Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0538 and Echvi_0539 overlap by 53 nucleotides Echvi_0539 and Echvi_0540 are separated by 219 nucleotides Echvi_0540 and Echvi_0541 overlap by 8 nucleotides
Echvi_0538: Echvi_0538 - hypothetical protein, at 600,230 to 601,024
_0538
Echvi_0539: Echvi_0539 - Protein of unknown function (DUF3037)., at 600,972 to 601,379
_0539
Echvi_0540: Echvi_0540 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 601,599 to 603,032
_0540
Echvi_0541: Echvi_0541 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 603,025 to 606,189
_0541
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 600.664 kb on + strand, within Echvi_0538 at 600.942 kb on - strand, within Echvi_0538 at 600.942 kb on - strand, within Echvi_0538 at 600.960 kb on + strand at 600.960 kb on + strand at 601.019 kb on - strand at 601.020 kb on + strand at 601.020 kb on + strand at 601.021 kb on - strand at 601.027 kb on - strand, within Echvi_0539 at 601.079 kb on - strand, within Echvi_0539 at 601.079 kb on - strand, within Echvi_0539 at 601.114 kb on + strand, within Echvi_0539 at 601.151 kb on - strand, within Echvi_0539 at 601.156 kb on + strand, within Echvi_0539 at 601.157 kb on - strand, within Echvi_0539 at 601.175 kb on - strand, within Echvi_0539 at 601.175 kb on - strand, within Echvi_0539 at 601.241 kb on + strand, within Echvi_0539 at 601.241 kb on + strand, within Echvi_0539 at 601.245 kb on - strand, within Echvi_0539 at 601.332 kb on - strand, within Echvi_0539 at 601.372 kb on + strand at 601.372 kb on + strand at 601.373 kb on - strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.459 kb on + strand at 601.460 kb on - strand at 601.460 kb on - strand at 601.460 kb on - strand at 601.469 kb on + strand at 601.469 kb on + strand at 601.469 kb on + strand at 601.581 kb on + strand at 601.601 kb on - strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.628 kb on - strand at 601.632 kb on - strand at 601.721 kb on + strand at 601.722 kb on - strand at 601.722 kb on - strand at 601.764 kb on - strand, within Echvi_0540 at 601.807 kb on + strand, within Echvi_0540 at 601.859 kb on - strand, within Echvi_0540 at 601.859 kb on - strand, within Echvi_0540 at 601.889 kb on - strand, within Echvi_0540 at 601.947 kb on - strand, within Echvi_0540 at 601.984 kb on + strand, within Echvi_0540 at 601.984 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.987 kb on - strand, within Echvi_0540 at 601.987 kb on - strand, within Echvi_0540 at 602.015 kb on - strand, within Echvi_0540 at 602.024 kb on + strand, within Echvi_0540 at 602.201 kb on + strand, within Echvi_0540 at 602.261 kb on + strand, within Echvi_0540 at 602.262 kb on - strand, within Echvi_0540 at 602.296 kb on + strand, within Echvi_0540 at 602.319 kb on + strand, within Echvi_0540 at 602.319 kb on + strand, within Echvi_0540 at 602.319 kb on + strand, within Echvi_0540 at 602.320 kb on - strand, within Echvi_0540 at 602.414 kb on + strand, within Echvi_0540 at 602.462 kb on - strand, within Echvi_0540 at 602.464 kb on + strand, within Echvi_0540 at 602.464 kb on + strand, within Echvi_0540 at 602.464 kb on + strand, within Echvi_0540 at 602.465 kb on - strand, within Echvi_0540 at 602.465 kb on - strand, within Echvi_0540 at 602.465 kb on - strand, within Echvi_0540 at 602.577 kb on - strand, within Echvi_0540 at 602.610 kb on - strand, within Echvi_0540 at 602.684 kb on + strand, within Echvi_0540 at 602.740 kb on + strand, within Echvi_0540 at 602.740 kb on + strand, within Echvi_0540 at 602.740 kb on + strand, within Echvi_0540 at 602.741 kb on - strand, within Echvi_0540 at 602.741 kb on - strand, within Echvi_0540 at 602.741 kb on - strand, within Echvi_0540 at 602.741 kb on - strand, within Echvi_0540 at 602.796 kb on - strand, within Echvi_0540 at 602.802 kb on - strand, within Echvi_0540 at 602.814 kb on - strand, within Echvi_0540 at 602.814 kb on - strand, within Echvi_0540 at 602.828 kb on + strand, within Echvi_0540 at 602.833 kb on - strand, within Echvi_0540 at 602.833 kb on - strand, within Echvi_0540 at 602.976 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.013 kb on + strand at 603.013 kb on + strand at 603.014 kb on - strand at 603.014 kb on - strand at 603.014 kb on - strand at 603.014 kb on - strand at 603.015 kb on + strand at 603.016 kb on - strand at 603.033 kb on + strand at 603.033 kb on + strand at 603.035 kb on + strand at 603.041 kb on + strand at 603.109 kb on + strand at 603.110 kb on - strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.114 kb on - strand at 603.114 kb on - strand at 603.116 kb on + strand at 603.190 kb on - strand at 603.195 kb on + strand at 603.216 kb on + strand at 603.216 kb on + strand at 603.217 kb on - strand at 603.220 kb on + strand at 603.221 kb on - strand at 603.221 kb on - strand at 603.288 kb on + strand at 603.394 kb on - strand, within Echvi_0541 at 603.413 kb on + strand, within Echvi_0541 at 603.413 kb on + strand, within Echvi_0541 at 603.414 kb on - strand, within Echvi_0541 at 603.417 kb on + strand, within Echvi_0541 at 603.417 kb on + strand, within Echvi_0541 at 603.417 kb on + strand, within Echvi_0541 at 603.418 kb on - strand, within Echvi_0541 at 603.566 kb on + strand, within Echvi_0541 at 603.566 kb on + strand, within Echvi_0541 at 603.566 kb on + strand, within Echvi_0541 at 603.566 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.569 kb on - strand, within Echvi_0541 at 603.569 kb on - strand, within Echvi_0541 at 603.569 kb on - strand, within Echvi_0541 at 603.569 kb on - strand, within Echvi_0541 at 603.599 kb on + strand, within Echvi_0541 at 603.599 kb on + strand, within Echvi_0541 at 603.599 kb on + strand, within Echvi_0541 at 603.622 kb on - strand, within Echvi_0541 at 603.622 kb on - strand, within Echvi_0541 at 603.637 kb on + strand, within Echvi_0541 at 603.637 kb on + strand, within Echvi_0541 at 603.689 kb on + strand, within Echvi_0541 at 603.690 kb on - strand, within Echvi_0541 at 603.690 kb on - strand, within Echvi_0541 at 603.690 kb on - strand, within Echvi_0541 at 603.690 kb on - strand, within Echvi_0541 at 603.728 kb on + strand, within Echvi_0541 at 603.728 kb on + strand, within Echvi_0541 at 603.732 kb on + strand, within Echvi_0541 at 603.732 kb on + strand, within Echvi_0541 at 603.788 kb on + strand, within Echvi_0541 at 603.791 kb on + strand, within Echvi_0541 at 603.835 kb on + strand, within Echvi_0541 at 603.835 kb on + strand, within Echvi_0541 at 603.835 kb on + strand, within Echvi_0541 at 603.836 kb on - strand, within Echvi_0541 at 603.878 kb on + strand, within Echvi_0541 at 603.878 kb on + strand, within Echvi_0541 at 603.878 kb on + strand, within Echvi_0541 at 603.879 kb on - strand, within