Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2785

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2783 and Echvi_2784 are separated by 82 nucleotidesEchvi_2784 and Echvi_2785 are separated by 174 nucleotidesEchvi_2785 and Echvi_2786 are separated by 45 nucleotidesEchvi_2786 and Echvi_2787 are separated by 60 nucleotidesEchvi_2787 and Echvi_2788 are separated by 54 nucleotides Echvi_2783: Echvi_2783 - signal peptide peptidase SppA, 67K type, at 3,326,742 to 3,328,499 _2783 Echvi_2784: Echvi_2784 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 3,328,582 to 3,329,058 _2784 Echvi_2785: Echvi_2785 - putative efflux protein, MATE family, at 3,329,233 to 3,330,624 _2785 Echvi_2786: Echvi_2786 - hypothetical protein, at 3,330,670 to 3,330,843 _2786 Echvi_2787: Echvi_2787 - HopJ type III effector protein., at 3,330,904 to 3,331,317 _2787 Echvi_2788: Echvi_2788 - hypothetical protein, at 3,331,372 to 3,332,004 _2788 Position (kb) 3329 3330 3331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3328.271 kb on + strand, within Echvi_2783at 3328.311 kb on - strand, within Echvi_2783at 3328.371 kb on - strandat 3328.485 kb on - strandat 3328.504 kb on + strandat 3328.504 kb on + strandat 3328.543 kb on + strandat 3328.547 kb on + strandat 3328.581 kb on + strandat 3328.581 kb on + strandat 3328.581 kb on + strandat 3328.592 kb on + strandat 3328.592 kb on + strandat 3328.593 kb on - strandat 3329.048 kb on + strandat 3329.048 kb on + strandat 3329.056 kb on + strandat 3329.090 kb on + strandat 3329.091 kb on - strandat 3329.099 kb on + strandat 3329.172 kb on - strandat 3329.186 kb on - strandat 3329.186 kb on - strandat 3329.217 kb on - strandat 3329.217 kb on - strandat 3329.218 kb on + strandat 3329.228 kb on + strandat 3329.229 kb on - strandat 3329.232 kb on + strandat 3329.233 kb on - strandat 3329.250 kb on + strandat 3329.250 kb on + strandat 3329.250 kb on + strandat 3329.250 kb on + strandat 3329.296 kb on - strandat 3329.307 kb on + strandat 3329.326 kb on + strandat 3329.326 kb on + strandat 3329.327 kb on - strandat 3329.381 kb on + strand, within Echvi_2785at 3329.381 kb on + strand, within Echvi_2785at 3329.382 kb on - strand, within Echvi_2785at 3329.396 kb on + strand, within Echvi_2785at 3329.400 kb on + strand, within Echvi_2785at 3329.568 kb on + strand, within Echvi_2785at 3329.568 kb on + strand, within Echvi_2785at 3329.569 kb on - strand, within Echvi_2785at 3329.569 kb on - strand, within Echvi_2785at 3329.569 kb on - strand, within Echvi_2785at 3329.661 kb on - strand, within Echvi_2785at 3329.704 kb on - strand, within Echvi_2785at 3329.704 kb on - strand, within Echvi_2785at 3329.704 kb on - strand, within Echvi_2785at 3329.711 kb on + strand, within Echvi_2785at 3329.712 kb on - strand, within Echvi_2785at 3329.712 kb on - strand, within