Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0929 and Echvi_0930 are separated by 188 nucleotides Echvi_0930 and Echvi_0931 are separated by 180 nucleotides
Echvi_0929: Echvi_0929 - Beta-fructosidases (levanase/invertase), at 1,068,082 to 1,069,026
_0929
Echvi_0930: Echvi_0930 - Endopolygalacturonase, at 1,069,215 to 1,070,789
_0930
Echvi_0931: Echvi_0931 - hypothetical protein, at 1,070,970 to 1,072,397
_0931
Position (kb)
1069
1070
1071 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1068.243 kb on - strand, within Echvi_0929 at 1068.243 kb on - strand, within Echvi_0929 at 1068.255 kb on - strand, within Echvi_0929 at 1068.255 kb on - strand, within Echvi_0929 at 1068.268 kb on - strand, within Echvi_0929 at 1068.288 kb on + strand, within Echvi_0929 at 1068.326 kb on + strand, within Echvi_0929 at 1068.393 kb on + strand, within Echvi_0929 at 1068.393 kb on + strand, within Echvi_0929 at 1068.393 kb on + strand, within Echvi_0929 at 1068.393 kb on + strand, within Echvi_0929 at 1068.393 kb on + strand, within Echvi_0929 at 1068.394 kb on - strand, within Echvi_0929 at 1068.404 kb on - strand, within Echvi_0929 at 1068.490 kb on - strand, within Echvi_0929 at 1068.518 kb on + strand, within Echvi_0929 at 1068.518 kb on + strand, within Echvi_0929 at 1068.518 kb on + strand, within Echvi_0929 at 1068.521 kb on + strand, within Echvi_0929 at 1068.521 kb on + strand, within Echvi_0929 at 1068.620 kb on + strand, within Echvi_0929 at 1068.620 kb on + strand, within Echvi_0929 at 1068.650 kb on - strand, within Echvi_0929 at 1068.669 kb on + strand, within Echvi_0929 at 1068.670 kb on - strand, within Echvi_0929 at 1068.679 kb on - strand, within Echvi_0929 at 1068.761 kb on - strand, within Echvi_0929 at 1068.884 kb on + strand, within Echvi_0929 at 1068.894 kb on - strand, within Echvi_0929 at 1068.894 kb on - strand, within Echvi_0929 at 1068.894 kb on - strand, within Echvi_0929 at 1068.936 kb on - strand at 1068.939 kb on - strand at 1068.986 kb on - strand at 1069.017 kb on + strand at 1069.030 kb on + strand at 1069.030 kb on + strand at 1069.076 kb on + strand at 1069.076 kb on + strand at 1069.076 kb on + strand at 1069.204 kb on + strand at 1069.204 kb on + strand at 1069.204 kb on + strand at 1069.204 kb on + strand at 1069.204 kb on + strand at 1069.205 kb on - strand at 1069.212 kb on + strand at 1069.212 kb on + strand at 1069.212 kb on + strand at 1069.213 kb on - strand at 1069.216 kb on + strand at 1069.427 kb on + strand, within Echvi_0930 at 1069.427 kb on + strand, within Echvi_0930 at 1069.428 kb on - strand, within Echvi_0930 at 1069.465 kb on - strand, within Echvi_0930 at 1069.465 kb on - strand, within Echvi_0930 at 1069.545 kb on - strand, within Echvi_0930 at 1069.738 kb on - strand, within Echvi_0930 at 1069.820 kb on + strand, within Echvi_0930 at 1069.821 kb on - strand, within Echvi_0930 at 1069.821 kb on - strand, within Echvi_0930 at 1069.821 kb on - strand, within Echvi_0930 at 1069.842 kb on + strand, within Echvi_0930 at 1069.953 kb on - strand, within Echvi_0930 at 