Echvi_0541 at 603.879 kb on - strand, within Echvi_0541 at 603.879 kb on - strand, within Echvi_0541 at 603.880 kb on + strand, within Echvi_0541 at 603.880 kb on + strand, within Echvi_0541 at 603.880 kb on + strand, within Echvi_0541 at 603.881 kb on - strand, within Echvi_0541 at 603.881 kb on - strand, within Echvi_0541 at 603.906 kb on + strand, within Echvi_0541 at 603.920 kb on + strand, within Echvi_0541 at 603.920 kb on + strand, within Echvi_0541 at 603.925 kb on - strand, within Echvi_0541 at 603.925 kb on - strand, within Echvi_0541 at 603.927 kb on + strand, within Echvi_0541 at 603.927 kb on + strand, within Echvi_0541 at 603.928 kb on - strand, within Echvi_0541 at 603.936 kb on + strand, within Echvi_0541 at 603.937 kb on - strand, within Echvi_0541 at 603.937 kb on - strand, within Echvi_0541 at 603.937 kb on - strand, within Echvi_0541 at 603.937 kb on - strand, within Echvi_0541 at 604.000 kb on + strand, within Echvi_0541 at 604.001 kb on - strand, within Echvi_0541 at 604.001 kb on - strand, within Echvi_0541 at 604.004 kb on - strand, within Echvi_0541 at 604.004 kb on - strand, within Echvi_0541 at 604.013 kb on + strand, within Echvi_0541 at 604.022 kb on + strand, within Echvi_0541
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 600,664 + Echvi_0538 0.55 -0.9 600,942 - Echvi_0538 0.90 -0.8 600,942 - Echvi_0538 0.90 -0.5 600,960 + +1.7 600,960 + -0.6 601,019 - -0.4 601,020 + +2.5 601,020 + +2.3 601,021 - -0.2 601,027 - Echvi_0539 0.13 +1.8 601,079 - Echvi_0539 0.26 +2.0 601,079 - Echvi_0539 0.26 +3.2 601,114 + Echvi_0539 0.35 -1.6 601,151 - Echvi_0539 0.44 +2.8 601,156 + Echvi_0539 0.45 +0.4 601,157 - Echvi_0539 0.45 +1.8 601,175 - Echvi_0539 0.50 +2.5 601,175 - Echvi_0539 0.50 -0.3 601,241 + Echvi_0539 0.66 -1.3 601,241 + Echvi_0539 0.66 -2.2 601,245 - Echvi_0539 0.67 -0.3 601,332 - Echvi_0539 0.88 -0.2 601,372 + +1.3 601,372 + -0.5 601,373 - +1.0 601,377 + -1.2 601,377 + -0.8 601,377 + +0.2 601,377 + -2.6 601,378 - -0.9 601,378 - +0.9 601,378 - +0.1 601,378 - +1.3 601,459 + -0.6 601,460 - -2.2 601,460 - -2.4 601,460 - +1.0 601,469 + -2.4 601,469 + -1.4 601,469 + -0.5 601,581 + +0.9 601,601 - +1.6 601,627 + +2.1 601,627 + -0.2 601,627 + -0.2 601,627 + +2.4 601,627 + +1.0 601,628 - +3.0 601,632 - +2.9 601,721 + +1.8 601,722 - +3.7 601,722 - -0.3 601,764 - Echvi_0540 0.12 +2.6 601,807 + Echvi_0540 0.15 +0.3 601,859 - Echvi_0540 0.18 +3.2 601,859 - Echvi_0540 0.18 +3.0 601,889 - Echvi_0540 0.20 +2.3 601,947 - Echvi_0540 0.24 +3.3 601,984 + Echvi_0540 0.27 +0.4 601,984 + Echvi_0540 0.27 +0.5 601,986 + Echvi_0540 0.27 -0.4 601,986 + Echvi_0540 0.27 +0.5 601,986 + Echvi_0540 0.27 +0.6 601,987 - Echvi_0540 0.27 +3.8 601,987 - Echvi_0540 0.27 +3.9 602,015 - Echvi_0540 0.29 +3.6 602,024 + Echvi_0540 0.30 +0.3 602,201 + Echvi_0540 0.42 -0.4 602,261 + Echvi_0540 0.46 +0.5 602,262 - Echvi_0540 0.46 +2.7 602,296 + Echvi_0540 0.49 -0.9 602,319 + Echvi_0540 0.50 -0.8 602,319 + Echvi_0540 0.50 -0.4 602,319 + Echvi_0540 0.50 +0.0 602,320 - Echvi_0540 0.50 +3.0 602,414 + Echvi_0540 0.57 +1.9 602,462 - Echvi_0540 0.60 +1.9 602,464 + Echvi_0540 0.60 -0.7 602,464 + Echvi_0540 0.60 -0.6 602,464 + Echvi_0540 0.60 -0.5 602,465 - Echvi_0540 0.60 +3.4 602,465 - Echvi_0540 0.60 +3.5 602,465 - Echvi_0540 0.60 +2.9 602,577 - Echvi_0540 0.68 +3.9 602,610 - Echvi_0540 0.71 +3.0 602,684 + Echvi_0540 0.76 -0.2 