi_2783 - signal peptide peptidase SppA, 67K type, at 3,326,742 to 3,328,499
_2783
Echvi_2784: Echvi_2784 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 3,328,582 to 3,329,058
_2784
Echvi_2785: Echvi_2785 - putative efflux protein, MATE family, at 3,329,233 to 3,330,624
_2785
Echvi_2786: Echvi_2786 - hypothetical protein, at 3,330,670 to 3,330,843
_2786
Echvi_2787: Echvi_2787 - HopJ type III effector protein., at 3,330,904 to 3,331,317
_2787
Echvi_2788: Echvi_2788 - hypothetical protein, at 3,331,372 to 3,332,004
_2788
Position (kb)
3329
3330
3331 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3328.271 kb on + strand, within Echvi_2783 at 3328.311 kb on - strand, within Echvi_2783 at 3328.371 kb on - strand at 3328.485 kb on - strand at 3328.504 kb on + strand at 3328.504 kb on + strand at 3328.543 kb on + strand at 3328.547 kb on + strand at 3328.581 kb on + strand at 3328.581 kb on + strand at 3328.581 kb on + strand at 3328.592 kb on + strand at 3328.592 kb on + strand at 3328.593 kb on - strand at 3329.048 kb on + strand at 3329.048 kb on + strand at 3329.056 kb on + strand at 3329.090 kb on + strand at 3329.091 kb on - strand at 3329.099 kb on + strand at 3329.172 kb on - strand at 3329.186 kb on - strand at 3329.186 kb on - strand at 3329.217 kb on - strand at 3329.217 kb on - strand at 3329.218 kb on + strand at 3329.228 kb on + strand at 3329.229 kb on - strand at 3329.232 kb on + strand at 3329.233 kb on - strand at 3329.250 kb on + strand at 3329.250 kb on + strand at 3329.250 kb on + strand at 3329.250 kb on + strand at 3329.296 kb on - strand at 3329.307 kb on + strand at 3329.326 kb on + strand at 3329.326 kb on + strand at 3329.327 kb on - strand at 3329.381 kb on + strand, within Echvi_2785 at 3329.381 kb on + strand, within Echvi_2785 at 3329.382 kb on - strand, within Echvi_2785 at 3329.396 kb on + strand, within Echvi_2785 at 3329.400 kb on + strand, within Echvi_2785 at 3329.568 kb on + strand, within Echvi_2785 at 3329.568 kb on + strand, within Echvi_2785 at 3329.569 kb on - strand, within Echvi_2785 at 3329.569 kb on - strand, within Echvi_2785 at 3329.569 kb on - strand, within Echvi_2785 at 3329.661 kb on - strand, within Echvi_2785 at 3329.704 kb on - strand, within Echvi_2785 at 3329.704 kb on - strand, within Echvi_2785 at 3329.704 kb on - strand, within Echvi_2785 at 3329.711 kb on + strand, within Echvi_2785 at 3329.712 kb on - strand, within Echvi_2785 at 3329.712 kb on - strand, within Echvi_2785 at 3329.712 kb on - strand, within Echvi_2785 at 3329.712 kb on - strand, within Echvi_2785 at 3329.776 kb on - strand, within Echvi_2785 at 3329.776 kb on - strand, within Echvi_2785 at 3329.776 kb on - strand, within