Echvi_2785at 3329.712 kb on - strand, within Echvi_2785at 3329.712 kb on - strand, within Echvi_2785at 3329.776 kb on - strand, within Echvi_2785at 3329.776 kb on - strand, within Echvi_2785at 3329.776 kb on - strand, within Echvi_2785at 3329.776 kb on - strand, within Echvi_2785at 3329.781 kb on - strand, within Echvi_2785at 3329.781 kb on - strand, within Echvi_2785at 3329.817 kb on + strand, within Echvi_2785at 3329.981 kb on - strand, within Echvi_2785at 3329.983 kb on - strand, within Echvi_2785at 3329.983 kb on - strand, within Echvi_2785at 3330.106 kb on - strand, within Echvi_2785at 3330.106 kb on - strand, within Echvi_2785at 3330.129 kb on - strand, within Echvi_2785at 3330.137 kb on + strand, within Echvi_2785at 3330.244 kb on + strand, within Echvi_2785at 3330.261 kb on - strand, within Echvi_2785at 3330.299 kb on - strand, within Echvi_2785at 3330.341 kb on + strand, within Echvi_2785at 3330.396 kb on + strand, within Echvi_2785at 3330.433 kb on - strand, within Echvi_2785at 3330.449 kb on + strand, within Echvi_2785at 3330.449 kb on + strand, within Echvi_2785at 3330.450 kb on - strand, within Echvi_2785at 3330.493 kb on + strandat 3330.494 kb on - strandat 3330.494 kb on - strandat 3330.537 kb on + strandat 3330.538 kb on - strandat 3330.539 kb on + strandat 3330.539 kb on + strandat 3330.540 kb on - strandat 3330.585 kb on + strandat 3330.620 kb on + strandat 3330.621 kb on - strandat 3330.622 kb on + strandat 3330.622 kb on + strandat 3330.635 kb on + strandat 3330.830 kb on + strandat 3330.830 kb on + strandat 3330.830 kb on + strandat 3330.830 kb on + strandat 3330.831 kb on - strandat 3330.856 kb on + strandat 3330.857 kb on - strandat 3330.862 kb on + strandat 3330.937 kb on - strandat 3330.937 kb on - strandat 3331.039 kb on + strand, within Echvi_2787at 3331.054 kb on - strand, within Echvi_2787at 3331.056 kb on + strand, within Echvi_2787at 3331.057 kb on - strand, within Echvi_2787at 3331.229 kb on - strand, within Echvi_2787at 3331.242 kb on + strand, within Echvi_2787at 3331.242 kb on + strand, within Echvi_2787at 3331.242 kb on + strand, within Echvi_2787at 3331.243 kb on - strand, within Echvi_2787at 3331.243 kb on - strand, within Echvi_2787at 3331.246 kb on + strand, within Echvi_2787at 3331.246 kb on + strand, within Echvi_2787at 3331.246 kb on + strand, within Echvi_2787at 3331.249 kb on + strand, within Echvi_2787at 3331.250 kb on - strand, within Echvi_2787at 3331.412 kb on + strandat 3331.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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3,328,271 + Echvi_2783 0.87 +0.1
3,328,311 - Echvi_2783 0.89 -1.1
3,328,371 - -1.1
3,328,485 - -1.8
3,328,504 + -2.1
3,328,504 + -1.5
3,328,543 + -2.0
3,328,547 + +1.6
3,328,581 + -0.4
3,328,581 + -2.4
3,328,581 + -0.7
3,328,592 + -0.6
