Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0930

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0929 and Echvi_0930 are separated by 188 nucleotidesEchvi_0930 and Echvi_0931 are separated by 180 nucleotides Echvi_0929: Echvi_0929 - Beta-fructosidases (levanase/invertase), at 1,068,082 to 1,069,026 _0929 Echvi_0930: Echvi_0930 - Endopolygalacturonase, at 1,069,215 to 1,070,789 _0930 Echvi_0931: Echvi_0931 - hypothetical protein, at 1,070,970 to 1,072,397 _0931 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1068.243 kb on - strand, within Echvi_0929at 1068.243 kb on - strand, within Echvi_0929at 1068.255 kb on - strand, within Echvi_0929at 1068.255 kb on - strand, within Echvi_0929at 1068.268 kb on - strand, within Echvi_0929at 1068.288 kb on + strand, within Echvi_0929at 1068.326 kb on + strand, within Echvi_0929at 1068.393 kb on + strand, within Echvi_0929at 1068.393 kb on + strand, within Echvi_0929at 1068.393 kb on + strand, within Echvi_0929at 1068.393 kb on + strand, within Echvi_0929at 1068.393 kb on + strand, within Echvi_0929at 1068.394 kb on - strand, within Echvi_0929at 1068.404 kb on - strand, within Echvi_0929at 1068.490 kb on - strand, within Echvi_0929at 1068.518 kb on + strand, within Echvi_0929at 1068.518 kb on + strand, within Echvi_0929at 1068.518 kb on + strand, within Echvi_0929at 1068.521 kb on + strand, within Echvi_0929at 1068.521 kb on + strand, within Echvi_0929at 1068.620 kb on + strand, within Echvi_0929at 1068.620 kb on + strand, within Echvi_0929at 1068.650 kb on - strand, within Echvi_0929at 1068.669 kb on + strand, within Echvi_0929at 1068.670 kb on - strand, within Echvi_0929at 1068.679 kb on - strand, within Echvi_0929at 1068.761 kb on - strand, within Echvi_0929at 1068.884 kb on + strand, within Echvi_0929at 1068.894 kb on - strand, within Echvi_0929at 1068.894 kb on - strand, within Echvi_0929at 1068.894 kb on - strand, within Echvi_0929at 1068.936 kb on - strandat 1068.939 kb on - strandat 1068.986 kb on - strandat 1069.017 kb on + strandat 1069.030 kb on + strandat 1069.030 kb on + strandat 1069.076 kb on + strandat 1069.076 kb on + strandat 1069.076 kb on + strandat 1069.204 kb on + strandat 1069.204 kb on + strandat 1069.204 kb on + strandat 1069.204 kb on + strandat 1069.204 kb on + strandat 1069.205 kb on - strandat 1069.212 kb on + strandat 1069.212 kb on + strandat 1069.212 kb on + strandat 1069.213 kb on - strandat 1069.216 kb on + strandat 1069.427 kb on + strand, within Echvi_0930at 1069.427 kb on + strand, within Echvi_0930at 1069.428 kb on - strand, within Echvi_0930at 1069.465 kb on - strand, within Echvi_0930at 1069.465 kb on - strand, within Echvi_0930at 1069.545 kb on - strand, within Echvi_0930at 1069.738 kb on - strand, within Echvi_0930at 1069.820 kb on + strand, within Echvi_0930at 1069.821 kb on - strand, within Echvi_0930at 1069.821 kb on - strand, within Echvi_0930at 1069.821 kb on - strand, within Echvi_0930at 1069.842 kb on + strand, within Echvi_0930at 1069.953 kb on - strand, within Echvi_0930at 1070.003 kb on + strand, within Echvi_0930at 1070.004 kb on - strand, within Echvi_0930at 1070.024 kb on + strand, within Echvi_0930at 1070.049 kb on - strand, within Echvi_0930at 1070.079 kb on - strand, within Echvi_0930at 1070.167 kb on - strand, within Echvi_0930at 1070.167 kb on - strand, within Echvi_0930at 1070.167 kb on - strand, within Echvi_0930at 1070.186 kb on + strand, within Echvi_0930at 1070.308 kb on + strand, within Echvi_0930at 1070.308 kb on + strand, within Echvi_0930at 1070.308 kb on + strandat 1070.415 kb on - strand, within Echvi_0930at 1070.428 kb on + strand, within Echvi_0930at 1070.428 kb on + strand, within Echvi_0930at 1070.429 kb on - strand, within Echvi_0930at 1070.434 kb on + strand, within Echvi_0930at 1070.434 kb on + strand, within Echvi_0930at 1070.434 kb on + strand, within Echvi_0930at 1070.434 kb on + strand, within Echvi_0930at 1070.435 kb on - strand, within Echvi_0930at 1070.453 kb on + strand, within Echvi_0930at 1070.498 kb on - strand, within Echvi_0930at 1070.555 kb on + strand, within Echvi_0930at 1070.555 kb on + strand, within Echvi_0930at 1070.588 kb on - strand, within Echvi_0930at 1070.702 kb on + strandat 1070.760 kb on + strandat 1070.760 kb on + strandat 1070.760 kb on + strandat 1070.760 kb on + strandat 1070.761 kb on - strandat 1070.761 kb on - strandat 1070.790 kb on - strandat 1070.794 kb on + strandat 1070.794 kb on + strandat 1070.802 kb on + strandat 1070.806 kb on + strandat 1070.807 kb on - strandat 1070.807 kb on - strandat 1070.807 kb on - strandat 1070.807 kb on - strandat 1070.830 kb on + strandat 1070.831 kb on - strandat 1070.929 kb on + strandat 1070.929 kb on + strandat 1070.929 kb on + strandat 1070.929 kb on + strandat 1070.929 kb on + strandat 1070.929 kb on + strandat 1070.930 kb on - strandat 1070.930 kb on - strandat 1070.930 kb on - strandat 1070.930 kb on - strandat 1070.937 kb on + strandat 1070.959 kb on - strandat 1070.977 kb on + strandat 1071.126 kb on + strand, within Echvi_0931at 1071.126 kb on + strand, within Echvi_0931at 1071.127 kb on - strand, within Echvi_0931at 1071.127 kb on - strand, within Echvi_0931at 1071.146 kb on + strand, within Echvi_0931at 1071.160 kb on + strand, within Echvi_0931at 1071.161 kb on - strand, within Echvi_0931at 1071.166 kb on + strand, within Echvi_0931at 1071.166 kb on + strand, within Echvi_0931at 1071.167 kb on - strand, within Echvi_0931at 1071.167 kb on - strand, within Echvi_0931at 1071.167 kb on - strand, within Echvi_0931at 1071.167 kb on - strand, within Echvi_0931at 1071.336 kb on + strand, within Echvi_0931at 1071.353 kb on - strand, within Echvi_0931at 1071.360 kb on + strand, within Echvi_0931at 1071.401 kb on + strand, within Echvi_0931at 1071.401 kb on + strand, within Echvi_0931at 1071.402 kb on - strand, within Echvi_0931at 1071.402 kb on - strand, within Echvi_0931at 1071.402 kb on - strand, within Echvi_0931at 1071.410 kb on - strand, within Echvi_0931at 1071.410 kb on - strand, within Echvi_0931at 1071.410 kb on - strand, within Echvi_0931at 1071.410 kb on - strand, within