Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0853

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0852 and Echvi_0853 are separated by 89 nucleotidesEchvi_0853 and Echvi_0854 overlap by 1 nucleotidesEchvi_0854 and Echvi_0855 are separated by 1 nucleotidesEchvi_0855 and Echvi_0856 are separated by 116 nucleotides Echvi_0852: Echvi_0852 - Parvulin-like peptidyl-prolyl isomerase, at 973,260 to 975,368 _0852 Echvi_0853: Echvi_0853 - Hemolysins and related proteins containing CBS domains, at 975,458 to 976,741 _0853 Echvi_0854: Echvi_0854 - hypothetical protein, at 976,741 to 976,953 _0854 Echvi_0855: Echvi_0855 - Protein of unknown function (DUF1239)., at 976,955 to 977,497 _0855 Echvi_0856: Echvi_0856 - hypothetical protein, at 977,614 to 978,918 _0856 Position (kb) 975 976 977Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 974.477 kb on + strand, within Echvi_0852at 974.477 kb on + strand, within Echvi_0852at 974.478 kb on - strand, within Echvi_0852at 974.490 kb on + strand, within Echvi_0852at 974.514 kb on + strand, within Echvi_0852at 974.514 kb on + strand, within Echvi_0852at 974.572 kb on - strand, within Echvi_0852at 974.600 kb on - strand, within Echvi_0852at 974.617 kb on + strand, within Echvi_0852at 974.618 kb on - strand, within Echvi_0852at 974.634 kb on - strand, within Echvi_0852at 974.634 kb on - strand, within Echvi_0852at 974.634 kb on - strand, within Echvi_0852at 974.671 kb on + strand, within Echvi_0852at 974.671 kb on + strand, within Echvi_0852at 974.672 kb on - strand, within Echvi_0852at 974.672 kb on - strand, within Echvi_0852at 974.722 kb on + strand, within Echvi_0852at 974.722 kb on + strand, within Echvi_0852at 974.722 kb on + strand, within Echvi_0852at 974.723 kb on - strand, within Echvi_0852at 974.723 kb on - strand, within Echvi_0852at 974.725 kb on + strand, within Echvi_0852at 974.725 kb on + strand, within Echvi_0852at 974.725 kb on + strand, within Echvi_0852at 974.725 kb on + strand, within Echvi_0852at 974.725 kb on + strand, within Echvi_0852at 974.725 kb on + strand, within Echvi_0852at 974.725 kb on + strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.726 kb on - strand, within Echvi_0852at 974.731 kb on - strand, within Echvi_0852at 974.745 kb on + strand, within Echvi_0852at 974.745 kb on + strand, within Echvi_0852at 974.771 kb on + strand, within Echvi_0852at 974.773 kb on + strand, within Echvi_0852at 974.803 kb on + strand, within Echvi_0852at 974.804 kb on - strand, within Echvi_0852at 974.830 kb on + strand, within Echvi_0852at 974.969 kb on + strand, within Echvi_0852at 974.970 kb on - strand, within Echvi_0852at 974.970 kb on - strand, within Echvi_0852at 974.970 kb on - strand, within Echvi_0852at 974.970 kb on - strand, within Echvi_0852at 974.970 kb on - strand, within Echvi_0852at 974.992 kb on - strand, within Echvi_0852at 975.014 kb on + strand, within Echvi_0852at 975.014 kb on + strand, within Echvi_0852at 975.014 kb on + strand, within Echvi_0852at 975.014 kb on + strand, within Echvi_0852at 975.014 kb on + strand, within Echvi_0852at 975.015 kb on - strand, within Echvi_0852at 975.015 kb on - strand, within Echvi_0852at 975.015 kb on - strand, within Echvi_0852at 975.015 kb on - strand, within Echvi_0852at 975.015 kb on - strand, within Echvi_0852at 975.018 kb on + strand, within Echvi_0852at 975.018 kb on + strand, within Echvi_0852at 975.019 kb on - strand, within Echvi_0852at 975.019 kb on - strand, within Echvi_0852at 975.059 kb on - strand, within Echvi_0852at 975.059 kb on - strand, within Echvi_0852at 975.084 kb on + strand, within Echvi_0852at 975.118 kb on + strand, within Echvi_0852at 975.118 kb on + strand, within Echvi_0852at 975.118 kb on + strand, within Echvi_0852at 975.118 kb on + strand, within Echvi_0852at 975.118 kb on + strand, within Echvi_0852at 975.118 kb on + strand, within Echvi_0852at 975.119 kb on - strandat 975.119 kb on - strand, within Echvi_0852at 975.119 kb on - strand, within Echvi_0852at 975.119 kb on - strand, within Echvi_0852at 975.119 kb on - strand, within Echvi_0852at 975.160 kb on + strandat 975.161 kb on - strandat 975.194 kb on - strandat 975.194 kb on - strandat 975.194 kb on - strandat 975.231 kb on + strandat 975.232 kb on - strandat 975.348 kb on - strandat 975.360 kb on + strandat 975.374 kb on + strandat 975.375 kb on - strandat 975.439 kb on - strandat 975.459 kb on + strandat 975.460 kb on - strandat 975.467 kb on + strandat 975.485 kb on - strandat 975.524 kb on - strandat 975.534 kb on + strandat 975.534 kb on + strandat 975.534 kb on + strandat 975.599 kb on - strand, within Echvi_0853at 975.604 kb on - strand, within Echvi_0853at 975.630 kb on + strand, within Echvi_0853at 975.631 kb on - strand, within Echvi_0853at 975.675 kb on + strand, within Echvi_0853at 975.720 kb on + strand, within Echvi_0853at 975.720 kb on + strand, within Echvi_0853at 975.721 kb on - strand, within Echvi_0853at 975.942 kb on + strand, within Echvi_0853at 975.962 kb on - strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.973 kb on - strand, within Echvi_0853at 976.030 kb on + strand, within Echvi_0853at 976.031 kb on - strand, within Echvi_0853at 976.031 kb on - strand, within Echvi_0853at 976.031 kb on - strand, within Echvi_0853at 976.088 kb on + strand, within Echvi_0853at 976.097 kb on - strand, within Echvi_0853at 976.103 kb on + strand, within Echvi_0853at 976.126 kb on + strand, within Echvi_0853at 976.127 kb on - strand, within Echvi_0853at 976.132 kb on + strand, within Echvi_0853at 976.132 kb on + strand, within Echvi_0853at 976.221 kb on + strand, within Echvi_0853at 976.222 kb on - strand, within Echvi_0853at 976.222 kb on - strand, within Echvi_0853at 976.297 kb on - strand, within Echvi_0853at 976.299 kb on + strand, within Echvi_0853at 976.299 kb on + strand, within Echvi_0853at 976.310 kb on - strand, within Echvi_0853at 976.310 kb on - strand, within Echvi_0853at 976.342 kb on + strand, within Echvi_0853at 976.343 kb on - strand, within Echvi_0853at 976.343 kb on - strand, within Echvi_0853at 976.354 kb on + strand, within Echvi_0853at 976.355 kb on - strand, within Echvi_0853at 976.360 kb on + strand, within Echvi_0853at 976.372 kb on + strand, within Echvi_0853at 976.397 kb on - strand, within Echvi_0853at 976.397 kb on - strand, within Echvi_0853at 976.402 kb on + strand, within Echvi_0853at 976.409 kb on + strand, within Echvi_0853at 976.506 kb on + strand, within Echvi_0853at 976.519 kb on + strand, within Echvi_0853at 976.524 kb on + strand, within Echvi_0853at 976.524 kb on + strand, within Echvi_0853at 976.524 kb on + strand, within Echvi_0853at 976.529 kb on + strand, within Echvi_0853at 976.530 kb on - strand, within Echvi_0853at 976.601 kb on + strand, within Echvi_0853at 976.602 kb on - strand, within Echvi_0853at 976.641 kb on - strandat 976.641 kb on - strandat 976.641 kb on - strandat 976.641 kb on - strandat 976.651 kb on + strandat 976.651 kb on + strandat 976.651 kb on + strandat 976.704 kb on - strandat 976.719 kb on + strandat 976.719 kb on + strandat 976.720 kb on - strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.729 kb on - strandat 976.742 kb on + strandat 976.743 kb on - strandat 976.743 kb on - strandat 976.814 kb on + strand, within Echvi_0854at 976.814 kb on + strand, within Echvi_0854at 976.849 kb on - strand, within Echvi_0854at 976.869 kb on + strand, within Echvi_0854at 976.869 kb on + strand, within Echvi_0854at 976.900 kb on + strand, within Echvi_0854at 976.901 kb on - strand, within Echvi_0854at 976.901 kb on - strand, within Echvi_0854at 976.931 kb on - strand, within Echvi_0854at 976.931 kb on - strand, within Echvi_0854at 976.945 kb on + strandat 976.957 kb on - strandat 976.957 kb on - strandat 976.974 kb on - strandat 976.974 kb on - strandat 977.526 kb on - strandat 977.536 kb on - strandat 977.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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974,477 + Echvi_0852 0.58 -0.9
974,477 + Echvi_0852 0.58 +0.2
974,478 - Echvi_0852 0.58 -0.3
974,490 + Echvi_0852 0.58 -2.4
974,514 + Echvi_0852 0.59 +0.0
974,514 + Echvi_0852 0.59 +0.1
974,572 - Echvi_0852 0.62 +0.7
974,600 - Echvi_0852 0.64 -2.2
974,617 + Echvi_0852 0.64 +2.8
974,618 - Echvi_0852 0.64 -0.3
974,634 - Echvi_0852 0.65 +1.5
974,634 - Echvi_0852 0.65 -0.9
974,634 - Echvi_0852 0.65 +0.0
974,671 + Echvi_0852 0.67 -0.0
974,671 + Echvi_0852 0.67 -0.9
974,672 - Echvi_0852 0.67 +0.6
974,672 - Echvi_0852 0.67 -0.1
974,722 + Echvi_0852 0.69 -0.6
974,722 + Echvi_0852 0.69 +1.8
974,722 + Echvi_0852 0.69 +0.5
974,723 - Echvi_0852 0.69 -0.3
974,723 - Echvi_0852 0.69 +0.7
974,725 + Echvi_0852 0.69 +0.8
974,725 + Echvi_0852 0.69 -0.8
974,725 + Echvi_0852 0.69 +1.6
974,725 + Echvi_0852 0.69 -1.4
974,725 + Echvi_0852 0.69 +0.3
974,725 + Echvi_0852 0.69 +0.7
974,725 + Echvi_0852 0.69 +1.1
974,726 - Echvi_0852 0.70 -0.2
974,726 - Echvi_0852 0.70 +1.0
974,726 - Echvi_0852 0.70 +0.8
974,726 - Echvi_0852 0.70 -2.1
974,726 - Echvi_0852 0.70 +0.8
974,726 - Echvi_0852 0.70 -0.1
974,726 - Echvi_0852 0.70 +0.3
974,726 - Echvi_0852 0.70 -0.8
974,726 - Echvi_0852 0.70 +0.3
974,731 - Echvi_0852 0.70 -0.9
974,745 + Echvi_0852 0.70 +0.2
974,745 + Echvi_0852 0.70 -0.5
974,771 + Echvi_0852 0.72 +0.5
974,773 + Echvi_0852 0.72 +2.8
974,803 + Echvi_0852 0.73 -0.6
974,804 - Echvi_0852 0.73 -1.8
974,830 + Echvi_0852 0.74 -0.3
974,969 + Echvi_0852 0.81 +0.3
974,970 - Echvi_0852 0.81 +0.3
974,970 - Echvi_0852 0.81 -0.7
974,970 - Echvi_0852 0.81 -1.0
974,970 - Echvi_0852 0.81 -1.9
974,970 - Echvi_0852 0.81 +0.4
974,992 - Echvi_0852 0.82 +0.3
975,014 + Echvi_0852 0.83 +1.5
975,014 + Echvi_0852 0.83 +1.4
975,014 + Echvi_0852 0.83 -0.6
975,014 + Echvi_0852 0.83 +0.3
975,014 + Echvi_0852 0.83 +2.3
975,015 - Echvi_0852 0.83 -1.7
975,015 - Echvi_0852 0.83 +0.7
975,015 - Echvi_0852 0.83 -0.5
975,015 - Echvi_0852 0.83 -1.1
975,015 - Echvi_0852 0.83 +0.7
975,018 + Echvi_0852 0.83 +0.0
975,018 + Echvi_0852 0.83 +0.7
