Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0612 and Echvi_0613 are separated by 19 nucleotides Echvi_0613 and Echvi_0614 are separated by 155 nucleotides Echvi_0614 and Echvi_0615 overlap by 41 nucleotides Echvi_0615 and Echvi_0616 are separated by 44 nucleotides
Echvi_0612: Echvi_0612 - F0F1-type ATP synthase, subunit a, at 687,067 to 688,095
_0612
Echvi_0613: Echvi_0613 - hypothetical protein, at 688,115 to 688,468
_0613
Echvi_0614: Echvi_0614 - hypothetical protein, at 688,624 to 688,851
_0614
Echvi_0615: Echvi_0615 - Integral membrane protein CcmA involved in cell shape determination, at 688,811 to 689,218
_0615
Echvi_0616: Echvi_0616 - Membrane proteins related to metalloendopeptidases, at 689,263 to 690,141
_0616
Position (kb) 688
689 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 688.143 kb on - strand at 688.155 kb on - strand, within Echvi_0613 at 688.155 kb on - strand, within Echvi_0613 at 688.171 kb on - strand, within Echvi_0613 at 688.180 kb on - strand, within Echvi_0613 at 688.241 kb on - strand, within Echvi_0613 at 688.252 kb on + strand, within Echvi_0613 at 688.293 kb on - strand, within Echvi_0613 at 688.424 kb on + strand, within Echvi_0613 at 688.442 kb on + strand at 688.547 kb on + strand at 688.582 kb on - strand at 688.592 kb on - strand at 688.592 kb on - strand at 688.625 kb on + strand at 688.650 kb on + strand, within Echvi_0614 at 688.662 kb on + strand, within Echvi_0614 at 688.684 kb on + strand, within Echvi_0614 at 688.685 kb on - strand, within Echvi_0614 at 688.786 kb on + strand, within Echvi_0614 at 688.786 kb on + strand, within Echvi_0614 at 688.787 kb on - strand, within Echvi_0614 at 688.787 kb on - strand, within Echvi_0614 at 688.790 kb on + strand, within Echvi_0614 at 688.790 kb on + strand, within Echvi_0614 at 688.790 kb on + strand, within Echvi_0614 at 688.791 kb on - strand, within Echvi_0614 at 688.791 kb on - strand, within Echvi_0614 at 688.795 kb on + strand, within Echvi_0614 at 688.857 kb on - strand, within Echvi_0615 at 688.882 kb on + strand, within Echvi_0615 at 689.030 kb on + strand, within Echvi_0615 at 689.030 kb on + strand, within Echvi_0615 at 689.031 kb on - strand, within Echvi_0615 at 689.031 kb on - strand, within Echvi_0615 at 689.031 kb on - strand, within Echvi_0615 at 689.031 kb on - strand, within Echvi_0615 at 689.118 kb on - strand, within Echvi_0615 at 689.118 kb on - strand, within Echvi_0615 at 689.142 kb on - strand, within Echvi_0615 at 689.154 kb on - strand, within Echvi_0615 at 689.167 kb on + strand, within Echvi_0615 at 689.180 kb on - strand at 689.204 kb on - strand at 689.252 kb on - strand at 689.252 kb on - strand at 689.257 kb on + strand at 689.258 kb on - strand at 689.258 kb on - strand at 689.278 kb on - strand at 689.309 kb on + strand at 689.309 kb on + strand at 689.310 kb on - strand at 689.310 kb on - strand at 689.314 kb on + strand at 689.315 kb on - strand at 689.315 kb on - strand at 689.315 kb on - strand at 689.355 kb on + strand, within Echvi_0616 at 689.356 kb on - strand, within Echvi_0616 at 689.356 kb on - strand, within Echvi_0616 at 689.414 kb on - strand, within Echvi_0616 at 689.416 kb on + strand, within Echvi_0616 at 689.417 kb on - strand, within Echvi_0616 at 689.424 kb on + strand, within Echvi_0616 at 689.467 kb on + strand, within Echvi_0616
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 688,143 - +0.2 688,155 - Echvi_0613 0.11 +1.8 688,155 - Echvi_0613 0.11 +0.8 688,171 - Echvi_0613 0.16 +1.7 688,180 - Echvi_0613 0.18 +1.6 688,241 - Echvi_0613 0.36 +2.3 688,252 + Echvi_0613 0.39 +2.8 688,293 - Echvi_0613 0.50 +1.6 688,424 + Echvi_0613 0.87 +1.1 688,442 + +0.4 688,547 + -0.7 688,582 - +1.4 688,592 - +0.9 688,592 - -1.5 688,625 + -1.5 688,650 + Echvi_0614 0.11 -2.0 688,662 + Echvi_0614 0.17 -1.7 688,684 + Echvi_0614 0.26 +0.8 688,685 - Echvi_0614 0.27 -1.7 688,786 + Echvi_0614 0.71 +0.9 688,786 + Echvi_0614 0.71 -1.4 688,787 - Echvi_0614 0.71 -1.9 688,787 - Echvi_0614 0.71 -2.6 688,790 + Echvi_0614 0.73 -1.8 688,790 + Echvi_0614 0.73 -0.3 688,790 + Echvi_0614 0.73 +0.0 688,791 - Echvi_0614 0.73 -0.5 688,791 - Echvi_0614 0.73 +0.6 688,795 + Echvi_0614 0.75 +0.0 688,857 - Echvi_0615 0.11 +0.9 688,882 + Echvi_0615 0.17 +1.1 689,030 + Echvi_0615 0.54 +0.8 689,030 + Echvi_0615 0.54 +1.1 689,031 - Echvi_0615 0.54 +0.5 689,031 - Echvi_0615 0.54 +3.6 689,031 - Echvi_0615 0.54 -1.3 689,031 - Echvi_0615 0.54 +1.2 689,118 - Echvi_0615 0.75 +1.3 689,118 - Echvi_0615 0.75 +1.1 689,142 - Echvi_0615 0.81 -0.4 689,154 - Echvi_0615 0.84 -0.1 689,167 + Echvi_0615 0.87 +0.8 689,180 - -1.1 689,204 - +0.6 689,252 - +1.3 689,252 - +1.9 689,257 + +1.1 689,258 - +2.1 689,258 - -0.2 689,278 - +0.3 689,309 + -1.8 689,309 + -0.3 689,310 - -0.2 689,310 - -0.1 689,314 + +0.3 689,315 - -0.1 689,315 - -1.7 689,315 - +0.2 689,355 + Echvi_0616 0.10 +2.4 689,356 - Echvi_0616 0.11 +0.5 689,356 - Echvi_0616 0.11 +0.3 689,414 - Echvi_0616 0.17 -1.8 689,416 + Echvi_0616 0.17 +0.0 689,417 - Echvi_0616 0.18 +0.8 689,424 + Echvi_0616 0.18 +0.3 689,467 + Echvi_0616 0.23 -0.7
Or see this region's nucleotide sequence