Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1466 and Echvi_1467 overlap by 8 nucleotides Echvi_1467 and Echvi_1468 are separated by 7 nucleotides Echvi_1468 and Echvi_1469 are separated by 482 nucleotides
Echvi_1466: Echvi_1466 - hypothetical protein, at 1,680,538 to 1,681,059
_1466
Echvi_1467: Echvi_1467 - rod shape-determining protein MreC, at 1,681,052 to 1,681,885
_1467
Echvi_1468: Echvi_1468 - cell shape determining protein, MreB/Mrl family, at 1,681,893 to 1,682,921
_1468
Echvi_1469: Echvi_1469 - AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful), at 1,683,404 to 1,684,930
_1469
Position (kb)
1681
1682
1683 Strain fitness (log2 ratio)
-2
-1
0
1 at 1681.119 kb on - strand at 1682.986 kb on - strand at 1683.073 kb on + strand at 1683.074 kb on - strand at 1683.115 kb on + strand at 1683.115 kb on + strand at 1683.116 kb on - strand at 1683.305 kb on + strand at 1683.306 kb on - strand at 1683.310 kb on + strand at 1683.310 kb on + strand at 1683.311 kb on - strand at 1683.311 kb on - strand at 1683.387 kb on + strand at 1683.393 kb on - strand at 1683.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 1,681,119 - -0.1 1,682,986 - -0.7 1,683,073 + -0.6 1,683,074 - -1.4 1,683,115 + -2.0 1,683,115 + -0.8 1,683,116 - +0.8 1,683,305 + +0.1 1,683,306 - -0.3 1,683,310 + +1.1 1,683,310 + +1.2 1,683,311 - +0.4 1,683,311 - +0.4 1,683,387 + +0.9 1,683,393 - -2.3 1,683,400 + -1.8
Or see this region's nucleotide sequence