Echvi_0931at 1071.413 kb on + strand, within Echvi_0931at 1071.446 kb on - strand, within Echvi_0931at 1071.451 kb on + strand, within Echvi_0931at 1071.451 kb on + strand, within Echvi_0931at 1071.451 kb on + strand, within Echvi_0931at 1071.452 kb on - strand, within Echvi_0931at 1071.512 kb on + strand, within Echvi_0931at 1071.513 kb on - strand, within Echvi_0931at 1071.513 kb on - strand, within Echvi_0931at 1071.520 kb on + strand, within Echvi_0931at 1071.520 kb on + strand, within Echvi_0931at 1071.520 kb on + strand, within Echvi_0931at 1071.521 kb on - strand, within Echvi_0931at 1071.521 kb on - strand, within Echvi_0931at 1071.580 kb on + strand, within Echvi_0931at 1071.580 kb on + strand, within Echvi_0931at 1071.581 kb on - strand, within Echvi_0931at 1071.581 kb on - strand, within Echvi_0931at 1071.581 kb on - strand, within Echvi_0931at 1071.602 kb on - strand, within Echvi_0931at 1071.653 kb on + strand, within Echvi_0931at 1071.722 kb on + strand, within Echvi_0931at 1071.722 kb on + strand, within Echvi_0931at 1071.722 kb on + strand, within Echvi_0931at 1071.723 kb on - strand, within Echvi_0931

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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1,068,243 - Echvi_0929 0.17 -0.7
1,068,243 - Echvi_0929 0.17 -0.5
1,068,255 - Echvi_0929 0.18 -1.8
1,068,255 - Echvi_0929 0.18 -1.0
1,068,268 - Echvi_0929 0.20 +0.4
1,068,288 + Echvi_0929 0.22 -1.0
1,068,326 + Echvi_0929 0.26 -1.3
1,068,393 + Echvi_0929 0.33 +1.0
1,068,393 + Echvi_0929 0.33 -0.3
1,068,393 + Echvi_0929 0.33 -3.7
1,068,393 + Echvi_0929 0.33 +0.9
1,068,393 + Echvi_0929 0.33 -1.7
1,068,394 - Echvi_0929 0.33 -0.7
1,068,404 - Echvi_0929 0.34 -1.2
1,068,490 - Echvi_0929 0.43 -2.7
1,068,518 + Echvi_0929 0.46 +0.5
1,068,518 + Echvi_0929 0.46 -1.2
1,068,518 + Echvi_0929 0.46 +0.7
1,068,521 + Echvi_0929 0.46 -0.1
1,068,521 + Echvi_0929 0.46 -1.0
1,068,620 + Echvi_0929 0.57 -0.6
1,068,620 + Echvi_0929 0.57 +1.0
1,068,650 - Echvi_0929 0.60 +0.6
1,068,669 + Echvi_0929 0.62 -1.7
1,068,670 - Echvi_0929 0.62 +0.1
1,068,679 - Echvi_0929 0.63 -1.6
1,068,761 - Echvi_0929 0.72 -1.3
1,068,884 + Echvi_0929 0.85 -1.2
1,068,894 - Echvi_0929 0.86 +2.0
1,068,894 - Echvi_0929 0.86 -2.1
1,068,894 - Echvi_0929 0.86 +0.1
1,068,936 - -0.3
1,068,939 - +0.4
1,068,986 - -3.1
1,069,017 + +0.2
1,069,030 + +1.6
1,069,030 + -0.0
1,069,076 + -0.2
1,069,076 + -1.0
1,069,076 + +2.0
1,069,204 + -2.3
1,069,204 + -1.3
1,069,204 + +0.6
1,069,204 + +0.6
1,069,204 + +0.0
1,069,205 - +0.4
1,069,212 + -0.0
1,069,212 + +0.1
1,069,212 + -0.9
1,069,213 - -3.3
1,069,216 + +1.9
1,069,427 + Echvi_0930 0.13 -0.8
1,069,427 + Echvi_0930 0.13 -0.5
1,069,428 - Echvi_0930 0.14 -1.7
1,069,465 - Echvi_0930 0.16 -0.1
1,069,465 - Echvi_0930 0.16 -0.9
1,069,545 - Echvi_0930 0.21 -0.7
1,069,738 - Echvi_0930 0.33 -1.2
1,069,820 + Echvi_0930 0.38 +0.9
1,069,821 - Echvi_0930 0.38 -1.7
1,069,821 - Echvi_0930 0.38 +1.3
1,069,821 - Echvi_0930 0.38 +0.1
1,069,842 + Echvi_0930 0.40 -0.6
1,069,953 - Echvi_0930 0.47 -0.1
