Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2258 and Echvi_2259 are separated by 58 nucleotides Echvi_2259 and Echvi_2260 are separated by 3 nucleotides Echvi_2260 and Echvi_2261 overlap by 4 nucleotides
Echvi_2258: Echvi_2258 - hypothetical protein, at 2,676,313 to 2,676,789
_2258
Echvi_2259: Echvi_2259 - ABC-type multidrug transport system, ATPase component, at 2,676,848 to 2,677,483
_2259
Echvi_2260: Echvi_2260 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, at 2,677,487 to 2,678,266
_2260
Echvi_2261: Echvi_2261 - UDP-3-0-acyl N-acetylglucosamine deacetylase/beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ, at 2,678,263 to 2,679,657
_2261
Position (kb)
2677
2678
2679 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2676.643 kb on + strand, within Echvi_2258 at 2676.768 kb on + strand at 2676.772 kb on - strand at 2676.772 kb on - strand at 2676.772 kb on - strand at 2676.779 kb on - strand at 2676.779 kb on - strand at 2676.789 kb on + strand at 2676.789 kb on + strand at 2676.790 kb on - strand at 2676.790 kb on - strand at 2676.790 kb on - strand at 2676.791 kb on + strand at 2676.792 kb on - strand at 2676.792 kb on - strand at 2676.824 kb on - strand at 2676.828 kb on - strand at 2676.839 kb on + strand at 2677.498 kb on - strand at 2678.282 kb on - strand at 2678.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 2,676,643 + Echvi_2258 0.69 -0.5 2,676,768 + +0.1 2,676,772 - +0.8 2,676,772 - -0.7 2,676,772 - +0.1 2,676,779 - -0.4 2,676,779 - -1.0 2,676,789 + +2.0 2,676,789 + -0.9 2,676,790 - +2.8 2,676,790 - +2.4 2,676,790 - +0.2 2,676,791 + +0.5 2,676,792 - +0.0 2,676,792 - -2.6 2,676,824 - +1.3 2,676,828 - -0.2 2,676,839 + -0.6 2,677,498 - +1.0 2,678,282 - -2.6 2,678,284 - -3.8
Or see this region's nucleotide sequence