1070.003 kb on + strand, within Echvi_0930 at 1070.004 kb on - strand, within Echvi_0930 at 1070.024 kb on + strand, within Echvi_0930 at 1070.049 kb on - strand, within Echvi_0930 at 1070.079 kb on - strand, within Echvi_0930 at 1070.167 kb on - strand, within Echvi_0930 at 1070.167 kb on - strand, within Echvi_0930 at 1070.167 kb on - strand, within Echvi_0930 at 1070.186 kb on + strand, within Echvi_0930 at 1070.308 kb on + strand, within Echvi_0930 at 1070.308 kb on + strand, within Echvi_0930 at 1070.308 kb on + strand at 1070.415 kb on - strand, within Echvi_0930 at 1070.428 kb on + strand, within Echvi_0930 at 1070.428 kb on + strand, within Echvi_0930 at 1070.429 kb on - strand, within Echvi_0930 at 1070.434 kb on + strand, within Echvi_0930 at 1070.434 kb on + strand, within Echvi_0930 at 1070.434 kb on + strand, within Echvi_0930 at 1070.434 kb on + strand, within Echvi_0930 at 1070.435 kb on - strand, within Echvi_0930 at 1070.453 kb on + strand, within Echvi_0930 at 1070.498 kb on - strand, within Echvi_0930 at 1070.555 kb on + strand, within Echvi_0930 at 1070.555 kb on + strand, within Echvi_0930 at 1070.588 kb on - strand, within Echvi_0930 at 1070.702 kb on + strand at 1070.760 kb on + strand at 1070.760 kb on + strand at 1070.760 kb on + strand at 1070.760 kb on + strand at 1070.761 kb on - strand at 1070.761 kb on - strand at 1070.790 kb on - strand at 1070.794 kb on + strand at 1070.794 kb on + strand at 1070.802 kb on + strand at 1070.806 kb on + strand at 1070.807 kb on - strand at 1070.807 kb on - strand at 1070.807 kb on - strand at 1070.807 kb on - strand at 1070.830 kb on + strand at 1070.831 kb on - strand at 1070.929 kb on + strand at 1070.929 kb on + strand at 1070.929 kb on + strand at 1070.929 kb on + strand at 1070.929 kb on + strand at 1070.929 kb on + strand at 1070.930 kb on - strand at 1070.930 kb on - strand at 1070.930 kb on - strand at 1070.930 kb on - strand at 1070.937 kb on + strand at 1070.959 kb on - strand at 1070.977 kb on + strand at 1071.126 kb on + strand, within Echvi_0931 at 1071.126 kb on + strand, within Echvi_0931 at 1071.127 kb on - strand, within Echvi_0931 at 1071.127 kb on - strand, within Echvi_0931 at 1071.146 kb on + strand, within Echvi_0931 at 1071.160 kb on + strand, within Echvi_0931 at 1071.161 kb on - strand, within Echvi_0931 at 1071.166 kb on + strand, within Echvi_0931 at 1071.166 kb on + strand, within Echvi_0931 at 1071.167 kb on - strand, within Echvi_0931 at 1071.167 kb on - strand, within Echvi_0931 at 1071.167 kb on - strand, within Echvi_0931 at 1071.167 kb on - strand, within Echvi_0931 at 1071.336 kb on + strand, within Echvi_0931 at 1071.353 kb on - strand, within Echvi_0931 at 1071.360 kb on + strand, within Echvi_0931 at 1071.401 kb on + strand, within Echvi_0931 at 1071.401 kb on + strand, within Echvi_0931 at 1071.402 kb on - strand, within Echvi_0931 at 1071.402 kb on - strand, within Echvi_0931 at 1071.402 kb on - strand, within Echvi_0931 at 1071.410 kb on - strand, within Echvi_0931 at 1071.410 kb on - strand, within Echvi_0931 at 