Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0464

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0463 and Echvi_0464 are separated by 41 nucleotidesEchvi_0464 and Echvi_0465 are separated by 333 nucleotides Echvi_0463: Echvi_0463 - Zinc metalloprotease (elastase), at 506,088 to 508,676 _0463 Echvi_0464: Echvi_0464 - Protein of unknown function (DUF2726)., at 508,718 to 509,575 _0464 Echvi_0465: Echvi_0465 - hypothetical protein, at 509,909 to 511,240 _0465 Position (kb) 508 509 510Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 507.743 kb on + strand, within Echvi_0463at 507.744 kb on - strand, within Echvi_0463at 507.769 kb on + strand, within Echvi_0463at 507.793 kb on - strand, within Echvi_0463at 507.836 kb on + strand, within Echvi_0463at 507.836 kb on + strand, within Echvi_0463at 507.837 kb on - strand, within Echvi_0463at 507.838 kb on + strand, within Echvi_0463at 507.838 kb on + strand, within Echvi_0463at 507.839 kb on - strand, within Echvi_0463at 507.884 kb on + strand, within Echvi_0463at 507.884 kb on + strand, within Echvi_0463at 507.884 kb on + strand, within Echvi_0463at 507.884 kb on + strand, within Echvi_0463at 507.884 kb on + strand, within Echvi_0463at 507.884 kb on + strand, within Echvi_0463at 507.884 kb on + strand, within Echvi_0463at 507.884 kb on + strand, within Echvi_0463at 507.885 kb on - strand, within Echvi_0463at 507.885 kb on - strand, within Echvi_0463at 507.885 kb on - strand, within Echvi_0463at 507.885 kb on - strand, within Echvi_0463at 507.885 kb on - strand, within Echvi_0463at 507.888 kb on - strand, within Echvi_0463at 507.990 kb on + strand, within Echvi_0463at 507.990 kb on + strand, within Echvi_0463at 507.990 kb on + strand, within Echvi_0463at 508.013 kb on + strand, within Echvi_0463at 508.013 kb on + strand, within Echvi_0463at 508.014 kb on - strand, within Echvi_0463at 508.017 kb on + strand, within Echvi_0463at 508.017 kb on + strand, within Echvi_0463at 508.017 kb on + strand, within Echvi_0463at 508.017 kb on + strand, within Echvi_0463at 508.017 kb on + strand, within Echvi_0463at 508.017 kb on + strand, within Echvi_0463at 508.018 kb on - strand, within Echvi_0463at 508.018 kb on - strand, within Echvi_0463at 508.018 kb on - strand, within Echvi_0463at 508.018 kb on - strand, within Echvi_0463at 508.019 kb on + strand, within Echvi_0463at 508.019 kb on + strand, within Echvi_0463at 508.019 kb on + strand, within Echvi_0463at 508.069 kb on + strand, within Echvi_0463at 508.070 kb on - strand, within Echvi_0463at 508.104 kb on + strand, within Echvi_0463at 508.105 kb on - strand, within Echvi_0463at 508.110 kb on + strand, within Echvi_0463at 508.110 kb on + strand, within Echvi_0463at 508.111 kb on - strand, within Echvi_0463at 508.111 kb on - strand, within Echvi_0463at 508.140 kb on + strand, within Echvi_0463at 508.140 kb on + strand, within Echvi_0463at 508.140 kb on + strand, within Echvi_0463at 508.140 kb on + strand, within Echvi_0463at 508.141 kb on - strand, within Echvi_0463at 508.141 kb on - strand, within Echvi_0463at 508.141 kb on - strand, within Echvi_0463at 