Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0647

Experiment: L-tyrosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0646 and Echvi_0647 are separated by 181 nucleotidesEchvi_0647 and Echvi_0648 are separated by 476 nucleotides Echvi_0646: Echvi_0646 - Cyanate permease, at 729,314 to 730,492 _0646 Echvi_0647: Echvi_0647 - ferrochelatase, at 730,674 to 731,717 _0647 Echvi_0648: Echvi_0648 - hypothetical protein, at 732,194 to 732,700 _0648 Position (kb) 730 731 732Strain fitness (log2 ratio) -2 -1 0 1 2 3at 729.700 kb on + strand, within Echvi_0646at 729.700 kb on + strand, within Echvi_0646at 729.743 kb on + strand, within Echvi_0646at 729.773 kb on - strand, within Echvi_0646at 729.820 kb on + strand, within Echvi_0646at 729.821 kb on - strand, within Echvi_0646at 729.821 kb on - strand, within Echvi_0646at 729.827 kb on + strand, within Echvi_0646at 729.827 kb on + strand, within Echvi_0646at 729.827 kb on + strand, within Echvi_0646at 729.828 kb on - strand, within Echvi_0646at 729.916 kb on + strand, within Echvi_0646at 730.027 kb on + strand, within Echvi_0646at 730.040 kb on + strand, within Echvi_0646at 730.041 kb on - strand, within Echvi_0646at 730.071 kb on + strand, within Echvi_0646at 730.071 kb on + strand, within Echvi_0646at 730.071 kb on + strand, within Echvi_0646at 730.072 kb on - strand, within Echvi_0646at 730.084 kb on + strand, within Echvi_0646at 730.085 kb on - strand, within Echvi_0646at 730.092 kb on - strand, within Echvi_0646at 730.097 kb on - strand, within Echvi_0646at 730.133 kb on + strand, within Echvi_0646at 730.134 kb on - strand, within Echvi_0646at 730.179 kb on + strand, within Echvi_0646at 730.180 kb on - strand, within Echvi_0646at 730.210 kb on + strand, within Echvi_0646at 730.210 kb on + strand, within Echvi_0646at 730.210 kb on + strand, within Echvi_0646at 730.210 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.212 kb on + strand, within Echvi_0646at 730.213 kb on - strand, within Echvi_0646at 730.213 kb on - strand, within Echvi_0646at 730.214 kb on + strand, within Echvi_0646at 730.256 kb on + strand, within Echvi_0646at 730.256 kb on + strand, within Echvi_0646at 730.256 kb on + strand, within Echvi_0646at 730.257 kb on - strand, within Echvi_0646at 730.394 kb on + strandat 730.395 kb on - strandat 730.463 kb on + strandat 730.464 kb on - strandat 730.522 kb on - strandat 730.525 kb on + strandat 730.525 kb on + strandat 730.525 kb on + strandat 730.525 kb on + strandat 730.525 kb on + strandat 730.526 kb on - strandat 730.526 kb on - strandat 730.610 kb on + strandat 730.611 kb on - strandat 730.617 kb on + strandat 730.617 kb on + strandat 730.623 kb on - strandat 730.623 kb on - strandat 730.666 kb on + strandat 730.667 kb on - strandat 730.667 kb on - strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.670 kb on + strandat 730.671 kb on - strandat 730.671 kb on - strandat 731.723 kb on - strandat 731.734 kb on - strandat 731.742 kb on - strandat 731.743 kb on + strandat 731.743 kb on + strandat 731.797 kb on - strandat 731.797 kb on - strandat 731.797 kb on - strandat 731.836 kb on + strandat 731.843 kb on + strandat 731.857 kb on - strandat 731.866 kb on + strandat 731.902 kb on + strandat 731.903 kb on - strandat 731.903 kb on - strandat 731.903 kb on - strandat 731.903 kb on - strandat 731.909 kb on - strandat 731.909 kb on - strandat 731.946 kb on + strandat 731.946 kb on + strandat 731.947 kb on - strandat 731.955 kb on - strandat 731.967 kb on + strandat 731.968 kb on - strandat 732.014 kb on + strandat 732.085 kb on + strandat 732.096 kb on + strandat 732.097 kb on - strandat 732.116 kb on + strandat 732.163 kb on - strandat 732.163 kb on - strandat 732.170 kb on + strandat 732.171 kb on - strandat 732.187 kb on + strandat 732.259 kb on + strand, within Echvi_0648at 732.261 kb on + strand, within