1071.410 kb on - strand, within Echvi_0931 at 1071.410 kb on - strand, within Echvi_0931 at 1071.413 kb on + strand, within Echvi_0931 at 1071.446 kb on - strand, within Echvi_0931 at 1071.451 kb on + strand, within Echvi_0931 at 1071.451 kb on + strand, within Echvi_0931 at 1071.451 kb on + strand, within Echvi_0931 at 1071.452 kb on - strand, within Echvi_0931 at 1071.512 kb on + strand, within Echvi_0931 at 1071.513 kb on - strand, within Echvi_0931 at 1071.513 kb on - strand, within Echvi_0931 at 1071.520 kb on + strand, within Echvi_0931 at 1071.520 kb on + strand, within Echvi_0931 at 1071.520 kb on + strand, within Echvi_0931 at 1071.521 kb on - strand, within Echvi_0931 at 1071.521 kb on - strand, within Echvi_0931 at 1071.580 kb on + strand, within Echvi_0931 at 1071.580 kb on + strand, within Echvi_0931 at 1071.581 kb on - strand, within Echvi_0931 at 1071.581 kb on - strand, within Echvi_0931 at 1071.581 kb on - strand, within Echvi_0931 at 1071.602 kb on - strand, within Echvi_0931 at 1071.653 kb on + strand, within Echvi_0931 at 1071.722 kb on + strand, within Echvi_0931 at 1071.722 kb on + strand, within Echvi_0931 at 1071.722 kb on + strand, within Echvi_0931 at 1071.723 kb on - strand, within Echvi_0931
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 1,068,243 - Echvi_0929 0.17 -0.7 1,068,243 - Echvi_0929 0.17 -0.5 1,068,255 - Echvi_0929 0.18 -1.8 1,068,255 - Echvi_0929 0.18 -1.0 1,068,268 - Echvi_0929 0.20 +0.4 1,068,288 + Echvi_0929 0.22 -1.0 1,068,326 + Echvi_0929 0.26 -1.3 1,068,393 + Echvi_0929 0.33 +1.0 1,068,393 + Echvi_0929 0.33 -0.3 1,068,393 + Echvi_0929 0.33 -3.7 1,068,393 + Echvi_0929 0.33 +0.9 1,068,393 + Echvi_0929 0.33 -1.7 1,068,394 - Echvi_0929 0.33 -0.7 1,068,404 - Echvi_0929 0.34 -1.2 1,068,490 - Echvi_0929 0.43 -2.7 1,068,518 + Echvi_0929 0.46 +0.5 1,068,518 + Echvi_0929 0.46 -1.2 1,068,518 + Echvi_0929 0.46 +0.7 1,068,521 + Echvi_0929 0.46 -0.1 1,068,521 + Echvi_0929 0.46 -1.0 1,068,620 + Echvi_0929 0.57 -0.6 1,068,620 + Echvi_0929 0.57 +1.0 1,068,650 - Echvi_0929 0.60 +0.6 1,068,669 + Echvi_0929 0.62 -1.7 1,068,670 - Echvi_0929 0.62 +0.1 1,068,679 - Echvi_0929 0.63 -1.6 1,068,761 - Echvi_0929 0.72 -1.3 1,068,884 + Echvi_0929 0.85 -1.2 1,068,894 - Echvi_0929 0.86 +2.0 1,068,894 - Echvi_0929 0.86 -2.1 1,068,894 - Echvi_0929 0.86 +0.1 1,068,936 - -0.3 1,068,939 - +0.4 1,068,986 - -3.1 1,069,017 + +0.2 1,069,030 + +1.6 1,069,030 + -0.0 1,069,076 + -0.2 1,069,076 + -1.0 1,069,076 + +2.0 1,069,204 + -2.3 1,069,204 + -1.3 1,069,204 + +0.6 1,069,204 + +0.6 1,069,204 + +0.0 1,069,205 - +0.4 1,069,212 + -0.0 1,069,212 + +0.1 1,069,212 + -0.9 1,069,213 - -3.3 1,069,216 + +1.9 1,069,427 + Echvi_0930 0.13 -0.8 1,069,427 + Echvi_0930 0.13 -0.5 1,069,428 - Echvi_0930 0.14 -1.7 1,069,465 - Echvi_0930 0.16 -0.1 1,069,465 - Echvi_0930 0.16 -0.9 1,069,545 - Echvi_0930 0.21 -0.7 1,069,738 - Echvi_0930 0.33 -1.2 1,069,820 + Echvi_0930 0.38 +0.9 1,069,821 - Echvi_0930 0.38 -1.7 1,069,821 - Echvi_0930 0.38 +1.3 1,069,821 - Echvi_0930 0.38 +0.1 1,069,842 + Echvi_0930 0.40 -0.6 1,069,953 - Echvi_0930 