508.141 kb on - strand, within Echvi_0463at 508.141 kb on - strand, within Echvi_0463at 508.141 kb on - strand, within Echvi_0463at 508.141 kb on - strand, within Echvi_0463at 508.142 kb on + strand, within Echvi_0463at 508.143 kb on - strand, within Echvi_0463at 508.151 kb on + strand, within Echvi_0463at 508.152 kb on - strand, within Echvi_0463at 508.157 kb on + strand, within Echvi_0463at 508.158 kb on - strand, within Echvi_0463at 508.161 kb on - strand, within Echvi_0463at 508.165 kb on + strand, within Echvi_0463at 508.178 kb on - strand, within Echvi_0463at 508.178 kb on - strand, within Echvi_0463at 508.179 kb on + strand, within Echvi_0463at 508.198 kb on + strand, within Echvi_0463at 508.198 kb on + strand, within Echvi_0463at 508.198 kb on + strand, within Echvi_0463at 508.198 kb on + strand, within Echvi_0463at 508.205 kb on - strand, within Echvi_0463at 508.208 kb on - strand, within Echvi_0463at 508.228 kb on + strand, within Echvi_0463at 508.229 kb on - strand, within Echvi_0463at 508.259 kb on + strand, within Echvi_0463at 508.263 kb on + strand, within Echvi_0463at 508.318 kb on - strand, within Echvi_0463at 508.372 kb on - strand, within Echvi_0463at 508.404 kb on + strand, within Echvi_0463at 508.405 kb on - strand, within Echvi_0463at 508.409 kb on + strand, within Echvi_0463at 508.410 kb on - strand, within Echvi_0463at 508.410 kb on - strand, within Echvi_0463at 508.410 kb on - strand, within Echvi_0463at 508.410 kb on - strand, within Echvi_0463at 508.422 kb on + strandat 508.423 kb on - strandat 508.425 kb on - strandat 508.457 kb on - strandat 508.526 kb on - strandat 508.526 kb on - strandat 508.614 kb on + strandat 508.618 kb on - strandat 508.618 kb on - strandat 508.618 kb on - strandat 508.621 kb on + strandat 508.621 kb on + strandat 508.621 kb on + strandat 508.622 kb on - strandat 508.622 kb on - strandat 508.622 kb on - strandat 508.625 kb on + strandat 508.625 kb on + strandat 508.626 kb on - strandat 508.626 kb on - strandat 508.626 kb on - strandat 508.626 kb on - strandat 508.626 kb on - strandat 508.675 kb on - strandat 508.697 kb on - strandat 508.697 kb on - strandat 508.703 kb on + strandat 508.704 kb on - strandat 508.704 kb on - strandat 508.705 kb on + strandat 508.706 kb on - strandat 508.706 kb on - strandat 508.706 kb on - strandat 508.708 kb on + strandat 508.744 kb on + strandat 508.744 kb on + strandat 508.745 kb on - strandat 508.745 kb on - strandat 508.748 kb on + strandat 508.749 kb on - strandat 508.792 kb on + strandat 508.801 kb on + strandat 508.801 kb on + strandat 508.801 kb on + strandat 508.802 kb on - strandat 508.802 kb on - strandat 508.802 kb on - strandat 508.805 kb on + strand, within Echvi_0464at 508.806 kb on - strand, within Echvi_0464at 508.806 kb on - strand, within Echvi_0464at 508.838 kb on + strand, within Echvi_0464at 508.838 kb on + strand, within Echvi_0464at 508.839 kb on - strand, within Echvi_0464at 508.844 kb on - strand, within Echvi_0464at 508.844 kb on - strand, within Echvi_0464at 508.862 kb on + strand, within Echvi_0464at 508.863 kb on - strand, within