975,019 - Echvi_0852 0.83 -0.0
975,019 - Echvi_0852 0.83 -0.4
975,059 - Echvi_0852 0.85 -0.5
975,059 - Echvi_0852 0.85 +0.9
975,084 + Echvi_0852 0.86 +0.7
975,118 + Echvi_0852 0.88 +0.8
975,118 + Echvi_0852 0.88 -0.5
975,118 + Echvi_0852 0.88 -0.1
975,118 + Echvi_0852 0.88 -1.0
975,118 + Echvi_0852 0.88 +0.5
975,118 + Echvi_0852 0.88 -1.0
975,119 - +1.0
975,119 - Echvi_0852 0.88 +2.0
975,119 - Echvi_0852 0.88 +0.5
975,119 - Echvi_0852 0.88 +0.6
975,119 - Echvi_0852 0.88 -0.6
975,160 + -0.1
975,161 - -2.1
975,194 - -1.0
975,194 - +0.1
975,194 - -0.1
975,231 + -0.8
975,232 - -0.4
975,348 - -1.3
975,360 + -0.9
975,374 + -0.9
975,375 - -0.2
975,439 - -2.1
975,459 + +0.6
975,460 - +1.1
975,467 + -0.6
975,485 - -3.5
975,524 - -0.9
975,534 + -1.8
975,534 + -1.9
975,534 + +1.5
975,599 - Echvi_0853 0.11 -0.8
975,604 - Echvi_0853 0.11 -1.6
975,630 + Echvi_0853 0.13 -3.3
975,631 - Echvi_0853 0.13 -2.8
975,675 + Echvi_0853 0.17 -2.6
975,720 + Echvi_0853 0.20 -1.5
975,720 + Echvi_0853 0.20 -0.6
975,721 - Echvi_0853 0.20 -0.8
975,942 + Echvi_0853 0.38 -2.7
975,962 - Echvi_0853 0.39 -2.4
975,972 + Echvi_0853 0.40 -1.6
975,972 + Echvi_0853 0.40 -0.3
975,972 + Echvi_0853 0.40 -2.3
975,972 + Echvi_0853 0.40 +0.5
975,972 + Echvi_0853 0.40 -2.3
975,972 + Echvi_0853 0.40 -1.0
975,973 - Echvi_0853 0.40 -0.4
976,030 + Echvi_0853 0.45 -3.0
976,031 - Echvi_0853 0.45 -0.8
976,031 - Echvi_0853 0.45 -2.4
976,031 - Echvi_0853 0.45 +2.0
976,088 + Echvi_0853 0.49 +0.0
976,097 - Echvi_0853 0.50 -1.8
976,103 + Echvi_0853 0.50 -2.4
976,126 + Echvi_0853 0.52 -0.6
976,127 - Echvi_0853 0.52 -0.8
976,132 + Echvi_0853 0.52 -2.0
976,132 + Echvi_0853 0.52 -1.7
976,221 + Echvi_0853 0.59 -2.2
976,222 - Echvi_0853 0.60 -1.2
976,222 - Echvi_0853 0.60 -1.4
976,297 - Echvi_0853 0.65 -1.7
976,299 + Echvi_0853 0.65 -1.8
976,299 + Echvi_0853 0.65 +0.2
976,310 - Echvi_0853 0.66 -2.0
976,310 - Echvi_0853 0.66 -1.4
976,342 + Echvi_0853 0.69 -4.3
976,343 - Echvi_0853 0.69 -2.8
976,343 - Echvi_0853 0.69 -0.1
976,354 + Echvi_0853 0.70 -1.6
976,355 - Echvi_0853 0.70 -2.8
976,360 + Echvi_0853 0.70 +0.4
976,372 + Echvi_0853 0.71 -0.4
976,397 - Echvi_0853 0.73 -1.3
976,397 - Echvi_0853 0.73 -2.9
976,402 + Echvi_0853 0.74 -0.3
976,409 + Echvi_0853 0.74 -3.1
976,506 + Echvi_0853 0.82 -1.0
976,519 + Echvi_0853 0.83 -0.0
976,524 + Echvi_0853 0.83 -2.1
976,524 + Echvi_0853 0.83 +0.4
976,524 + Echvi_0853 0.83 -1.3
976,529 + Echvi_0853 0.83 -1.8
976,530 - Echvi_0853 0.83 -2.8
976,601 + Echvi_0853 0.89 -2.0
976,602 - Echvi_0853 0.89 -1.7
976,641 - -2.1
976,641 - -2.2
976,641 - -2.8
976,641 - -0.3
976,651 + -2.9
976,651 + -0.9
976,651 + -1.0
976,704 - -2.8
976,719 + -1.1
976,719 + -2.0
976,720 - -0.8
976,728 + -0.3
976,728 + -1.4
976,728 + -0.6
976,728 + +1.8
976,728 + -0.2
976,728 + -0.7
976,728 + -2.3
976,729 - -2.1
976,742 + -1.3
976,743 - -0.4
976,743 - +2.0
976,814 + Echvi_0854 0.34 -1.1
976,814 + Echvi_0854 0.34 -1.7
976,849 - Echvi_0854 0.51 +0.3
976,869 + Echvi_0854 0.60 -1.0
976,869 + Echvi_0854 0.60 -0.1
976,900 + Echvi_0854 0.75 -0.1
976,901 - Echvi_0854 0.75 +0.3
976,901 - Echvi_0854 0.75 -2.1
976,931 - Echvi_0854 0.89 -0.2
976,931 - Echvi_0854 0.89 +1.7
976,945 + -0.1
976,957 - -1.0
976,957 - +2.0
976,974 - +1.0
976,974 - -0.6
977,526 - -0.4
977,536 - +0.4
977,536 - -0.2

Or see this region's nucleotide sequence