Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0863

Experiment: L-tyrosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0862 and Echvi_0863 are separated by 184 nucleotides Echvi_0862: Echvi_0862 - Glutamate dehydrogenase/leucine dehydrogenase, at 982,637 to 983,863 _0862 Echvi_0863: Echvi_0863 - Na+/H+ antiporter NhaD and related arsenite permeases, at 984,048 to 985,574 _0863 Position (kb) 984 985 986Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 983.052 kb on + strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.052 kb on + strand, within Echvi_0862at 983.053 kb on - strand, within Echvi_0862at 983.128 kb on - strand, within Echvi_0862at 983.144 kb on + strand, within Echvi_0862at 983.145 kb on - strand, within Echvi_0862at 983.145 kb on - strand, within Echvi_0862at 983.169 kb on - strand, within Echvi_0862at 983.170 kb on + strand, within Echvi_0862at 983.170 kb on + strand, within Echvi_0862at 983.182 kb on + strand, within Echvi_0862at 983.214 kb on + strand, within Echvi_0862at 983.215 kb on - strand, within Echvi_0862at 983.225 kb on + strand, within Echvi_0862at 983.226 kb on - strand, within Echvi_0862at 983.226 kb on - strand, within Echvi_0862at 983.247 kb on + strand, within Echvi_0862at 983.286 kb on + strand, within Echvi_0862at 983.286 kb on + strand, within Echvi_0862at 983.286 kb on + strand, within Echvi_0862at 983.361 kb on + strand, within Echvi_0862at 983.361 kb on + strand, within Echvi_0862at 983.361 kb on + strand, within Echvi_0862at 983.362 kb on - strand, within Echvi_0862at 983.385 kb on + strand, within Echvi_0862at 983.385 kb on + strand, within Echvi_0862at 983.385 kb on + strand, within Echvi_0862at 983.386 kb on - strand, within Echvi_0862at 983.386 kb on - strand, within Echvi_0862at 983.446 kb on - strand, within Echvi_0862at 983.485 kb on - strand, within Echvi_0862at 983.497 kb on - strand, within Echvi_0862at 983.593 kb on - strand, within Echvi_0862at 983.730 kb on + strand, within Echvi_0862at 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.799 kb on + strandat 983.800 kb on - strandat 983.800 kb on - strandat 983.800 kb on - strandat 983.800 kb on - strandat 983.800 kb on - strandat 983.800 kb on - strandat 983.800 kb on - strandat 983.859 kb on + strandat 983.859 kb on + strandat 983.861 kb on + strandat 983.861 kb on + strandat 983.862 kb on - strandat 983.862 kb on - strandat 983.862 kb on - strandat 983.875 kb on + strandat 983.876 kb on - strandat 983.922 kb on + strandat 983.958 kb on + strandat 983.963 kb on + strandat 983.973 kb on + strandat 983.973 kb on + strandat 983.985 kb on + strandat 984.020 kb on + strandat 984.030 kb on + strandat 984.030 kb on + strandat 985.719 kb on + strandat 985.789 kb on + strandat 985.805 kb on + strandat 985.856 kb on - strandat 985.864 kb on + strandat 985.864 kb on + strandat 985.864 kb on + strandat 985.865 kb on - strandat 985.906 kb on - strandat 985.908 kb on + strandat 985.908 kb on + strandat 985.910 kb on + strandat 985.911 kb on - strandat 985.914 kb on + strandat 985.914 kb on + strandat 985.914 kb on + strandat 985.914 kb on + strandat 985.924 kb on + strandat 985.932 kb on + strandat 985.974 kb on + strandat 