Echvi_2785 at 3329.776 kb on - strand, within Echvi_2785 at 3329.781 kb on - strand, within Echvi_2785 at 3329.781 kb on - strand, within Echvi_2785 at 3329.817 kb on + strand, within Echvi_2785 at 3329.981 kb on - strand, within Echvi_2785 at 3329.983 kb on - strand, within Echvi_2785 at 3329.983 kb on - strand, within Echvi_2785 at 3330.106 kb on - strand, within Echvi_2785 at 3330.106 kb on - strand, within Echvi_2785 at 3330.129 kb on - strand, within Echvi_2785 at 3330.137 kb on + strand, within Echvi_2785 at 3330.244 kb on + strand, within Echvi_2785 at 3330.261 kb on - strand, within Echvi_2785 at 3330.299 kb on - strand, within Echvi_2785 at 3330.341 kb on + strand, within Echvi_2785 at 3330.396 kb on + strand, within Echvi_2785 at 3330.433 kb on - strand, within Echvi_2785 at 3330.449 kb on + strand, within Echvi_2785 at 3330.449 kb on + strand, within Echvi_2785 at 3330.450 kb on - strand, within Echvi_2785 at 3330.493 kb on + strand at 3330.494 kb on - strand at 3330.494 kb on - strand at 3330.537 kb on + strand at 3330.538 kb on - strand at 3330.539 kb on + strand at 3330.539 kb on + strand at 3330.540 kb on - strand at 3330.585 kb on + strand at 3330.620 kb on + strand at 3330.621 kb on - strand at 3330.622 kb on + strand at 3330.622 kb on + strand at 3330.635 kb on + strand at 3330.830 kb on + strand at 3330.830 kb on + strand at 3330.830 kb on + strand at 3330.830 kb on + strand at 3330.831 kb on - strand at 3330.856 kb on + strand at 3330.857 kb on - strand at 3330.862 kb on + strand at 3330.937 kb on - strand at 3330.937 kb on - strand at 3331.039 kb on + strand, within Echvi_2787 at 3331.054 kb on - strand, within Echvi_2787 at 3331.056 kb on + strand, within Echvi_2787 at 3331.057 kb on - strand, within Echvi_2787 at 3331.229 kb on - strand, within Echvi_2787 at 3331.242 kb on + strand, within Echvi_2787 at 3331.242 kb on + strand, within Echvi_2787 at 3331.242 kb on + strand, within Echvi_2787 at 3331.243 kb on - strand, within Echvi_2787 at 3331.243 kb on - strand, within Echvi_2787 at 3331.246 kb on + strand, within Echvi_2787 at 3331.246 kb on + strand, within Echvi_2787 at 3331.246 kb on + strand, within Echvi_2787 at 3331.249 kb on + strand, within Echvi_2787 at 3331.250 kb on - strand, within Echvi_2787 at 3331.412 kb on + strand at 3331.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 3,328,271 + Echvi_2783 0.87 +0.1 3,328,311 - Echvi_2783 0.89 -1.1 3,328,371 - -1.1 3,328,485 - -1.8 3,328,504 + -2.1 3,328,504 + -1.5 3,328,543 + -2.0 3,328,547 + +1.6 3,328,581 + -0.4 3,328,581 + -2.4 3,328,581 + -0.7 3,328,592 + -0.6 3,328,592 + +1.4 3,328,593 - +0.9 3,329,048 + +0.8 3,329,048 + +0.1 3,329,056 + +0.1 3,329,090 + -1.2 3,329,091 - +2.0 