0.47 -0.1 1,070,003 + Echvi_0930 0.50 -0.6 1,070,004 - Echvi_0930 0.50 -2.1 1,070,024 + Echvi_0930 0.51 +0.3 1,070,049 - Echvi_0930 0.53 +2.6 1,070,079 - Echvi_0930 0.55 -1.5 1,070,167 - Echvi_0930 0.60 -1.1 1,070,167 - Echvi_0930 0.60 +1.1 1,070,167 - Echvi_0930 0.60 -0.8 1,070,186 + Echvi_0930 0.62 -0.6 1,070,308 + Echvi_0930 0.69 -0.5 1,070,308 + Echvi_0930 0.69 -1.7 1,070,308 + +2.0 1,070,415 - Echvi_0930 0.76 -1.0 1,070,428 + Echvi_0930 0.77 -1.4 1,070,428 + Echvi_0930 0.77 +0.0 1,070,429 - Echvi_0930 0.77 +1.2 1,070,434 + Echvi_0930 0.77 -3.0 1,070,434 + Echvi_0930 0.77 -0.3 1,070,434 + Echvi_0930 0.77 +0.3 1,070,434 + Echvi_0930 0.77 -0.6 1,070,435 - Echvi_0930 0.77 -0.9 1,070,453 + Echvi_0930 0.79 +0.4 1,070,498 - Echvi_0930 0.81 -1.5 1,070,555 + Echvi_0930 0.85 +1.1 1,070,555 + Echvi_0930 0.85 +0.3 1,070,588 - Echvi_0930 0.87 -0.2 1,070,702 + -0.1 1,070,760 + +1.9 1,070,760 + -0.7 1,070,760 + -4.1 1,070,760 + -0.1 1,070,761 - -0.9 1,070,761 - +0.8 1,070,790 - -0.6 1,070,794 + -0.2 1,070,794 + +0.3 1,070,802 + -1.5 1,070,806 + +1.0 1,070,807 - -1.0 1,070,807 - -0.1 1,070,807 - +0.4 1,070,807 - -0.5 1,070,830 + +0.7 1,070,831 - -2.7 1,070,929 + -2.3 1,070,929 + +0.5 1,070,929 + -0.0 1,070,929 + +1.2 1,070,929 + -1.6 1,070,929 + +0.3 1,070,930 - -2.3 1,070,930 - -1.2 1,070,930 - -1.0 1,070,930 - -0.8 1,070,937 + +0.6 1,070,959 - -1.2 1,070,977 + +1.0 1,071,126 + Echvi_0931 0.11 -0.2 1,071,126 + Echvi_0931 0.11 +0.8 1,071,127 - Echvi_0931 0.11 -2.2 1,071,127 - Echvi_0931 0.11 -1.4 1,071,146 + Echvi_0931 0.12 -1.7 1,071,160 + Echvi_0931 0.13 -1.3 1,071,161 - Echvi_0931 0.13 +0.4 1,071,166 + Echvi_0931 0.14 +1.7 1,071,166 + Echvi_0931 0.14 -0.7 1,071,167 - Echvi_0931 0.14 +0.3 1,071,167 - Echvi_0931 0.14 -1.3 1,071,167 - Echvi_0931 0.14 -2.0 1,071,167 - Echvi_0931 0.14 -2.7 1,071,336 + Echvi_0931 0.26 -0.0 1,071,353 - Echvi_0931 0.27 -2.4 1,071,360 + Echvi_0931 0.27 -0.7 1,071,401 + Echvi_0931 0.30 -1.5 1,071,401 + Echvi_0931 0.30 +1.5 1,071,402 - Echvi_0931 0.30 -0.3 1,071,402 - Echvi_0931 0.30 -1.9 1,071,402 - Echvi_0931 0.30 -1.5 1,071,410 - Echvi_0931 0.31 -1.1 1,071,410 - Echvi_0931 0.31 +2.6 1,071,410 - Echvi_0931 0.31 -1.7 1,071,410 - Echvi_0931 0.31 -1.5 1,071,413 + Echvi_0931 0.31 -0.5 1,071,446 - Echvi_0931 0.33 -0.0 1,071,451 + Echvi_0931 0.34 +0.2 1,071,451 + Echvi_0931 0.34 +0.5 1,071,451 + Echvi_0931 0.34 -1.1 1,071,452 - Echvi_0931 0.34 -0.0 1,071,512 + Echvi_0931 0.38 +0.1 1,071,513 - Echvi_0931 0.38 -1.2 1,071,513 - Echvi_0931 0.38 -1.3 1,071,520 + Echvi_0931 0.39 +0.2 1,071,520 + Echvi_0931 0.39 -0.2 1,071,520 + Echvi_0931 0.39 -0.9 1,071,521 - Echvi_0931 0.39 +0.1 1,071,521 - Echvi_0931 0.39 +2.0 1,071,580 + Echvi_0931 0.43 +0.0 1,071,580 + Echvi_0931 0.43 -0.1 1,071,581 - Echvi_0931 0.43 -0.0 1,071,581 - Echvi_0931 0.43 -2.5 1,071,581 - Echvi_0931 0.43 -0.8 1,071,602 - Echvi_0931 0.44 -0.4 1,071,653 + Echvi_0931 0.48 -1.2 1,071,722 + Echvi_0931 0.53 +0.1 1,071,722 + Echvi_0931 0.53 +0.8 1,071,722 + Echvi_0931 0.53 +0.2 1,071,723 - Echvi_0931 0.53 -0.9
Or see this region's nucleotide sequence