Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2262

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2261 and Echvi_2262 are separated by 39 nucleotidesEchvi_2262 and Echvi_2263 are separated by 15 nucleotides Echvi_2261: Echvi_2261 - UDP-3-0-acyl N-acetylglucosamine deacetylase/beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ, at 2,678,263 to 2,679,657 _2261 Echvi_2262: Echvi_2262 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, at 2,679,697 to 2,680,719 _2262 Echvi_2263: Echvi_2263 - HD superfamily phosphohydrolases, at 2,680,735 to 2,681,964 _2263 Position (kb) 2679 2680 2681Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2679.681 kb on - strandat 2680.732 kb on - strandat 2680.769 kb on + strandat 2680.770 kb on - strandat 2680.770 kb on - strandat 2680.837 kb on + strandat 2680.884 kb on - strand, within Echvi_2263at 2680.944 kb on + strand, within Echvi_2263at 2680.999 kb on + strand, within Echvi_2263at 2681.051 kb on - strand, within Echvi_2263at 2681.052 kb on + strand, within Echvi_2263at 2681.172 kb on + strand, within Echvi_2263at 2681.173 kb on - strand, within Echvi_2263at 2681.174 kb on + strand, within Echvi_2263at 2681.263 kb on + strand, within Echvi_2263at 2681.263 kb on + strand, within Echvi_2263at 2681.264 kb on - strand, within Echvi_2263at 2681.283 kb on + strand, within Echvi_2263at 2681.283 kb on + strand, within Echvi_2263at 2681.303 kb on + strand, within Echvi_2263at 2681.304 kb on - strand, within Echvi_2263at 2681.316 kb on - strand, within Echvi_2263at 2681.328 kb on + strand, within Echvi_2263at 2681.347 kb on + strand, within Echvi_2263at 2681.347 kb on + strand, within Echvi_2263at 2681.354 kb on + strand, within Echvi_2263at 2681.354 kb on + strand, within Echvi_2263at 2681.355 kb on - strand, within Echvi_2263at 2681.374 kb on + strand, within Echvi_2263at 2681.375 kb on - strand, within Echvi_2263at 2681.392 kb on - strand, within Echvi_2263at 2681.471 kb on + strand, within Echvi_2263at 2681.531 kb on + strand, within Echvi_2263at 2681.532 kb on - strand, within Echvi_2263at 2681.535 kb on + strand, within Echvi_2263at 2681.552 kb on - strand, within Echvi_2263at 2681.575 kb on + strand, within Echvi_2263at 2681.645 kb on + strand, within Echvi_2263at 2681.646 kb on - strand, within Echvi_2263at 2681.679 kb on + strand, within Echvi_2263at 2681.680 kb on - strand, within Echvi_2263at 2681.680 kb on - strand, within Echvi_2263

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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2,679,681 - -0.7
2,680,732 - +1.3
2,680,769 + -1.9
2,680,770 - -2.0
2,680,770 - +0.0
2,680,837 + -0.2
2,680,884 - Echvi_2263 0.12 +0.7
2,680,944 + Echvi_2263 0.17 +0.0
2,680,999 + Echvi_2263 0.21 +0.8
2,681,051 - Echvi_2263 0.26 -1.2
2,681,052 + Echvi_2263 0.26 +2.9
2,681,172 + Echvi_2263 0.36 -0.6
2,681,173 - Echvi_2263 0.36 +0.6
2,681,174 + Echvi_2263 0.36 -1.6
2,681,263 + Echvi_2263 0.43 +0.3
2,681,263 + Echvi_2263 0.43 +1.3
2,681,264 - Echvi_2263 0.43 -0.5
2,681,283 + Echvi_2263 0.45 -2.7
2,681,283 + Echvi_2263 0.45 +0.4
2,681,303 + Echvi_2263 0.46 +0.4
2,681,304 - Echvi_2263 0.46 +0.4
2,681,316 - Echvi_2263 0.47 -1.6
2,681,328 + Echvi_2263 0.48 -2.1
2,681,347 + Echvi_2263 0.50 +0.2
2,681,347 + Echvi_2263 0.50 +0.6
2,681,354 + Echvi_2263 0.50 -2.0
2,681,354 + Echvi_2263 0.50 +0.6
2,681,355 - Echvi_2263 0.50 +0.8
2,681,374 + Echvi_2263 0.52 +0.0
2,681,375 - Echvi_2263 0.52 +1.2
2,681,392 - Echvi_2263 0.53 -1.5
2,681,471 + Echvi_2263 0.60 +0.1
2,681,531 + Echvi_2263 0.65 +0.9
2,681,532 - Echvi_2263 0.65 -0.6
2,681,535 + Echvi_2263 0.65 -0.5
2,681,552 - Echvi_2263 0.66 +0.5
2,681,575 + Echvi_2263 0.68 +0.2
2,681,645 + Echvi_2263 0.74 -1.0
2,681,646 - Echvi_2263 0.74 -1.5
2,681,679 + Echvi_2263 0.77 -0.2
2,681,680 - Echvi_2263 0.77 -0.7
2,681,680 - Echvi_2263 0.77 -0.5

Or see this region's nucleotide sequence