3,329,099 + -0.1 3,329,172 - +1.0 3,329,186 - +0.2 3,329,186 - +1.1 3,329,217 - -0.2 3,329,217 - -2.6 3,329,218 + -1.7 3,329,228 + -0.2 3,329,229 - +0.6 3,329,232 + -2.8 3,329,233 - +0.2 3,329,250 + +0.7 3,329,250 + +1.5 3,329,250 + +0.6 3,329,250 + -0.5 3,329,296 - -0.2 3,329,307 + -0.9 3,329,326 + -2.4 3,329,326 + -1.1 3,329,327 - -0.5 3,329,381 + Echvi_2785 0.11 +2.1 3,329,381 + Echvi_2785 0.11 -0.6 3,329,382 - Echvi_2785 0.11 +0.3 3,329,396 + Echvi_2785 0.12 -0.4 3,329,400 + Echvi_2785 0.12 +0.9 3,329,568 + Echvi_2785 0.24 -0.9 3,329,568 + Echvi_2785 0.24 +0.6 3,329,569 - Echvi_2785 0.24 -0.9 3,329,569 - Echvi_2785 0.24 +0.1 3,329,569 - Echvi_2785 0.24 +0.7 3,329,661 - Echvi_2785 0.31 +0.4 3,329,704 - Echvi_2785 0.34 +0.3 3,329,704 - Echvi_2785 0.34 +1.8 3,329,704 - Echvi_2785 0.34 +2.0 3,329,711 + Echvi_2785 0.34 +2.9 3,329,712 - Echvi_2785 0.34 +0.5 3,329,712 - Echvi_2785 0.34 +0.5 3,329,712 - Echvi_2785 0.34 +0.5 3,329,712 - Echvi_2785 0.34 +1.2 3,329,776 - Echvi_2785 0.39 -0.9 3,329,776 - Echvi_2785 0.39 +0.3 3,329,776 - Echvi_2785 0.39 -0.3 3,329,776 - Echvi_2785 0.39 +0.1 3,329,781 - Echvi_2785 0.39 -0.0 3,329,781 - Echvi_2785 0.39 +0.7 3,329,817 + Echvi_2785 0.42 -0.7 3,329,981 - Echvi_2785 0.54 +0.6 3,329,983 - Echvi_2785 0.54 -1.8 3,329,983 - Echvi_2785 0.54 -0.1 3,330,106 - Echvi_2785 0.63 -0.1 3,330,106 - Echvi_2785 0.63 +1.0 3,330,129 - Echvi_2785 0.64 +1.2 3,330,137 + Echvi_2785 0.65 -1.5 3,330,244 + Echvi_2785 0.73 -0.2 3,330,261 - Echvi_2785 0.74 +0.6 3,330,299 - Echvi_2785 0.77 -0.9 3,330,341 + Echvi_2785 0.80 +0.5 3,330,396 + Echvi_2785 0.84 +0.1 3,330,433 - Echvi_2785 0.86 -0.9 3,330,449 + Echvi_2785 0.87 -0.2 3,330,449 + Echvi_2785 0.87 +0.6 3,330,450 - Echvi_2785 0.87 +1.2 3,330,493 + -2.9 3,330,494 - +1.0 3,330,494 - -2.0 3,330,537 + +0.9 3,330,538 - +1.3 3,330,539 + -1.8 3,330,539 + +1.6 3,330,540 - -1.6 3,330,585 + +0.0 3,330,620 + -0.2 3,330,621 - -0.5 3,330,622 + -1.5 3,330,622 + +1.9 3,330,635 + +0.0 3,330,830 + +0.4 3,330,830 + -0.9 3,330,830 + +0.8 3,330,830 + +1.1 3,330,831 - +0.1 3,330,856 + -0.1 3,330,857 - +0.6 3,330,862 + +1.9 3,330,937 - +1.5 3,330,937 - -2.2 3,331,039 + Echvi_2787 0.33 -0.5 3,331,054 - Echvi_2787 0.36 -0.0 3,331,056 + Echvi_2787 0.37 +0.7 3,331,057 - Echvi_2787 0.37 +0.1 3,331,229 - Echvi_2787 0.79 -3.0 3,331,242 + Echvi_2787 0.82 -0.7 3,331,242 + Echvi_2787 0.82 +0.1 3,331,242 + Echvi_2787 0.82 -0.8 3,331,243 - Echvi_2787 0.82 -1.6 3,331,243 - Echvi_2787 0.82 +0.5 3,331,246 + Echvi_2787 0.83 -0.5 3,331,246 + Echvi_2787 0.83 +3.1 3,331,246 + Echvi_2787 0.83 -0.6 3,331,249 + Echvi_2787 0.83 +0.7 3,331,250 - Echvi_2787 0.84 -0.6 3,331,412 + -1.6 3,331,413 - -0.1
Or see this region's nucleotide sequence