Echvi_0464at 508.880 kb on - strand, within Echvi_0464at 508.955 kb on + strand, within Echvi_0464at 508.995 kb on - strand, within Echvi_0464at 508.995 kb on - strand, within Echvi_0464at 508.995 kb on - strand, within Echvi_0464at 508.995 kb on - strand, within Echvi_0464at 509.026 kb on + strand, within Echvi_0464at 509.026 kb on + strand, within Echvi_0464at 509.026 kb on + strand, within Echvi_0464at 509.026 kb on + strand, within Echvi_0464at 509.027 kb on - strand, within Echvi_0464at 509.069 kb on + strand, within Echvi_0464at 509.078 kb on + strand, within Echvi_0464at 509.140 kb on - strand, within Echvi_0464at 509.144 kb on + strand, within Echvi_0464at 509.145 kb on - strand, within Echvi_0464at 509.195 kb on - strand, within Echvi_0464at 509.221 kb on - strand, within Echvi_0464at 509.225 kb on + strand, within Echvi_0464at 509.243 kb on + strand, within Echvi_0464at 509.244 kb on - strand, within Echvi_0464at 509.259 kb on + strand, within Echvi_0464at 509.263 kb on - strand, within Echvi_0464at 509.271 kb on + strand, within Echvi_0464at 509.271 kb on + strand, within Echvi_0464at 509.271 kb on + strand, within Echvi_0464at 509.272 kb on - strand, within Echvi_0464at 509.272 kb on - strand, within Echvi_0464at 509.275 kb on + strand, within Echvi_0464at 509.275 kb on + strand, within Echvi_0464at 509.275 kb on + strand, within Echvi_0464at 509.275 kb on + strand, within Echvi_0464at 509.276 kb on - strand, within Echvi_0464at 509.366 kb on + strand, within Echvi_0464at 509.422 kb on + strand, within Echvi_0464at 509.429 kb on + strand, within Echvi_0464at 509.434 kb on + strand, within Echvi_0464at 509.434 kb on + strand, within Echvi_0464at 509.450 kb on - strand, within Echvi_0464at 509.489 kb on - strand, within Echvi_0464at 509.503 kb on - strandat 509.506 kb on - strandat 509.506 kb on - strandat 509.554 kb on - strandat 509.554 kb on - strandat 509.582 kb on - strandat 509.587 kb on + strandat 509.624 kb on + strandat 509.624 kb on + strandat 509.632 kb on + strandat 509.644 kb on + strandat 509.675 kb on + strandat 509.688 kb on + strandat 509.688 kb on + strandat 509.713 kb on + strandat 509.960 kb on - strandat 510.008 kb on + strandat 510.011 kb on - strandat 510.032 kb on + strandat 510.033 kb on - strandat 510.033 kb on - strandat 510.065 kb on + strand, within Echvi_0465at 510.066 kb on - strand, within Echvi_0465at 510.109 kb on - strand, within Echvi_0465at 510.133 kb on + strand, within Echvi_0465at 510.134 kb on - strand, within Echvi_0465at 510.185 kb on - strand, within Echvi_0465at 510.185 kb on - strand, within Echvi_0465at 510.206 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.306 kb on - strand, within Echvi_0465at 510.383 kb on - strand, within Echvi_0465at 510.436 kb on - strand, within Echvi_0465at 510.436 kb on - strand, within Echvi_0465at 510.464 kb on - strand, within Echvi_0465at 510.464 kb on - strand, within Echvi_0465at 510.545 kb on - strand, within Echvi_0465at 510.550 kb on - strand, within Echvi_0465at 510.554 kb on - strand, within Echvi_0465

