Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0812 and Echvi_0813 are separated by 68 nucleotides Echvi_0813 and Echvi_0814 are separated by 75 nucleotides Echvi_0814 and Echvi_0815 are separated by 20 nucleotides
Echvi_0812: Echvi_0812 - SprT-like family., at 931,717 to 932,358
_0812
Echvi_0813: Echvi_0813 - hypothetical protein, at 932,427 to 932,648
_0813
Echvi_0814: Echvi_0814 - ribosome-associated GTPase EngA, at 932,724 to 934,037
_0814
Echvi_0815: Echvi_0815 - GTP-binding protein Era, at 934,058 to 934,948
_0815
Position (kb) 932
933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 931.764 kb on + strand at 931.765 kb on - strand at 931.769 kb on + strand at 931.883 kb on + strand, within Echvi_0812 at 931.883 kb on + strand, within Echvi_0812 at 931.883 kb on + strand, within Echvi_0812 at 931.895 kb on - strand, within Echvi_0812 at 931.895 kb on - strand, within Echvi_0812 at 931.916 kb on + strand, within Echvi_0812 at 931.916 kb on + strand, within Echvi_0812 at 931.917 kb on - strand, within Echvi_0812 at 931.917 kb on - strand, within Echvi_0812 at 932.008 kb on - strand, within Echvi_0812 at 932.036 kb on + strand, within Echvi_0812 at 932.036 kb on + strand, within Echvi_0812 at 932.037 kb on - strand, within Echvi_0812 at 932.085 kb on + strand, within Echvi_0812 at 932.135 kb on + strand, within Echvi_0812 at 932.135 kb on + strand, within Echvi_0812 at 932.135 kb on + strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.136 kb on - strand, within Echvi_0812 at 932.173 kb on + strand, within Echvi_0812 at 932.174 kb on - strand, within Echvi_0812 at 932.344 kb on + strand at 932.345 kb on - strand at 932.345 kb on - strand at 932.345 kb on - strand at 932.364 kb on - strand at 932.364 kb on - strand at 932.371 kb on + strand at 932.428 kb on + strand at 932.478 kb on + strand, within Echvi_0813 at 932.478 kb on + strand, within Echvi_0813 at 932.484 kb on - strand, within Echvi_0813 at 932.607 kb on + strand, within Echvi_0813 at 932.608 kb on - strand, within Echvi_0813 at 932.629 kb on - strand at 934.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 931,764 + -1.6 931,765 - +0.6 931,769 + -0.2 931,883 + Echvi_0812 0.26 -3.4 931,883 + Echvi_0812 0.26 +0.1 931,883 + Echvi_0812 0.26 -0.5 931,895 - Echvi_0812 0.28 -2.6 931,895 - Echvi_0812 0.28 -1.0 931,916 + Echvi_0812 0.31 -0.1 931,916 + Echvi_0812 0.31 +0.6 931,917 - Echvi_0812 0.31 +0.9 931,917 - Echvi_0812 0.31 +2.1 932,008 - Echvi_0812 0.45 -1.4 932,036 + Echvi_0812 0.50 -0.2 932,036 + Echvi_0812 0.50 +0.5 932,037 - Echvi_0812 0.50 -0.6 932,085 + Echvi_0812 0.57 +2.2 932,135 + Echvi_0812 0.65 +0.7 932,135 + Echvi_0812 0.65 +0.1 932,135 + Echvi_0812 0.65 +0.6 932,136 - Echvi_0812 0.65 +0.8 932,136 - Echvi_0812 0.65 +0.4 932,136 - Echvi_0812 0.65 +0.2 932,136 - Echvi_0812 0.65 -0.5 932,136 - Echvi_0812 0.65 +0.4 932,173 + Echvi_0812 0.71 +0.5 932,174 - Echvi_0812 0.71 -0.7 932,344 + +0.6 932,345 - +1.7 932,345 - -1.5 932,345 - +0.2 932,364 - -0.2 932,364 - -1.4 932,371 + +1.9 932,428 + -0.1 932,478 + Echvi_0813 0.23 +0.4 932,478 + Echvi_0813 0.23 +0.8 932,484 - Echvi_0813 0.26 -3.0 932,607 + Echvi_0813 0.81 +1.6 932,608 - Echvi_0813 0.82 -3.0 932,629 - -2.0 934,060 - +0.9
Or see this region's nucleotide sequence