Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2067 and Echvi_2068 are separated by 151 nucleotides Echvi_2068 and Echvi_2069 are separated by 55 nucleotides
Echvi_2067: Echvi_2067 - DNA repair protein RecN, at 2,436,967 to 2,438,619
_2067
Echvi_2068: Echvi_2068 - hypothetical protein, at 2,438,771 to 2,439,670
_2068
Echvi_2069: Echvi_2069 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic, at 2,439,726 to 2,440,925
_2069
Position (kb)
2438
2439
2440 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2437.795 kb on + strand, within Echvi_2067 at 2437.795 kb on + strand, within Echvi_2067 at 2437.807 kb on + strand, within Echvi_2067 at 2437.807 kb on + strand, within Echvi_2067 at 2437.807 kb on + strand, within Echvi_2067 at 2437.807 kb on + strand, within Echvi_2067 at 2437.807 kb on + strand, within Echvi_2067 at 2437.807 kb on + strand, within Echvi_2067 at 2437.808 kb on - strand, within Echvi_2067 at 2437.808 kb on - strand, within Echvi_2067 at 2437.808 kb on - strand, within Echvi_2067 at 2437.808 kb on - strand, within Echvi_2067 at 2437.808 kb on - strand, within Echvi_2067 at 2437.808 kb on - strand, within Echvi_2067 at 2437.808 kb on - strand, within Echvi_2067 at 2437.850 kb on + strand, within Echvi_2067 at 2437.907 kb on - strand, within Echvi_2067 at 2438.042 kb on - strand, within Echvi_2067 at 2438.070 kb on + strand, within Echvi_2067 at 2438.147 kb on + strand, within Echvi_2067 at 2438.148 kb on - strand, within Echvi_2067 at 2438.169 kb on + strand, within Echvi_2067 at 2438.188 kb on + strand, within Echvi_2067 at 2438.201 kb on + strand, within Echvi_2067 at 2438.282 kb on - strand, within Echvi_2067 at 2438.347 kb on - strand, within Echvi_2067 at 2438.350 kb on - strand, within Echvi_2067 at 2438.402 kb on + strand, within Echvi_2067 at 2438.403 kb on - strand, within Echvi_2067 at 2438.538 kb on + strand at 2438.549 kb on - strand at 2438.549 kb on - strand at 2438.591 kb on + strand at 2438.693 kb on + strand at 2438.693 kb on + strand at 2438.693 kb on + strand at 2438.693 kb on + strand at 2438.693 kb on + strand at 2438.694 kb on - strand at 2438.694 kb on - strand at 2438.726 kb on - strand at 2438.780 kb on - strand at 2438.780 kb on - strand at 2438.823 kb on + strand at 2438.824 kb on - strand at 2438.824 kb on - strand at 2438.935 kb on + strand, within Echvi_2068 at 2438.936 kb on - strand, within Echvi_2068 at 2439.011 kb on + strand, within Echvi_2068 at 2439.036 kb on + strand, within Echvi_2068 at 2439.036 kb on + strand, within Echvi_2068 at 2439.037 kb on - strand, within Echvi_2068 at 2439.037 kb on - strand, within Echvi_2068 at 2439.074 kb on + strand, within Echvi_2068 at 2439.074 kb on + strand, within Echvi_2068 at 2439.075 kb on - strand, within Echvi_2068 at 2439.075 kb on - strand, within Echvi_2068 at 2439.075 kb on - strand, within Echvi_2068 at 2439.075 kb on - strand, within Echvi_2068 at 2439.087 kb on - strand, within Echvi_2068 at 2439.112 kb on + strand, within Echvi_2068 at 2439.237 kb on + strand, within Echvi_2068 at 2439.238 kb on - strand, within Echvi_2068 at 2439.243 kb on + strand, within Echvi_2068 at 2439.246 kb on + strand, within Echvi_2068 at 2439.289 kb on + strand, within Echvi_2068 at 2439.363 kb on + strand, within Echvi_2068 at 2439.375 