Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0388 and Echvi_0389 are separated by 115 nucleotides Echvi_0389 and Echvi_0390 are separated by 185 nucleotides Echvi_0390 and Echvi_0391 overlap by 11 nucleotides Echvi_0391 and Echvi_0392 are separated by 101 nucleotides
Echvi_0388: Echvi_0388 - hypothetical protein, at 414,749 to 415,171
_0388
Echvi_0389: Echvi_0389 - hypothetical protein, at 415,287 to 415,751
_0389
Echvi_0390: Echvi_0390 - Relaxase/Mobilisation nuclease domain., at 415,937 to 417,112
_0390
Echvi_0391: Echvi_0391 - Bacterial mobilisation protein (MobC)., at 417,102 to 417,446
_0391
Echvi_0392: Echvi_0392 - DNA primase (bacterial type), at 417,548 to 418,410
_0392
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 414.941 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 415.006 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.147 kb on - strand at 415.166 kb on - strand at 415.186 kb on + strand at 415.190 kb on + strand at 415.190 kb on + strand at 415.190 kb on + strand at 415.191 kb on - strand at 415.191 kb on - strand at 415.259 kb on + strand at 415.260 kb on - strand at 415.269 kb on - strand at 415.280 kb on + strand at 415.280 kb on + strand at 415.316 kb on - strand at 415.335 kb on + strand, within Echvi_0389 at 415.356 kb on + strand, within Echvi_0389 at 415.356 kb on + strand, within Echvi_0389 at 415.357 kb on - strand, within Echvi_0389 at 415.385 kb on - strand, within Echvi_0389 at 415.385 kb on - strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.430 kb on - strand, within Echvi_0389 at 415.447 kb on + strand, within Echvi_0389 at 415.468 kb on + strand, within Echvi_0389 at 415.468 kb on + strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.482 kb on - strand, within Echvi_0389 at 415.482 kb on - strand, within Echvi_0389 at 415.555 kb on - strand, within Echvi_0389 at 415.560 kb on - strand, within Echvi_0389 at 415.652 kb on - strand, within Echvi_0389 at 415.665 kb on - strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.675 kb on - strand, within Echvi_0389 at 415.691 kb on + strand, within Echvi_0389 at 415.692 kb on - strand, within Echvi_0389 at 415.750 kb on - strand at 415.754 kb on + strand at 415.755 kb on - strand at 415.804 kb on + strand at 415.804 kb on + strand at 415.805 kb on - strand at 415.815 kb on + strand at 415.815 kb on + strand at 415.815 kb on + strand at 415.817 kb on + strand at 415.817 kb on + strand at 415.818 kb on - strand at 415.818 kb on - strand at 415.825 kb on + strand at 415.826 kb on - strand at 415.826 kb on - strand at 415.826 kb on - strand at 415.837 kb on + strand at 415.896 kb on - strand at 415.905 kb on - strand at 415.905 kb on - strand at 415.913 kb on - strand at 415.948 kb on + strand at 415.948 kb on + strand at 415.949 kb on - strand at 415.991 kb on + strand at 416.035 kb on + strand at 416.045 kb on - strand at 416.065 kb on + strand, within