Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2213 and Echvi_2214 are separated by 79 nucleotides Echvi_2214 and Echvi_2215 are separated by 83 nucleotides Echvi_2215 and Echvi_2216 overlap by 13 nucleotides Echvi_2216 and Echvi_2217 are separated by 4 nucleotides
Echvi_2213: Echvi_2213 - TIGR02757 family protein, at 2,640,503 to 2,641,270
_2213
Echvi_2214: Echvi_2214 - orotate phosphoribosyltransferase, at 2,641,350 to 2,641,997
_2214
Echvi_2215: Echvi_2215 - ADP-ribose pyrophosphatase, at 2,642,081 to 2,642,767
_2215
Echvi_2216: Echvi_2216 - pantetheine-phosphate adenylyltransferase, bacterial, at 2,642,755 to 2,643,210
_2216
Echvi_2217: Echvi_2217 - hypothetical protein, at 2,643,215 to 2,644,048
_2217
Position (kb)
2642
2643 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 2641.114 kb on - strand, within Echvi_2213 at 2641.212 kb on + strand at 2641.213 kb on - strand at 2641.351 kb on + strand at 2642.016 kb on - strand at 2642.163 kb on - strand, within Echvi_2215 at 2642.163 kb on - strand, within Echvi_2215 at 2642.218 kb on + strand, within Echvi_2215 at 2642.230 kb on + strand, within Echvi_2215 at 2642.230 kb on + strand, within Echvi_2215 at 2642.236 kb on + strand, within Echvi_2215 at 2642.239 kb on + strand, within Echvi_2215 at 2642.255 kb on + strand, within Echvi_2215 at 2642.256 kb on - strand, within Echvi_2215 at 2642.301 kb on + strand, within Echvi_2215 at 2642.302 kb on - strand, within Echvi_2215 at 2642.302 kb on - strand, within Echvi_2215 at 2642.302 kb on - strand, within Echvi_2215 at 2642.350 kb on + strand, within Echvi_2215 at 2642.351 kb on - strand, within Echvi_2215 at 2642.353 kb on + strand, within Echvi_2215 at 2642.353 kb on + strand, within Echvi_2215 at 2642.545 kb on + strand, within Echvi_2215 at 2642.549 kb on + strand, within Echvi_2215 at 2642.549 kb on + strand, within Echvi_2215 at 2642.549 kb on + strand, within Echvi_2215 at 2642.549 kb on + strand, within Echvi_2215 at 2642.550 kb on - strand, within Echvi_2215 at 2642.550 kb on - strand, within Echvi_2215 at 2642.550 kb on - strand, within Echvi_2215 at 2642.586 kb on - strand, within Echvi_2215 at 2642.605 kb on + strand, within Echvi_2215 at 2642.653 kb on + strand, within Echvi_2215 at 2642.685 kb on + strand, within Echvi_2215 at 2642.717 kb on + strand at 2642.718 kb on - strand at 2643.217 kb on - strand at 2643.430 kb on - strand, within Echvi_2217 at 2643.456 kb on - strand, within Echvi_2217 at 2643.606 kb on - strand, within Echvi_2217 at 2643.700 kb on - strand, within Echvi_2217 at 2643.742 kb on - strand, within Echvi_2217
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 2,641,114 - Echvi_2213 0.80 -0.1 2,641,212 + -0.6 2,641,213 - +0.8 2,641,351 + -0.7 2,642,016 - +0.7 2,642,163 - Echvi_2215 0.12 -3.4 2,642,163 - Echvi_2215 0.12 -2.0 2,642,218 + Echvi_2215 0.20 +0.1 2,642,230 + Echvi_2215 0.22 -0.7 2,642,230 + Echvi_2215 0.22 -2.0 2,642,236 + Echvi_2215 0.23 +0.1 2,642,239 + Echvi_2215 0.23 -0.7 2,642,255 + Echvi_2215 0.25 -0.7 2,642,256 - Echvi_2215 0.25 -2.3 2,642,301 + Echvi_2215 0.32 +0.2 2,642,302 - Echvi_2215 0.32 -1.9 2,642,302 - Echvi_2215 0.32 -1.9 2,642,302 - Echvi_2215 0.32 -3.3 2,642,350 + Echvi_2215 0.39 -3.6 2,642,351 - Echvi_2215 0.39 -2.6 2,642,353 + Echvi_2215 0.40 -0.5 2,642,353 + Echvi_2215 0.40 -2.0 2,642,545 + Echvi_2215 0.68 -0.5 2,642,549 + Echvi_2215 0.68 -2.4 2,642,549 + Echvi_2215 0.68 -0.9 2,642,549 + Echvi_2215 0.68 -0.5 2,642,549 + Echvi_2215 0.68 -2.5 2,642,550 - Echvi_2215 0.68 -3.2 2,642,550 - Echvi_2215 0.68 -1.1 2,642,550 - Echvi_2215 0.68 -0.9 2,642,586 - Echvi_2215 0.74 -0.7 2,642,605 + Echvi_2215 0.76 -0.7 2,642,653 + Echvi_2215 0.83 -2.0 2,642,685 + Echvi_2215 0.88 -4.0 2,642,717 + -1.3 2,642,718 - -1.2 2,643,217 - +0.8 2,643,430 - Echvi_2217 0.26 +3.1 2,643,456 - Echvi_2217 0.29 +4.5 2,643,606 - Echvi_2217 0.47 +4.4 2,643,700 - Echvi_2217 0.58 +1.3 2,643,742 - Echvi_2217 0.63 +6.2
Or see this region's nucleotide sequence