kb on + strand, within Echvi_2068 at 2439.376 kb on - strand, within Echvi_2068 at 2439.376 kb on - strand, within Echvi_2068 at 2439.377 kb on + strand, within Echvi_2068 at 2439.377 kb on + strand, within Echvi_2068 at 2439.378 kb on - strand, within Echvi_2068 at 2439.378 kb on - strand, within Echvi_2068 at 2439.378 kb on - strand, within Echvi_2068 at 2439.386 kb on + strand, within Echvi_2068 at 2439.417 kb on + strand, within Echvi_2068 at 2439.418 kb on - strand, within Echvi_2068 at 2439.448 kb on + strand, within Echvi_2068 at 2439.449 kb on - strand, within Echvi_2068 at 2439.483 kb on + strand, within Echvi_2068 at 2439.484 kb on - strand, within Echvi_2068 at 2439.670 kb on + strand at 2439.738 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 2,437,795 + Echvi_2067 0.50 +1.1 2,437,795 + Echvi_2067 0.50 +0.3 2,437,807 + Echvi_2067 0.51 -1.3 2,437,807 + Echvi_2067 0.51 +1.1 2,437,807 + Echvi_2067 0.51 +1.5 2,437,807 + Echvi_2067 0.51 +0.2 2,437,807 + Echvi_2067 0.51 -1.0 2,437,807 + Echvi_2067 0.51 +0.3 2,437,808 - Echvi_2067 0.51 -0.6 2,437,808 - Echvi_2067 0.51 +1.4 2,437,808 - Echvi_2067 0.51 +0.8 2,437,808 - Echvi_2067 0.51 +0.8 2,437,808 - Echvi_2067 0.51 -0.7 2,437,808 - Echvi_2067 0.51 +1.2 2,437,808 - Echvi_2067 0.51 +0.0 2,437,850 + Echvi_2067 0.53 +2.2 2,437,907 - Echvi_2067 0.57 +1.8 2,438,042 - Echvi_2067 0.65 -2.3 2,438,070 + Echvi_2067 0.67 -0.3 2,438,147 + Echvi_2067 0.71 +1.5 2,438,148 - Echvi_2067 0.71 -0.3 2,438,169 + Echvi_2067 0.73 -0.3 2,438,188 + Echvi_2067 0.74 +0.2 2,438,201 + Echvi_2067 0.75 +0.0 2,438,282 - Echvi_2067 0.80 -2.2 2,438,347 - Echvi_2067 0.83 -0.8 2,438,350 - Echvi_2067 0.84 +0.7 2,438,402 + Echvi_2067 0.87 +0.4 2,438,403 - Echvi_2067 0.87 +0.6 2,438,538 + +0.0 2,438,549 - -0.5 2,438,549 - -2.0 2,438,591 + +1.5 2,438,693 + +0.3 2,438,693 + -0.8 2,438,693 + +0.7 2,438,693 + +0.8 2,438,693 + -0.4 2,438,694 - +0.8 2,438,694 - -0.1 2,438,726 - +0.3 2,438,780 - +1.6 2,438,780 - -1.1 2,438,823 + +1.0 2,438,824 - +0.8 2,438,824 - -1.8 2,438,935 + Echvi_2068 0.18 +1.0 2,438,936 - Echvi_2068 0.18 +0.5 2,439,011 + Echvi_2068 0.27 -1.1 2,439,036 + Echvi_2068 0.29 -1.1 2,439,036 + Echvi_2068 0.29 -0.3 2,439,037 - Echvi_2068 0.30 +0.6 2,439,037 - Echvi_2068 0.30 -0.6 2,439,074 + Echvi_2068 0.34 -0.2 2,439,074 + Echvi_2068 0.34 -2.6 2,439,075 - Echvi_2068 0.34 +0.0 2,439,075 - Echvi_2068 0.34 -0.3 2,439,075 - Echvi_2068 0.34 +0.5 2,439,075 - Echvi_2068 0.34 -0.3 2,439,087 - Echvi_2068 0.35 +0.7 2,439,112 + Echvi_2068 0.38 -0.0 2,439,237 + Echvi_2068 0.52 +1.0 2,439,238 - Echvi_2068 0.52 -3.1 2,439,243 + Echvi_2068 0.52 -0.8 2,439,246 + Echvi_2068 0.53 +0.5 2,439,289 + Echvi_2068 0.58 +0.0 2,439,363 + Echvi_2068 0.66 +0.0 2,439,375 + Echvi_2068 0.67 -0.2 2,439,376 - Echvi_2068 0.67 -0.5 2,439,376 - Echvi_2068 0.67 -0.5 2,439,377 + Echvi_2068 0.67 +1.0 2,439,377 + Echvi_2068 0.67 +0.3 2,439,378 - Echvi_2068 0.67 -1.7 2,439,378 - Echvi_2068 0.67 -3.0 2,439,378 - Echvi_2068 0.67 +0.6 2,439,386 + Echvi_2068 0.68 -1.7 2,439,417 + Echvi_2068 0.72 +0.5 2,439,418 - Echvi_2068 0.72 -0.6 2,439,448 + Echvi_2068 0.75 -1.1 2,439,449 - Echvi_2068 0.75 +0.6 2,439,483 + Echvi_2068 0.79 -0.0 2,439,484 - Echvi_2068 0.79 -1.4 2,439,670 + +0.4 2,439,738 + +0.2
Or see this region's nucleotide sequence