Echvi_0390 at 416.065 kb on + strand, within Echvi_0390 at 416.071 kb on - strand, within Echvi_0390 at 416.109 kb on - strand, within Echvi_0390 at 416.165 kb on + strand, within Echvi_0390 at 416.431 kb on - strand, within Echvi_0390 at 416.431 kb on - strand, within Echvi_0390 at 416.437 kb on - strand, within Echvi_0390 at 416.552 kb on + strand, within Echvi_0390 at 416.556 kb on - strand, within Echvi_0390 at 416.564 kb on + strand, within Echvi_0390 at 416.565 kb on - strand, within Echvi_0390 at 416.657 kb on + strand, within Echvi_0390 at 416.658 kb on - strand, within Echvi_0390 at 416.658 kb on - strand, within Echvi_0390 at 416.713 kb on + strand, within Echvi_0390 at 416.715 kb on + strand, within Echvi_0390 at 416.716 kb on - strand, within Echvi_0390 at 416.726 kb on - strand, within Echvi_0390 at 416.848 kb on - strand, within Echvi_0390 at 416.883 kb on - strand, within Echvi_0390 at 416.907 kb on - strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.920 kb on - strand, within Echvi_0390 at 416.920 kb on - strand, within Echvi_0390 at 416.920 kb on - strand, within Echvi_0390 at 416.920 kb on - strand, within Echvi_0390 at 416.948 kb on - strand, within Echvi_0390 at 416.963 kb on + strand, within Echvi_0390 at 416.964 kb on - strand, within Echvi_0390 at 416.975 kb on + strand, within Echvi_0390 at 416.976 kb on - strand, within Echvi_0390 at 417.062 kb on - strand at 417.062 kb on - strand at 417.146 kb on + strand, within Echvi_0391 at 417.147 kb on - strand, within Echvi_0391 at 417.224 kb on + strand, within Echvi_0391 at 417.227 kb on + strand, within Echvi_0391 at 417.230 kb on + strand, within Echvi_0391 at 417.253 kb on + strand, within Echvi_0391 at 417.399 kb on - strand, within Echvi_0391 at 417.399 kb on - strand, within Echvi_0391 at 417.406 kb on - strand, within Echvi_0391 at 417.407 kb on + strand, within Echvi_0391 at 417.593 kb on + strand at 417.612 kb on + strand at 417.612 kb on + strand at 417.613 kb on - strand at 417.613 kb on - strand at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.681 kb on - strand, within Echvi_0392 at 417.681 kb on - strand, within Echvi_0392 at 417.681 kb on - strand, within Echvi_0392 at 417.681 kb on - strand, within Echvi_0392 at 417.697 kb on - strand, within Echvi_0392 at 417.745 kb on + strand, within Echvi_0392 at 417.745 kb on + strand, within Echvi_0392 at 417.746 kb on - strand, within Echvi_0392 at 417.746 kb on - strand, within Echvi_0392 at 417.767 kb on + strand, within Echvi_0392 at 417.767 kb on + strand, within Echvi_0392 at 417.767 kb on + strand, within Echvi_0392 at 417.768 kb on - strand, within Echvi_0392 at 417.768 kb on - strand, within Echvi_0392 at 417.841 kb on + strand, within Echvi_0392 at 417.841 kb on + strand, within Echvi_0392 at 417.841 kb on + strand, within Echvi_0392 at 417.841 kb on + strand, within Echvi_0392 at 417.842 kb on - strand, within