Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2068

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2067 and Echvi_2068 are separated by 151 nucleotidesEchvi_2068 and Echvi_2069 are separated by 55 nucleotides Echvi_2067: Echvi_2067 - DNA repair protein RecN, at 2,436,967 to 2,438,619 _2067 Echvi_2068: Echvi_2068 - hypothetical protein, at 2,438,771 to 2,439,670 _2068 Echvi_2069: Echvi_2069 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic, at 2,439,726 to 2,440,925 _2069 Position (kb) 2438 2439 2440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2437.795 kb on + strand, within Echvi_2067at 2437.795 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.807 kb on + strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.808 kb on - strand, within Echvi_2067at 2437.850 kb on + strand, within Echvi_2067at 2437.907 kb on - strand, within Echvi_2067at 2438.042 kb on - strand, within Echvi_2067at 2438.070 kb on + strand, within Echvi_2067at 2438.147 kb on + strand, within Echvi_2067at 2438.148 kb on - strand, within Echvi_2067at 2438.169 kb on + strand, within Echvi_2067at 2438.188 kb on + strand, within Echvi_2067at 2438.201 kb on + strand, within Echvi_2067at 2438.282 kb on - strand, within Echvi_2067at 2438.347 kb on - strand, within Echvi_2067at 2438.350 kb on - strand, within Echvi_2067at 2438.402 kb on + strand, within Echvi_2067at 2438.403 kb on - strand, within Echvi_2067at 2438.538 kb on + strandat 2438.549 kb on - strandat 2438.549 kb on - strandat 2438.591 kb on + strandat 2438.693 kb on + strandat 2438.693 kb on + strandat 2438.693 kb on + strandat 2438.693 kb on + strandat 2438.693 kb on + strandat 2438.694 kb on - strandat 2438.694 kb on - strandat 2438.726 kb on - strandat 2438.780 kb on - strandat 2438.780 kb on - strandat 2438.823 kb on + strandat 2438.824 kb on - strandat 2438.824 kb on - strandat 2438.935 kb on + strand, within Echvi_2068at 2438.936 kb on - strand, within Echvi_2068at 2439.011 kb on + strand, within Echvi_2068at 2439.036 kb on + strand, within Echvi_2068at 2439.036 kb on + strand, within Echvi_2068at 2439.037 kb on - strand, within Echvi_2068at 2439.037 kb on - strand, within Echvi_2068at 2439.074 kb on + strand, within Echvi_2068at 2439.074 kb on + strand, within Echvi_2068at 2439.075 kb on - strand, within Echvi_2068at 2439.075 kb on - strand, within Echvi_2068at 2439.075 kb on - strand, within Echvi_2068at 2439.075 kb on - strand, within Echvi_2068at 2439.087 kb on - strand, within Echvi_2068at 2439.112 kb on + strand, within Echvi_2068at 2439.237 kb on + strand, within Echvi_2068at 2439.238 kb on - strand, within Echvi_2068at 2439.243 kb on + strand, within Echvi_2068at 2439.246 kb on + strand, within Echvi_2068at 2439.289 kb on + strand, within Echvi_2068at 2439.363 kb on + strand, within Echvi_2068at 2439.375 kb on + strand, within Echvi_2068at 2439.376 kb on - strand, within Echvi_2068at 2439.376 kb on - strand, within Echvi_2068at 2439.377 kb on + strand, within Echvi_2068at 2439.377 kb on + strand, within Echvi_2068at 2439.378 kb on - strand, within Echvi_2068at 2439.378 kb on - strand, within Echvi_2068at 2439.378 kb on - strand, within Echvi_2068at 2439.386 kb on + strand, within Echvi_2068at 2439.417 kb on + strand, within Echvi_2068at 2439.418 kb on - strand, within Echvi_2068at 2439.448 kb on + strand, within Echvi_2068at 2439.449 kb on - strand, within Echvi_2068at 2439.483 kb on + strand, within Echvi_2068at 2439.484 kb on - strand, within Echvi_2068at 2439.670 kb on + strandat 2439.