Echvi_0648at 732.261 kb on + strand, within Echvi_0648at 732.262 kb on - strand, within Echvi_0648at 732.262 kb on - strand, within Echvi_0648at 732.262 kb on - strand, within Echvi_0648at 732.262 kb on - strand, within Echvi_0648at 732.296 kb on + strand, within Echvi_0648at 732.296 kb on + strand, within Echvi_0648at 732.296 kb on + strand, within Echvi_0648at 732.297 kb on - strand, within Echvi_0648at 732.297 kb on - strand, within Echvi_0648at 732.297 kb on - strand, within Echvi_0648at 732.336 kb on - strand, within Echvi_0648at 732.373 kb on + strand, within Echvi_0648at 732.648 kb on - strand, within Echvi_0648at 732.665 kb on + strandat 732.666 kb on - strandat 732.672 kb on - strandat 732.695 kb on - strandat 732.700 kb on + strandat 732.700 kb on + strandat 732.701 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
remove
729,700 + Echvi_0646 0.33 -0.6
729,700 + Echvi_0646 0.33 -1.0
729,743 + Echvi_0646 0.36 +0.7
729,773 - Echvi_0646 0.39 +0.4
729,820 + Echvi_0646 0.43 -0.3
729,821 - Echvi_0646 0.43 +0.2
729,821 - Echvi_0646 0.43 +1.0
729,827 + Echvi_0646 0.44 -0.9
729,827 + Echvi_0646 0.44 +0.9
729,827 + Echvi_0646 0.44 +0.2
729,828 - Echvi_0646 0.44 -0.4
729,916 + Echvi_0646 0.51 -1.4
730,027 + Echvi_0646 0.60 -2.0
730,040 + Echvi_0646 0.62 -0.2
730,041 - Echvi_0646 0.62 -2.4
730,071 + Echvi_0646 0.64 +1.2
730,071 + Echvi_0646 0.64 +0.9
730,071 + Echvi_0646 0.64 -0.8
730,072 - Echvi_0646 0.64 -2.1
730,084 + Echvi_0646 0.65 +0.3
730,085 - Echvi_0646 0.65 +0.1
730,092 - Echvi_0646 0.66 -1.4
730,097 - Echvi_0646 0.66 -2.1
730,133 + Echvi_0646 0.69 -0.7
730,134 - Echvi_0646 0.70 +0.6
730,179 + Echvi_0646 0.73 -0.3
730,180 - Echvi_0646 0.73 +1.9
730,210 + Echvi_0646 0.76 -1.7
730,210 + Echvi_0646 0.76 -0.6
730,210 + Echvi_0646 0.76 -1.0
730,210 + Echvi_0646 0.76 -0.8
730,212 + Echvi_0646 0.76 +0.0
730,212 + Echvi_0646 0.76 -1.4
730,212 + Echvi_0646 0.76 -0.6
730,212 + Echvi_0646 0.76 -2.6
730,212 + Echvi_0646 0.76 -0.2
730,212 + Echvi_0646 0.76 -0.6
730,213 - Echvi_0646 0.76 +0.2
730,213 - Echvi_0646 0.76 +0.8
730,214 + Echvi_0646 0.76 +0.3
730,256 + Echvi_0646 0.80 -0.8
730,256 + Echvi_0646 0.80 -1.9
730,256 + Echvi_0646 0.80 -1.7
730,257 - Echvi_0646 0.80 -0.7
730,394 + -1.1
730,395 - -1.1
730,463 + +2.6
730,464 - +0.7
730,522 - -0.8
730,525 + -0.1
730,525 + +1.0
730,525 + -0.8
730,525 + +1.0
730,525 + -2.1
730,526 - -0.2
730,526 - +0.6
730,610 + -2.3
730,611 - +0.8
730,617 + +0.6
730,617 + +0.4
730,623 - +0.4
730,623 - +0.4
730,666 + -0.2
730,667 - -0.8
730,667 - -0.8
730,670 + +1.0
730,670 + +3.6
730,670 + +0.3
730,670 + +1.3
730,670 + +1.1
730,670 + +2.0
730,670 + -0.5
730,670 + +1.6
730,671 - -0.6
730,671 - +1.3
731,723 - +0.6
731,734 - +1.1
731,742 - -0.3
731,743 + +0.0
731,743 + +0.3
731,797 - -1.7
731,797 - +1.3
731,797 - -1.0
731,836 + +0.8
731,843 + +0.2
731,857 - -2.7
731,866 + -1.3
731,902 + -0.8
731,903 - +0.3
731,903 - +0.4
731,903 - +0.1
731,903 - -0.2
731,909 - -0.6
731,909 - -2.6
731,946 + +0.4
731,946 + -1.7
731,947 - -2.7
731,955 - -1.0
731,967 + -0.3
731,968 - -0.7
732,014 + -0.4
732,085 + +0.1
732,096 + -1.9
732,097 - +1.0
732,116 + -1.0
732,163 - -2.2
732,163 - +0.6
732,170 + +0.7
732,171 - -2.7
732,187 + -1.4
732,259 + Echvi_0648 0.13 +0.3
732,261 + Echvi_0648 0.13 -0.4
732,261 + Echvi_0648 0.13 -2.1
732,262 - Echvi_0648 0.13 +1.8
732,262 - Echvi_0648 0.13 +0.4
732,262 - Echvi_0648 0.13 -0.3
732,262 - Echvi_0648 0.13 -0.1
732,296 + Echvi_0648 0.20 +0.4
732,296 + Echvi_0648 0.20 -0.7
732,296 + Echvi_0648 0.20 +1.4
732,297 - Echvi_0648 0.20 +1.1
732,297 - Echvi_0648 0.20 +0.4
732,297 - Echvi_0648 0.20 +0.6
732,336 - Echvi_0648 0.28 +1.6
732,373 + Echvi_0648 0.35 -0.0
732,648 - Echvi_0648 0.90 +1.7
732,665 + -1.7
732,666 - -0.1
732,672 - +0.4
732,695 - +0.4
732,700 + +0.2
732,700 + -0.6
732,701 - +0.5

Or see this region's nucleotide sequence