602,740 + Echvi_0540 0.80 +0.4 602,740 + Echvi_0540 0.80 -0.6 602,740 + Echvi_0540 0.80 -0.0 602,741 - Echvi_0540 0.80 +3.4 602,741 - Echvi_0540 0.80 +3.0 602,741 - Echvi_0540 0.80 +2.2 602,741 - Echvi_0540 0.80 -1.0 602,796 - Echvi_0540 0.83 +2.9 602,802 - Echvi_0540 0.84 +1.7 602,814 - Echvi_0540 0.85 +3.4 602,814 - Echvi_0540 0.85 +2.8 602,828 + Echvi_0540 0.86 -0.8 602,833 - Echvi_0540 0.86 +0.7 602,833 - Echvi_0540 0.86 +0.0 602,976 - +2.5 603,012 - +1.2 603,012 - +1.0 603,012 - +2.0 603,012 - +1.5 603,012 - +1.2 603,012 - +1.5 603,013 + +0.2 603,013 + -0.1 603,014 - +1.4 603,014 - +2.6 603,014 - +1.4 603,014 - +2.2 603,015 + -1.0 603,016 - +2.0 603,033 + -1.0 603,033 + -1.2 603,035 + -1.1 603,041 + +0.4 603,109 + -0.6 603,110 - +4.2 603,113 + +0.4 603,113 + -0.2 603,113 + -0.8 603,113 + +1.4 603,113 + +0.7 603,113 + +2.2 603,113 + +0.8 603,114 - +3.5 603,114 - +4.5 603,116 + +2.0 603,190 - +4.2 603,195 + +0.3 603,216 + +0.3 603,216 + +0.0 603,217 - +3.1 603,220 + +3.0 603,221 - +3.9 603,221 - +4.8 603,288 + -2.7 603,394 - Echvi_0541 0.12 +3.9 603,413 + Echvi_0541 0.12 +0.1 603,413 + Echvi_0541 0.12 +0.2 603,414 - Echvi_0541 0.12 +4.2 603,417 + Echvi_0541 0.12 -1.0 603,417 + Echvi_0541 0.12 -0.5 603,417 + Echvi_0541 0.12 -0.9 603,418 - Echvi_0541 0.12 +2.8 603,566 + Echvi_0541 0.17 -0.8 603,566 + Echvi_0541 0.17 +0.1 603,566 + Echvi_0541 0.17 +0.3 603,566 + Echvi_0541 0.17 -1.0 603,568 + Echvi_0541 0.17 -0.6 603,568 + Echvi_0541 0.17 -1.7 603,568 + Echvi_0541 0.17 +0.0 603,568 + Echvi_0541 0.17 -0.4 603,568 + Echvi_0541 0.17 +0.0 603,569 - Echvi_0541 0.17 +3.1 603,569 - Echvi_0541 0.17 +2.4 603,569 - Echvi_0541 0.17 +2.1 603,569 - Echvi_0541 0.17 +3.6 603,599 + Echvi_0541 0.18 -0.9 603,599 + Echvi_0541 0.18 -0.9 603,599 + Echvi_0541 0.18 +1.1 603,622 - Echvi_0541 0.19 +3.7 603,622 - Echvi_0541 0.19 +4.2 603,637 + Echvi_0541 0.19 +0.1 603,637 + Echvi_0541 0.19 +0.6 603,689 + Echvi_0541 0.21 +2.0 603,690 - Echvi_0541 0.21 +2.5 603,690 - Echvi_0541 0.21 +3.4 603,690 - Echvi_0541 0.21 +4.0 603,690 - Echvi_0541 0.21 +2.6 603,728 + Echvi_0541 0.22 +0.4 603,728 + Echvi_0541 0.22 +0.3 603,732 + Echvi_0541 0.22 +0.8 603,732 + Echvi_0541 0.22 -0.2 603,788 + Echvi_0541 0.24 -0.2 603,791 + Echvi_0541 0.24 -3.4 603,835 + Echvi_0541 0.26 +0.0 603,835 + Echvi_0541 0.26 -0.6 603,835 + Echvi_0541 0.26 -0.1 603,836 - Echvi_0541 0.26 +4.2 603,878 + Echvi_0541 0.27 -1.7 603,878 + Echvi_0541 0.27 -1.8 603,878 + Echvi_0541 0.27 -1.0 603,879 - Echvi_0541 0.27 +3.0 603,879 - Echvi_0541 0.27 +3.1 603,879 - Echvi_0541 0.27 +2.9 603,880 + Echvi_0541 0.27 -0.9 603,880 + Echvi_0541 0.27 -0.0 603,880 + Echvi_0541 0.27 -0.9 603,881 - Echvi_0541 0.27 +3.6 603,881 - Echvi_0541 0.27 +3.5 603,906 + Echvi_0541 0.28 -0.4 603,920 + Echvi_0541 0.28 +1.6 603,920 + Echvi_0541 0.28 +1.0 603,925 - Echvi_0541 0.28 +2.5 603,925 - Echvi_0541 0.28 +3.6 603,927 + Echvi_0541 0.28 -0.3 603,927 + Echvi_0541 0.28 -1.2 603,928 - Echvi_0541 0.29 +3.4 603,936 + Echvi_0541 0.29 -0.1 603,937 - Echvi_0541 0.29 +2.5 603,937 - Echvi_0541 0.29 +1.6 603,937 - Echvi_0541 0.29 +4.2 603,937 - Echvi_0541 0.29 +3.1 604,000 + Echvi_0541 0.31 +0.6 604,001 - Echvi_0541 0.31 +2.3 604,001 - Echvi_0541 0.31 +5.0 604,004 - Echvi_0541 0.31 +4.0 604,004 - Echvi_0541 0.31 +2.6 604,013 + Echvi_0541 0.31 +0.6 604,022 + Echvi_0541 0.32 -2.2
Or see this region's nucleotide sequence