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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507,743 + Echvi_0463 0.64 -1.6
507,744 - Echvi_0463 0.64 +1.1
507,769 + Echvi_0463 0.65 -1.2
507,793 - Echvi_0463 0.66 -1.3
507,836 + Echvi_0463 0.68 -0.3
507,836 + Echvi_0463 0.68 -2.4
507,837 - Echvi_0463 0.68 -1.3
507,838 + Echvi_0463 0.68 -0.8
507,838 + Echvi_0463 0.68 -2.3
507,839 - Echvi_0463 0.68 +0.7
507,884 + Echvi_0463 0.69 -1.0
507,884 + Echvi_0463 0.69 +0.9
507,884 + Echvi_0463 0.69 -3.9
507,884 + Echvi_0463 0.69 -0.3
507,884 + Echvi_0463 0.69 -1.0
507,884 + Echvi_0463 0.69 -2.1
507,884 + Echvi_0463 0.69 +0.8
507,884 + Echvi_0463 0.69 -1.7
507,885 - Echvi_0463 0.69 -1.4
507,885 - Echvi_0463 0.69 +0.0
507,885 - Echvi_0463 0.69 +0.3
507,885 - Echvi_0463 0.69 +2.6
507,885 - Echvi_0463 0.69 -0.6
507,888 - Echvi_0463 0.70 -0.9
507,990 + Echvi_0463 0.73 -0.2
507,990 + Echvi_0463 0.73 +0.3
507,990 + Echvi_0463 0.73 -0.8
508,013 + Echvi_0463 0.74 -0.3
508,013 + Echvi_0463 0.74 -0.3
508,014 - Echvi_0463 0.74 +0.6
508,017 + Echvi_0463 0.75 -1.3
508,017 + Echvi_0463 0.75 +0.2
508,017 + Echvi_0463 0.75 +0.4
508,017 + Echvi_0463 0.75 +1.9
508,017 + Echvi_0463 0.75 +0.5
508,017 + Echvi_0463 0.75 -0.8
508,018 - Echvi_0463 0.75 -0.2
508,018 - Echvi_0463 0.75 -0.8
508,018 - Echvi_0463 0.75 -0.8
508,018 - Echvi_0463 0.75 -0.2
508,019 + Echvi_0463 0.75 -1.8
508,019 + Echvi_0463 0.75 +0.4
508,019 + Echvi_0463 0.75 +0.0
508,069 + Echvi_0463 0.77 -0.1
508,070 - Echvi_0463 0.77 -1.7
508,104 + Echvi_0463 0.78 +1.1
508,105 - Echvi_0463 0.78 -1.7
508,110 + Echvi_0463 0.78 -1.5
508,110 + Echvi_0463 0.78 +0.1
508,111 - Echvi_0463 0.78 -1.0
508,111 - Echvi_0463 0.78 -0.7
508,140 + Echvi_0463 0.79 -0.1
508,140 + Echvi_0463 0.79 +0.1
508,140 + Echvi_0463 0.79 -0.6
508,140 + Echvi_0463 0.79 -0.1
508,141 - Echvi_0463 0.79 -0.2
508,141 - Echvi_0463 0.79 +1.4
508,141 - Echvi_0463 0.79 -2.2
508,141 - Echvi_0463 0.79 +0.1
508,141 - Echvi_0463 0.79 +1.3
508,141 - Echvi_0463 0.79 -2.0
508,141 - Echvi_0463 0.79 +1.0
508,142 + Echvi_0463 0.79 -0.8
508,143 - Echvi_0463 0.79 -2.2
508,151 + Echvi_0463 0.80 +0.8
508,152 - Echvi_0463 0.80 -1.6
508,157 + Echvi_0463 0.80 -0.2
508,158 - Echvi_0463 0.80 +0.3
508,161 - Echvi_0463 0.80 +0.0
508,165 + Echvi_0463 0.80 -0.5
508,178 - Echvi_0463 0.81 +0.4
508,178 - Echvi_0463 0.81 +0.8
508,179 + Echvi_0463 0.81 +0.3
508,198 + Echvi_0463 0.81 +0.4
508,198 + Echvi_0463 0.81 +0.4
508,198 + Echvi_0463 0.81 -1.7
508,198 + Echvi_0463 0.81 +3.7
508,205 - Echvi_0463 0.82 +0.2
508,208 - Echvi_0463 0.82 +0.2
508,228 + Echvi_0463 0.83 +1.1
508,229 - Echvi_0463 0.83 -0.3
508,259 + Echvi_0463 0.84 -1.5
508,263 + Echvi_0463 0.84 -1.2
508,318 - Echvi_0463 0.86 +0.0
508,372 - Echvi_0463 0.88 -1.6
508,404 + Echvi_0463 0.89 +1.0
508,405 - Echvi_0463 0.89 -0.5
508,409 + Echvi_0463 0.90 +0.4
508,410 - Echvi_0463 0.90 -1.5
508,410 - Echvi_0463 0.90 -0.8
508,410 - Echvi_0463 0.90 +0.6
508,410 - Echvi_0463 0.90 -1.0
508,422 + -0.6
508,423 - -0.0
508,425 - -1.0
508,457 - -0.1
508,526 - +1.5
508,526 - +1.3
508,614 + -1.1
508,618 - -0.0
508,618 - -1.8
508,618 - -0.4
508,621 + +0.3
508,621 + +0.9
508,621 + -3.0