985.981 kb on + strandat 985.981 kb on + strandat 986.093 kb on - strandat 986.217 kb on - strandat 986.217 kb on - strandat 986.285 kb on + strandat 986.334 kb on + strandat 986.367 kb on + strandat 986.367 kb on + strandat 986.444 kb on + strandat 986.445 kb on - strandat 986.445 kb on - strandat 986.487 kb on - strandat 986.487 kb on - strandat 986.487 kb on - strandat 986.492 kb on - strandat 986.500 kb on + strandat 986.546 kb on + strandat 986.546 kb on + strandat 986.546 kb on + strandat 986.549 kb on + strandat 986.551 kb on + strandat 986.551 kb on + strandat 986.551 kb on + strandat 986.551 kb on + strandat 986.551 kb on + strandat 986.553 kb on + strandat 986.553 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
remove
983,052 + Echvi_0862 0.34 -4.8
983,052 + Echvi_0862 0.34 -4.0
983,052 + Echvi_0862 0.34 -2.2
983,052 + Echvi_0862 0.34 -5.0
983,052 + Echvi_0862 0.34 -1.0
983,053 - Echvi_0862 0.34 -0.8
983,128 - Echvi_0862 0.40 +0.1
983,144 + Echvi_0862 0.41 -2.9
983,145 - Echvi_0862 0.41 +0.6
983,145 - Echvi_0862 0.41 +0.4
983,169 - Echvi_0862 0.43 -1.2
983,170 + Echvi_0862 0.43 -2.9
983,170 + Echvi_0862 0.43 -2.4
983,182 + Echvi_0862 0.44 -0.8
983,214 + Echvi_0862 0.47 -2.3
983,215 - Echvi_0862 0.47 +0.6
983,225 + Echvi_0862 0.48 -2.8
983,226 - Echvi_0862 0.48 -2.3
983,226 - Echvi_0862 0.48 +0.7
983,247 + Echvi_0862 0.50 -4.7
983,286 + Echvi_0862 0.53 -1.0
983,286 + Echvi_0862 0.53 -3.1
983,286 + Echvi_0862 0.53 -3.4
983,361 + Echvi_0862 0.59 -2.1
983,361 + Echvi_0862 0.59 -3.1
983,361 + Echvi_0862 0.59 -3.4
983,362 - Echvi_0862 0.59 +0.7
983,385 + Echvi_0862 0.61 -2.4
983,385 + Echvi_0862 0.61 -2.4
983,385 + Echvi_0862 0.61 -4.2
983,386 - Echvi_0862 0.61 -0.7
983,386 - Echvi_0862 0.61 +0.5
983,446 - Echvi_0862 0.66 +0.6
983,485 - Echvi_0862 0.69 +1.7
983,497 - Echvi_0862 0.70 +1.7
983,593 - Echvi_0862 0.78 -0.0
983,730 + Echvi_0862 0.89 -1.8
983,799 + -3.8
983,799 + -3.7
983,799 + -3.2
983,799 + -2.3
983,799 + -2.9
983,799 + -4.5
983,799 + -2.5
983,799 + -2.4
983,799 + -4.4
983,799 + -2.3
983,799 + -2.5
983,800 - -0.7
983,800 - +0.7
983,800 - -1.1
983,800 - -2.2
983,800 - -0.3
983,800 - -0.7
983,800 - -0.3
983,859 + -2.6
983,859 + -3.5
983,861 + -3.5
983,861 + -1.0
983,862 - -2.1
983,862 - +2.0
983,862 - +1.7
983,875 + -3.4
983,876 - -2.7
983,922 + -2.4
983,958 + -4.3
983,963 + -2.6
983,973 + -3.8
983,973 + -2.5
983,985 + -2.0
984,020 + -4.3
984,030 + -4.6
984,030 + -4.2
985,719 + +1.0
985,789 + +0.5
985,805 + -2.9
985,856 - +0.1
985,864 + -0.3
985,864 + -2.9
985,864 + -0.2
985,865 - -0.0
985,906 - -1.7
985,908 + -0.4
985,908 + +0.4
985,910 + +0.9
985,911 - +1.9
985,914 + +1.6
985,914 + +0.1
985,914 + -2.5
985,914 + +0.5
985,924 + -3.1
985,932 + +0.7
985,974 + +0.9
985,981 + +1.7
985,981 + -2.5
986,093 - +2.0
986,217 - -0.1
986,217 - -1.6
986,285 + -0.3
986,334 + -0.1
986,367 + -2.0
986,367 + +0.9
986,444 + -0.8
986,445 - +0.4
986,445 - -0.8
986,487 - -0.4
986,487 - -1.0
986,487 - -2.5
986,492 - -0.0
986,500 + +1.6
986,546 + +1.9
986,546 + +0.9
986,546 + -0.9
986,549 + +0.8
986,551 + -0.7
986,551 + +2.0
986,551 + +1.3
986,551 + -0.5
986,551 + +1.1
986,553 + +0.0
986,553 + -0.9

Or see this region's nucleotide sequence