Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2215

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2213 and Echvi_2214 are separated by 79 nucleotidesEchvi_2214 and Echvi_2215 are separated by 83 nucleotidesEchvi_2215 and Echvi_2216 overlap by 13 nucleotidesEchvi_2216 and Echvi_2217 are separated by 4 nucleotides Echvi_2213: Echvi_2213 - TIGR02757 family protein, at 2,640,503 to 2,641,270 _2213 Echvi_2214: Echvi_2214 - orotate phosphoribosyltransferase, at 2,641,350 to 2,641,997 _2214 Echvi_2215: Echvi_2215 - ADP-ribose pyrophosphatase, at 2,642,081 to 2,642,767 _2215 Echvi_2216: Echvi_2216 - pantetheine-phosphate adenylyltransferase, bacterial, at 2,642,755 to 2,643,210 _2216 Echvi_2217: Echvi_2217 - hypothetical protein, at 2,643,215 to 2,644,048 _2217 Position (kb) 2642 2643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 2641.114 kb on - strand, within Echvi_2213at 2641.212 kb on + strandat 2641.213 kb on - strandat 2641.351 kb on + strandat 2642.016 kb on - strandat 2642.163 kb on - strand, within Echvi_2215at 2642.163 kb on - strand, within Echvi_2215at 2642.218 kb on + strand, within Echvi_2215at 2642.230 kb on + strand, within Echvi_2215at 2642.230 kb on + strand, within Echvi_2215at 2642.236 kb on + strand, within Echvi_2215at 2642.239 kb on + strand, within Echvi_2215at 2642.255 kb on + strand, within Echvi_2215at 2642.256 kb on - strand, within Echvi_2215at 2642.301 kb on + strand, within Echvi_2215at 2642.302 kb on - strand, within Echvi_2215at 2642.302 kb on - strand, within Echvi_2215at 2642.302 kb on - strand, within Echvi_2215at 2642.350 kb on + strand, within Echvi_2215at 2642.351 kb on - strand, within Echvi_2215at 2642.353 kb on + strand, within Echvi_2215at 2642.353 kb on + strand, within Echvi_2215at 2642.545 kb on + strand, within Echvi_2215at 2642.549 kb on + strand, within Echvi_2215at 2642.549 kb on + strand, within Echvi_2215at 2642.549 kb on + strand, within Echvi_2215at 2642.549 kb on + strand, within Echvi_2215at 2642.550 kb on - strand, within Echvi_2215at 2642.550 kb on - strand, within Echvi_2215at 2642.550 kb on - strand, within Echvi_2215at 2642.586 kb on - strand, within Echvi_2215at 2642.605 kb on + strand, within Echvi_2215at 2642.653 kb on + strand, within Echvi_2215at 2642.685 kb on + strand, within Echvi_2215at 2642.717 kb on + strandat 2642.718 kb on - strandat 2643.217 kb on - strandat 2643.430 kb on - strand, within Echvi_2217at 2643.456 kb on - strand, within Echvi_2217at 2643.606 kb on - strand, within Echvi_2217at 2643.700 kb on - strand, within Echvi_2217at 2643.742 kb on - strand, within Echvi_2217

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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2,641,114 - Echvi_2213 0.80 -0.1
2,641,212 + -0.6
2,641,213 - +0.8
2,641,351 + -0.7
2,642,016 - +0.7
2,642,163 - Echvi_2215 0.12 -3.4
2,642,163 - Echvi_2215 0.12 -2.0
2,642,218 + Echvi_2215 0.20 +0.1
2,642,230 + Echvi_2215 0.22 -0.7
2,642,230 + Echvi_2215 0.22 -2.0
2,642,236 + Echvi_2215 0.23 +0.1
2,642,239 + Echvi_2215 0.23 -0.7
2,642,255 + Echvi_2215 0.25 -0.7
2,642,256 - Echvi_2215 0.25 -2.3
2,642,301 + Echvi_2215 0.32 +0.2
2,642,302 - Echvi_2215 0.32 -1.9
2,642,302 - Echvi_2215 0.32 -1.9
2,642,302 - Echvi_2215 0.32 -3.3
2,642,350 + Echvi_2215 0.39 -3.6
2,642,351 - Echvi_2215 0.39 -2.6
2,642,353 + Echvi_2215 0.40 -0.5
2,642,353 + Echvi_2215 0.40 -2.0
2,642,545 + Echvi_2215 0.68 -0.5
2,642,549 + Echvi_2215 0.68 -2.4
2,642,549 + Echvi_2215 0.68 -0.9
2,642,549 + Echvi_2215 0.68 -0.5
2,642,549 + Echvi_2215 0.68 -2.5
2,642,550 - Echvi_2215 0.68 -3.2
2,642,550 - Echvi_2215 0.68 -1.1
2,642,550 - Echvi_2215 0.68 -0.9
2,642,586 - Echvi_2215 0.74 -0.7
2,642,605 + Echvi_2215 0.76 -0.7
2,642,653 + Echvi_2215 0.83 -2.0
2,642,685 + Echvi_2215 0.88 -4.0
2,642,717 + -1.3
2,642,718 - -1.2
2,643,217 - +0.8
2,643,430 - Echvi_2217 0.26 +3.1
2,643,456 - Echvi_2217 0.29 +4.5
2,643,606 - Echvi_2217 0.47 +4.4
2,643,700 - Echvi_2217 0.58 +1.3
2,643,742 - Echvi_2217 0.63 +6.2

Or see this region's nucleotide sequence