Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1774

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1773 and Echvi_1774 are separated by 32 nucleotidesEchvi_1774 and Echvi_1775 are separated by 782 nucleotides Echvi_1773: Echvi_1773 - ribonucleoside-diphosphate reductase, alpha subunit, at 2,084,009 to 2,086,408 _1773 Echvi_1774: Echvi_1774 - Ribonucleotide reductase, beta subunit, at 2,086,441 to 2,087,424 _1774 Echvi_1775: Echvi_1775 - ribosomal protein L21, at 2,088,207 to 2,088,518 _1775 Position (kb) 2086 2087 2088Strain fitness (log2 ratio) -3 -2 -1 0 1at 2087.467 kb on - strandat 2087.559 kb on - strandat 2087.647 kb on - strandat 2087.649 kb on - strandat 2087.755 kb on + strandat 2087.955 kb on + strandat 2087.955 kb on + strandat 2087.955 kb on + strandat 2087.955 kb on + strandat 2087.955 kb on + strandat 2087.956 kb on - strandat 2087.956 kb on - strandat 2087.956 kb on - strandat 2087.968 kb on - strandat 2088.002 kb on - strandat 2088.002 kb on - strandat 2088.032 kb on + strandat 2088.033 kb on - strandat 2088.033 kb on - strandat 2088.033 kb on - strandat 2088.034 kb on + strandat 2088.035 kb on - strandat 2088.047 kb on + strandat 2088.048 kb on - strandat 2088.093 kb on + strandat 2088.093 kb on + strandat 2088.093 kb on + strandat 2088.099 kb on + strandat 2088.099 kb on + strandat 2088.100 kb on - strandat 2088.100 kb on - strandat 2088.100 kb on - strandat 2088.101 kb on + strandat 2088.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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2,087,467 - -0.5
2,087,559 - +0.4
2,087,647 - -0.7
2,087,649 - +0.8
2,087,755 + -0.7
2,087,955 + +0.4
2,087,955 + +1.2
2,087,955 + +1.2
2,087,955 + -0.2
2,087,955 + +0.1
2,087,956 - -0.9
2,087,956 - +1.5
2,087,956 - +0.5
2,087,968 - -0.6
2,088,002 - -2.8
2,088,002 - +0.8
2,088,032 + +1.1
2,088,033 - +0.9
2,088,033 - +1.1
2,088,033 - -0.0
2,088,034 + +0.7
2,088,035 - +1.3
2,088,047 + -1.8
2,088,048 - +0.7
2,088,093 + +0.1
2,088,093 + -0.7
2,088,093 + +0.4
2,088,099 + +1.3
2,088,099 + +1.3
2,088,100 - +1.3
2,088,100 - -3.4
2,088,100 - -0.1
2,088,101 + -0.9
2,088,102 - -0.7

Or see this region's nucleotide sequence