Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2260

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2258 and Echvi_2259 are separated by 58 nucleotidesEchvi_2259 and Echvi_2260 are separated by 3 nucleotidesEchvi_2260 and Echvi_2261 overlap by 4 nucleotides Echvi_2258: Echvi_2258 - hypothetical protein, at 2,676,313 to 2,676,789 _2258 Echvi_2259: Echvi_2259 - ABC-type multidrug transport system, ATPase component, at 2,676,848 to 2,677,483 _2259 Echvi_2260: Echvi_2260 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, at 2,677,487 to 2,678,266 _2260 Echvi_2261: Echvi_2261 - UDP-3-0-acyl N-acetylglucosamine deacetylase/beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ, at 2,678,263 to 2,679,657 _2261 Position (kb) 2677 2678 2679Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2676.643 kb on + strand, within Echvi_2258at 2676.768 kb on + strandat 2676.772 kb on - strandat 2676.772 kb on - strandat 2676.772 kb on - strandat 2676.779 kb on - strandat 2676.779 kb on - strandat 2676.789 kb on + strandat 2676.789 kb on + strandat 2676.790 kb on - strandat 2676.790 kb on - strandat 2676.790 kb on - strandat 2676.791 kb on + strandat 2676.792 kb on - strandat 2676.792 kb on - strandat 2676.824 kb on - strandat 2676.828 kb on - strandat 2676.839 kb on + strandat 2677.498 kb on - strandat 2678.282 kb on - strandat 2678.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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2,676,643 + Echvi_2258 0.69 -0.5
2,676,768 + +0.1
2,676,772 - +0.8
2,676,772 - -0.7
2,676,772 - +0.1
2,676,779 - -0.4
2,676,779 - -1.0
2,676,789 + +2.0
2,676,789 + -0.9
2,676,790 - +2.8
2,676,790 - +2.4
2,676,790 - +0.2
2,676,791 + +0.5
2,676,792 - +0.0
2,676,792 - -2.6
2,676,824 - +1.3
2,676,828 - -0.2
2,676,839 + -0.6
2,677,498 - +1.0
2,678,282 - -2.6
2,678,284 - -3.8

Or see this region's nucleotide sequence