3,328,592 + +1.4
3,328,593 - +0.9
3,329,048 + +0.8
3,329,048 + +0.1
3,329,056 + +0.1
3,329,090 + -1.2
3,329,091 - +2.0
3,329,099 + -0.1
3,329,172 - +1.0
3,329,186 - +0.2
3,329,186 - +1.1
3,329,217 - -0.2
3,329,217 - -2.6
3,329,218 + -1.7
3,329,228 + -0.2
3,329,229 - +0.6
3,329,232 + -2.8
3,329,233 - +0.2
3,329,250 + +0.7
3,329,250 + +1.5
3,329,250 + +0.6
3,329,250 + -0.5
3,329,296 - -0.2
3,329,307 + -0.9
3,329,326 + -2.4
3,329,326 + -1.1
3,329,327 - -0.5
3,329,381 + Echvi_2785 0.11 +2.1
3,329,381 + Echvi_2785 0.11 -0.6
3,329,382 - Echvi_2785 0.11 +0.3
3,329,396 + Echvi_2785 0.12 -0.4
3,329,400 + Echvi_2785 0.12 +0.9
3,329,568 + Echvi_2785 0.24 -0.9
3,329,568 + Echvi_2785 0.24 +0.6
3,329,569 - Echvi_2785 0.24 -0.9
3,329,569 - Echvi_2785 0.24 +0.1
3,329,569 - Echvi_2785 0.24 +0.7
3,329,661 - Echvi_2785 0.31 +0.4
3,329,704 - Echvi_2785 0.34 +0.3
3,329,704 - Echvi_2785 0.34 +1.8
3,329,704 - Echvi_2785 0.34 +2.0
3,329,711 + Echvi_2785 0.34 +2.9
3,329,712 - Echvi_2785 0.34 +0.5
3,329,712 - Echvi_2785 0.34 +0.5
3,329,712 - Echvi_2785 0.34 +0.5
3,329,712 - Echvi_2785 0.34 +1.2
3,329,776 - Echvi_2785 0.39 -0.9
3,329,776 - Echvi_2785 0.39 +0.3
3,329,776 - Echvi_2785 0.39 -0.3
3,329,776 - Echvi_2785 0.39 +0.1
3,329,781 - Echvi_2785 0.39 -0.0
3,329,781 - Echvi_2785 0.39 +0.7
3,329,817 + Echvi_2785 0.42 -0.7
3,329,981 - Echvi_2785 0.54 +0.6
3,329,983 - Echvi_2785 0.54 -1.8
3,329,983 - Echvi_2785 0.54 -0.1
3,330,106 - Echvi_2785 0.63 -0.1
3,330,106 - Echvi_2785 0.63 +1.0
3,330,129 - Echvi_2785 0.64 +1.2
3,330,137 + Echvi_2785 0.65 -1.5
3,330,244 + Echvi_2785 0.73 -0.2
3,330,261 - Echvi_2785 0.74 +0.6
3,330,299 - Echvi_2785 0.77 -0.9
3,330,341 + Echvi_2785 0.80 +0.5
3,330,396 + Echvi_2785 0.84 +0.1
3,330,433 - Echvi_2785 0.86 -0.9
3,330,449 + Echvi_2785 0.87 -0.2
3,330,449 + Echvi_2785 0.87 +0.6
3,330,450 - Echvi_2785 0.87 +1.2
3,330,493 + -2.9
3,330,494 - +1.0
3,330,494 - -2.0
3,330,537 + +0.9
3,330,538 - +1.3
3,330,539 + -1.8
3,330,539 + +1.6
3,330,540 - -1.6
3,330,585 + +0.0
3,330,620 + -0.2
3,330,621 - -0.5
3,330,622 + -1.5
3,330,622 + +1.9
3,330,635 + +0.0
3,330,830 + +0.4
3,330,830 + -0.9
3,330,830 + +0.8
3,330,830 + +1.1
3,330,831 - +0.1
3,330,856 + -0.1
3,330,857 - +0.6
3,330,862 + +1.9
3,330,937 - +1.5
3,330,937 - -2.2
3,331,039 + Echvi_2787 0.33 -0.5
3,331,054 - Echvi_2787 0.36 -0.0
3,331,056 + Echvi_2787 0.37 +0.7
3,331,057 - Echvi_2787 0.37 +0.1
3,331,229 - Echvi_2787 0.79 -3.0
3,331,242 + Echvi_2787 0.82 -0.7
3,331,242 + Echvi_2787 0.82 +0.1
3,331,242 + Echvi_2787 0.82 -0.8
3,331,243 - Echvi_2787 0.82 -1.6
3,331,243 - Echvi_2787 0.82 +0.5
3,331,246 + Echvi_2787 0.83 -0.5
3,331,246 + Echvi_2787 0.83 +3.1
3,331,246 + Echvi_2787 0.83 -0.6
3,331,249 + Echvi_2787 0.83 +0.7
3,331,250 - Echvi_2787 0.84 -0.6
3,331,412 + -1.6
3,331,413 - -0.1

Or see this region's nucleotide sequence