1,070,003 + Echvi_0930 0.50 -0.6
1,070,004 - Echvi_0930 0.50 -2.1
1,070,024 + Echvi_0930 0.51 +0.3
1,070,049 - Echvi_0930 0.53 +2.6
1,070,079 - Echvi_0930 0.55 -1.5
1,070,167 - Echvi_0930 0.60 -1.1
1,070,167 - Echvi_0930 0.60 +1.1
1,070,167 - Echvi_0930 0.60 -0.8
1,070,186 + Echvi_0930 0.62 -0.6
1,070,308 + Echvi_0930 0.69 -0.5
1,070,308 + Echvi_0930 0.69 -1.7
1,070,308 + +2.0
1,070,415 - Echvi_0930 0.76 -1.0
1,070,428 + Echvi_0930 0.77 -1.4
1,070,428 + Echvi_0930 0.77 +0.0
1,070,429 - Echvi_0930 0.77 +1.2
1,070,434 + Echvi_0930 0.77 -3.0
1,070,434 + Echvi_0930 0.77 -0.3
1,070,434 + Echvi_0930 0.77 +0.3
1,070,434 + Echvi_0930 0.77 -0.6
1,070,435 - Echvi_0930 0.77 -0.9
1,070,453 + Echvi_0930 0.79 +0.4
1,070,498 - Echvi_0930 0.81 -1.5
1,070,555 + Echvi_0930 0.85 +1.1
1,070,555 + Echvi_0930 0.85 +0.3
1,070,588 - Echvi_0930 0.87 -0.2
1,070,702 + -0.1
1,070,760 + +1.9
1,070,760 + -0.7
1,070,760 + -4.1
1,070,760 + -0.1
1,070,761 - -0.9
1,070,761 - +0.8
1,070,790 - -0.6
1,070,794 + -0.2
1,070,794 + +0.3
1,070,802 + -1.5
1,070,806 + +1.0
1,070,807 - -1.0
1,070,807 - -0.1
1,070,807 - +0.4
1,070,807 - -0.5
1,070,830 + +0.7
1,070,831 - -2.7
1,070,929 + -2.3
1,070,929 + +0.5
1,070,929 + -0.0
1,070,929 + +1.2
1,070,929 + -1.6
1,070,929 + +0.3
1,070,930 - -2.3
1,070,930 - -1.2
1,070,930 - -1.0
1,070,930 - -0.8
1,070,937 + +0.6
1,070,959 - -1.2
1,070,977 + +1.0
1,071,126 + Echvi_0931 0.11 -0.2
1,071,126 + Echvi_0931 0.11 +0.8
1,071,127 - Echvi_0931 0.11 -2.2
1,071,127 - Echvi_0931 0.11 -1.4
1,071,146 + Echvi_0931 0.12 -1.7
1,071,160 + Echvi_0931 0.13 -1.3
1,071,161 - Echvi_0931 0.13 +0.4
1,071,166 + Echvi_0931 0.14 +1.7
1,071,166 + Echvi_0931 0.14 -0.7
1,071,167 - Echvi_0931 0.14 +0.3
1,071,167 - Echvi_0931 0.14 -1.3
1,071,167 - Echvi_0931 0.14 -2.0
1,071,167 - Echvi_0931 0.14 -2.7
1,071,336 + Echvi_0931 0.26 -0.0
1,071,353 - Echvi_0931 0.27 -2.4
1,071,360 + Echvi_0931 0.27 -0.7
1,071,401 + Echvi_0931 0.30 -1.5
1,071,401 + Echvi_0931 0.30 +1.5
1,071,402 - Echvi_0931 0.30 -0.3
1,071,402 - Echvi_0931 0.30 -1.9
1,071,402 - Echvi_0931 0.30 -1.5
1,071,410 - Echvi_0931 0.31 -1.1
1,071,410 - Echvi_0931 0.31 +2.6
1,071,410 - Echvi_0931 0.31 -1.7
1,071,410 - Echvi_0931 0.31 -1.5
1,071,413 + Echvi_0931 0.31 -0.5
1,071,446 - Echvi_0931 0.33 -0.0
1,071,451 + Echvi_0931 0.34 +0.2
1,071,451 + Echvi_0931 0.34 +0.5
1,071,451 + Echvi_0931 0.34 -1.1
1,071,452 - Echvi_0931 0.34 -0.0
1,071,512 + Echvi_0931 0.38 +0.1
1,071,513 - Echvi_0931 0.38 -1.2
1,071,513 - Echvi_0931 0.38 -1.3
1,071,520 + Echvi_0931 0.39 +0.2
1,071,520 + Echvi_0931 0.39 -0.2
1,071,520 + Echvi_0931 0.39 -0.9
1,071,521 - Echvi_0931 0.39 +0.1
1,071,521 - Echvi_0931 0.39 +2.0
1,071,580 + Echvi_0931 0.43 +0.0
1,071,580 + Echvi_0931 0.43 -0.1
1,071,581 - Echvi_0931 0.43 -0.0
1,071,581 - Echvi_0931 0.43 -2.5
1,071,581 - Echvi_0931 0.43 -0.8
1,071,602 - Echvi_0931 0.44 -0.4
1,071,653 + Echvi_0931 0.48 -1.2
1,071,722 + Echvi_0931 0.53 +0.1
1,071,722 + Echvi_0931 0.53 +0.8
1,071,722 + Echvi_0931 0.53 +0.2
1,071,723 - Echvi_0931 0.53 -0.9

Or see this region's nucleotide sequence