508,622 - -2.0
508,622 - -0.2
508,622 - +0.3
508,625 + -0.9
508,625 + +0.2
508,626 - +0.5
508,626 - +0.0
508,626 - +2.4
508,626 - +1.7
508,626 - -1.0
508,675 - +0.9
508,697 - +1.5
508,697 - +1.0
508,703 + -2.5
508,704 - -1.0
508,704 - -0.8
508,705 + -0.1
508,706 - +0.9
508,706 - -0.3
508,706 - +0.7
508,708 + -1.8
508,744 + -1.5
508,744 + +0.5
508,745 - -0.2
508,745 - -1.1
508,748 + -0.1
508,749 - -2.2
508,792 + +0.3
508,801 + -1.2
508,801 + -0.1
508,801 + -0.3
508,802 - +0.3
508,802 - -1.9
508,802 - -1.0
508,805 + Echvi_0464 0.10 +1.3
508,806 - Echvi_0464 0.10 +1.7
508,806 - Echvi_0464 0.10 -3.2
508,838 + Echvi_0464 0.14 -0.6
508,838 + Echvi_0464 0.14 -1.0
508,839 - Echvi_0464 0.14 -2.9
508,844 - Echvi_0464 0.15 -0.6
508,844 - Echvi_0464 0.15 -0.6
508,862 + Echvi_0464 0.17 -0.8
508,863 - Echvi_0464 0.17 -2.2
508,880 - Echvi_0464 0.19 -1.0
508,955 + Echvi_0464 0.28 -0.6
508,995 - Echvi_0464 0.32 -2.2
508,995 - Echvi_0464 0.32 -0.3
508,995 - Echvi_0464 0.32 -1.2
508,995 - Echvi_0464 0.32 -1.0
509,026 + Echvi_0464 0.36 +1.0
509,026 + Echvi_0464 0.36 -2.5
509,026 + Echvi_0464 0.36 +0.0
509,026 + Echvi_0464 0.36 +0.4
509,027 - Echvi_0464 0.36 +0.5
509,069 + Echvi_0464 0.41 -0.6
509,078 + Echvi_0464 0.42 +0.0
509,140 - Echvi_0464 0.49 -1.5
509,144 + Echvi_0464 0.50 -2.0
509,145 - Echvi_0464 0.50 -2.8
509,195 - Echvi_0464 0.56 -1.3
509,221 - Echvi_0464 0.59 +1.3
509,225 + Echvi_0464 0.59 +0.1
509,243 + Echvi_0464 0.61 -0.6
509,244 - Echvi_0464 0.61 +0.2
509,259 + Echvi_0464 0.63 -0.6
509,263 - Echvi_0464 0.64 -0.6
509,271 + Echvi_0464 0.64 +0.2
509,271 + Echvi_0464 0.64 +0.1
509,271 + Echvi_0464 0.64 -1.6
509,272 - Echvi_0464 0.65 -0.6
509,272 - Echvi_0464 0.65 -2.2
509,275 + Echvi_0464 0.65 -2.1
509,275 + Echvi_0464 0.65 -1.1
509,275 + Echvi_0464 0.65 -2.7
509,275 + Echvi_0464 0.65 +0.2
509,276 - Echvi_0464 0.65 -1.0
509,366 + Echvi_0464 0.76 -0.4
509,422 + Echvi_0464 0.82 +0.4
509,429 + Echvi_0464 0.83 +2.4
509,434 + Echvi_0464 0.83 +0.3
509,434 + Echvi_0464 0.83 +0.6
509,450 - Echvi_0464 0.85 -2.5
509,489 - Echvi_0464 0.90 +0.7
509,503 - -1.2
509,506 - +0.6
509,506 - +0.4
509,554 - +0.9
509,554 - +0.3
509,582 - -3.8
509,587 + +1.2
509,624 + -2.4
509,624 + +0.2
509,632 + -0.1
509,644 + -0.2
509,675 + -1.7
509,688 + +0.2
509,688 + +0.3
509,713 + -1.3
509,960 - +0.4
510,008 + -2.1
510,011 - -0.1
510,032 + -2.6
510,033 - +1.6
510,033 - +1.8
510,065 + Echvi_0465 0.12 +0.4
510,066 - Echvi_0465 0.12 -0.1
510,109 - Echvi_0465 0.15 +0.2
510,133 + Echvi_0465 0.17 +1.0
510,134 - Echvi_0465 0.17 +0.2
510,185 - Echvi_0465 0.21 -0.3
510,185 - Echvi_0465 0.21 +1.1
510,206 - Echvi_0465 0.22 +0.7
510,257 - Echvi_0465 0.26 +2.2
510,257 - Echvi_0465 0.26 +1.7
510,257 - Echvi_0465 0.26 -1.8
510,257 - Echvi_0465 0.26 +1.5
510,257 - Echvi_0465 0.26 +0.2
510,306 - Echvi_0465 0.30 +0.2
510,383 - Echvi_0465 0.36 -1.5
510,436 - Echvi_0465 0.40 +0.4
510,436 - Echvi_0465 0.40 -0.1
510,464 - Echvi_0465 0.42 -0.3
510,464 - Echvi_0465 0.42 -0.2
510,545 - Echvi_0465 0.48 +1.2
510,550 - Echvi_0465 0.48 -0.4
510,554 - Echvi_0465 0.48 +0.6

Or see this region's nucleotide sequence