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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2,437,795 + Echvi_2067 0.50 +1.1
2,437,795 + Echvi_2067 0.50 +0.3
2,437,807 + Echvi_2067 0.51 -1.3
2,437,807 + Echvi_2067 0.51 +1.1
2,437,807 + Echvi_2067 0.51 +1.5
2,437,807 + Echvi_2067 0.51 +0.2
2,437,807 + Echvi_2067 0.51 -1.0
2,437,807 + Echvi_2067 0.51 +0.3
2,437,808 - Echvi_2067 0.51 -0.6
2,437,808 - Echvi_2067 0.51 +1.4
2,437,808 - Echvi_2067 0.51 +0.8
2,437,808 - Echvi_2067 0.51 +0.8
2,437,808 - Echvi_2067 0.51 -0.7
2,437,808 - Echvi_2067 0.51 +1.2
2,437,808 - Echvi_2067 0.51 +0.0
2,437,850 + Echvi_2067 0.53 +2.2
2,437,907 - Echvi_2067 0.57 +1.8
2,438,042 - Echvi_2067 0.65 -2.3
2,438,070 + Echvi_2067 0.67 -0.3
2,438,147 + Echvi_2067 0.71 +1.5
2,438,148 - Echvi_2067 0.71 -0.3
2,438,169 + Echvi_2067 0.73 -0.3
2,438,188 + Echvi_2067 0.74 +0.2
2,438,201 + Echvi_2067 0.75 +0.0
2,438,282 - Echvi_2067 0.80 -2.2
2,438,347 - Echvi_2067 0.83 -0.8
2,438,350 - Echvi_2067 0.84 +0.7
2,438,402 + Echvi_2067 0.87 +0.4
2,438,403 - Echvi_2067 0.87 +0.6
2,438,538 + +0.0
2,438,549 - -0.5
2,438,549 - -2.0
2,438,591 + +1.5
2,438,693 + +0.3
2,438,693 + -0.8
2,438,693 + +0.7
2,438,693 + +0.8
2,438,693 + -0.4
2,438,694 - +0.8
2,438,694 - -0.1
2,438,726 - +0.3
2,438,780 - +1.6
2,438,780 - -1.1
2,438,823 + +1.0
2,438,824 - +0.8
2,438,824 - -1.8
2,438,935 + Echvi_2068 0.18 +1.0
2,438,936 - Echvi_2068 0.18 +0.5
2,439,011 + Echvi_2068 0.27 -1.1
2,439,036 + Echvi_2068 0.29 -1.1
2,439,036 + Echvi_2068 0.29 -0.3
2,439,037 - Echvi_2068 0.30 +0.6
2,439,037 - Echvi_2068 0.30 -0.6
2,439,074 + Echvi_2068 0.34 -0.2
2,439,074 + Echvi_2068 0.34 -2.6
2,439,075 - Echvi_2068 0.34 +0.0
2,439,075 - Echvi_2068 0.34 -0.3
2,439,075 - Echvi_2068 0.34 +0.5
2,439,075 - Echvi_2068 0.34 -0.3
2,439,087 - Echvi_2068 0.35 +0.7
2,439,112 + Echvi_2068 0.38 -0.0
2,439,237 + Echvi_2068 0.52 +1.0
2,439,238 - Echvi_2068 0.52 -3.1
2,439,243 + Echvi_2068 0.52 -0.8
2,439,246 + Echvi_2068 0.53 +0.5
2,439,289 + Echvi_2068 0.58 +0.0
2,439,363 + Echvi_2068 0.66 +0.0
2,439,375 + Echvi_2068 0.67 -0.2
2,439,376 - Echvi_2068 0.67 -0.5
2,439,376 - Echvi_2068 0.67 -0.5
2,439,377 + Echvi_2068 0.67 +1.0
2,439,377 + Echvi_2068 0.67 +0.3
2,439,378 - Echvi_2068 0.67 -1.7
2,439,378 - Echvi_2068 0.67 -3.0
2,439,378 - Echvi_2068 0.67 +0.6
2,439,386 + Echvi_2068 0.68 -1.7
2,439,417 + Echvi_2068 0.72 +0.5
2,439,418 - Echvi_2068 0.72 -0.6
2,439,448 + Echvi_2068 0.75 -1.1
2,439,449 - Echvi_2068 0.75 +0.6
2,439,483 + Echvi_2068 0.79 -0.0
2,439,484 - Echvi_2068 0.79 -1.4
2,439,670 + +0.4
2,439,738 + +0.2

Or see this region's nucleotide sequence