Echvi_0392 at 417.842 kb on - strand, within Echvi_0392 at 417.867 kb on + strand, within Echvi_0392 at 417.870 kb on + strand, within Echvi_0392 at 417.870 kb on + strand, within Echvi_0392 at 417.871 kb on - strand, within Echvi_0392 at 417.871 kb on - strand, within Echvi_0392 at 417.874 kb on + strand, within Echvi_0392 at 417.874 kb on + strand, within Echvi_0392 at 417.874 kb on + strand, within Echvi_0392 at 417.875 kb on - strand, within Echvi_0392 at 417.875 kb on - strand, within Echvi_0392 at 417.903 kb on + strand, within Echvi_0392 at 417.904 kb on - strand, within Echvi_0392 at 417.938 kb on - strand, within Echvi_0392 at 417.975 kb on + strand, within Echvi_0392 at 417.978 kb on + strand at 417.978 kb on + strand, within Echvi_0392 at 417.979 kb on - strand, within Echvi_0392 at 417.979 kb on - strand, within Echvi_0392 at 418.016 kb on + strand, within Echvi_0392 at 418.017 kb on - strand, within Echvi_0392 at 418.017 kb on - strand, within Echvi_0392
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 414,941 - Echvi_0388 0.45 -0.8 414,992 - Echvi_0388 0.57 -0.9 414,992 - Echvi_0388 0.57 -0.3 414,992 - Echvi_0388 0.57 +0.5 414,992 - Echvi_0388 0.57 +1.5 415,006 + Echvi_0388 0.61 +0.0 415,048 + Echvi_0388 0.71 +0.2 415,048 + Echvi_0388 0.71 +0.4 415,049 - Echvi_0388 0.71 -1.0 415,049 - Echvi_0388 0.71 -0.9 415,049 - Echvi_0388 0.71 -0.3 415,147 - +0.2 415,166 - -0.6 415,186 + -3.3 415,190 + -0.6 415,190 + -1.1 415,190 + +0.8 415,191 - -0.2 415,191 - +0.6 415,259 + +0.3 415,260 - -0.5 415,269 - -0.1 415,280 + -1.9 415,280 + +1.7 415,316 - -1.6 415,335 + Echvi_0389 0.10 -1.0 415,356 + Echvi_0389 0.15 +0.5 415,356 + Echvi_0389 0.15 +1.1 415,357 - Echvi_0389 0.15 +1.4 415,385 - Echvi_0389 0.21 +2.7 415,385 - Echvi_0389 0.21 -0.3 415,411 + Echvi_0389 0.27 -2.5 415,411 + Echvi_0389 0.27 -2.3 415,411 + Echvi_0389 0.27 -1.4 415,411 + Echvi_0389 0.27 -1.2 415,412 - Echvi_0389 0.27 -0.7 415,412 - Echvi_0389 0.27 +0.7 415,412 - Echvi_0389 0.27 +1.6 415,430 - Echvi_0389 0.31 +0.6 415,447 + Echvi_0389 0.34 -0.1 415,468 + Echvi_0389 0.39 +0.3 415,468 + Echvi_0389 0.39 -0.0 415,469 - Echvi_0389 0.39 -2.0 415,469 - Echvi_0389 0.39 -1.2 415,469 - Echvi_0389 0.39 +0.7 415,481 + Echvi_0389 0.42 -0.5 415,481 + Echvi_0389 0.42 -2.6 415,481 + Echvi_0389 0.42 +0.5 415,482 - Echvi_0389 0.42 -0.1 415,482 - Echvi_0389 0.42 +1.6 415,555 - Echvi_0389 0.58 +0.7 415,560 - Echvi_0389 0.59 -0.4 415,652 - Echvi_0389 0.78 -1.5 415,665 - Echvi_0389 0.81 +1.1 415,670 + Echvi_0389 0.82 +0.8 415,670 + Echvi_0389 0.82 -0.1 415,670 + Echvi_0389 0.82 -2.2 415,670 + Echvi_0389 0.82 +0.1 415,670 + Echvi_0389 0.82 -0.3 415,670 + Echvi_0389 0.82 -1.3 415,670 + Echvi_0389 0.82 -1.6 415,670 + Echvi_0389 0.82 -0.9 415,670 + Echvi_0389 0.82 -0.0 415,670 + Echvi_0389 0.82 -0.5 415,670 + Echvi_0389 0.82 -2.6 415,670 + Echvi_0389 0.82 +1.2 415,671 - Echvi_0389 0.83 +1.5 415,671 - Echvi_0389 0.83 -1.0 415,671 - Echvi_0389 0.83 +0.5 415,671 - Echvi_0389 0.83 -0.3 415,671 - Echvi_0389 0.83 +0.6 415,671 - Echvi_0389 0.83 -0.6 415,671 - Echvi_0389 0.83 -1.3 415,671 - Echvi_0389 0.83 +0.8 415,671 - Echvi_0389 0.83 +2.4 415,671 - Echvi_0389 0.83 +0.4 415,671 - Echvi_0389 0.83 +0.3 415,671 - Echvi_0389 0.83 -0.5 415,674 + Echvi_0389 0.83 +1.3 415,674 + Echvi_0389 0.83 +4.4 415,674 + Echvi_0389 0.83 +0.5 415,675 - Echvi_0389 0.83 -0.5 415,691 + Echvi_0389 0.87 -0.6 415,692 - Echvi_0389 0.87 -0.9 415,750 - +0.1 415,754 + +0.0 415,755 - +0.4 415,804 + +1.7 415,804 + +0.2 415,805 - +0.2 415,815 + +0.0 415,815 + +0.6 415,815 + +1.0 415,817 + +1.4 415,817 + -1.3 415,818 - -0.2 415,818 - +0.2 415,825 + -0.1 415,826 - -0.7 415,826 - -0.3 415,826 - +1.6 415,837 + -0.2 415,896 - -1.7 415,905 - -0.4 415,905 - +0.5 415,913 - -0.0 415,948 + +1.3 415,948 + +0.0 415,949 - +0.1 415,991 + -0.2 416,035 + -1.7 416,045 - +0.1 416,065 + Echvi_0390 0.11 -2.4 416,065 + Echvi_0390 0.11 +0.6 416,071 - Echvi_0390 0.11 -1.5 416,109 - Echvi_0390 0.15 -3.5 416,165 + Echvi_0390 0.19 -0.1 416,431 - Echvi_0390 0.42 -2.2 416,431 - Echvi_0390 0.42 -0.2 416,437 - Echvi_0390 0.43 -0.0 416,552 + Echvi_0390 0.52 -0.2 416,556 - Echvi_0390 0.53 -1.8 416,564 + Echvi_0390 0.53 +0.6 416,565 - Echvi_0390 0.53 -2.2 416,657 + Echvi_0390 0.61 +0.8 416,658 - Echvi_0390 0.61 -2.7 416,658 - Echvi_0390 0.61 -0.4 416,713 + Echvi_0390 0.66 -0.8 416,715 + Echvi_0390 0.66 +0.0 416,716 - Echvi_0390 0.66 -0.4 416,726 - Echvi_0390 0.67 -0.8 416,848 - Echvi_0390 0.77 -2.5 416,883 - Echvi_0390 0.80 -3.1 416,907 - Echvi_0390 0.82 +0.8 416,919 + Echvi_0390 0.84 -0.7 416,919 + Echvi_0390 0.84 -1.3 416,919 + Echvi_0390 0.84 +0.3 416,919 + Echvi_0390 0.84 -0.4 416,919 + Echvi_0390 0.84 -1.8 416,920 - Echvi_0390 0.84 +0.7 416,920 - Echvi_0390 0.84 -0.3 416,920 - Echvi_0390 0.84 -1.9 416,920 - Echvi_0390 0.84 -0.8 416,948 - Echvi_0390 0.86 -0.3 416,963 + Echvi_0390 0.87 +1.4 416,964 - Echvi_0390 0.87 -1.9 416,975 + Echvi_0390 0.88 -0.4 416,976 - Echvi_0390 0.88 -0.1 417,062 - -1.1 417,062 - -0.9 417,146 + Echvi_0391 0.13 +0.1 417,147 - Echvi_0391 0.13 -0.3 417,224 + Echvi_0391 0.35 +2.1 417,227 + Echvi_0391 0.36 -0.5 417,230 + Echvi_0391 0.37 +0.5 417,253 + Echvi_0391 0.44 -0.7 417,399 - Echvi_0391 0.86 -1.3 417,399 - Echvi_0391 0.86 -1.1 417,406 - Echvi_0391 0.88 -3.5 417,407 + Echvi_0391 0.88 -1.3 417,593 + -2.1 417,612 + +1.6 417,612 + +0.5 417,613 - -0.5 417,613 - +0.7 417,680 + Echvi_0392 0.15 -0.2 417,680 + Echvi_0392 0.15 +2.0 417,680 + Echvi_0392 0.15 -1.1 417,680 + Echvi_0392 0.15 -2.7 417,680 + Echvi_0392 0.15 -0.5 417,680 + Echvi_0392 0.15 -1.0 417,681 - Echvi_0392 0.15 -0.4 417,681 - Echvi_0392 0.15 -3.0 417,681 - Echvi_0392 0.15 -2.0 417,681 - Echvi_0392 0.15 -1.8 417,697 - Echvi_0392 0.17 +0.1 417,745 + Echvi_0392 0.23 -2.0 417,745 + Echvi_0392 0.23 -0.0 417,746 - Echvi_0392 0.23 +0.7 417,746 - Echvi_0392 0.23 -0.5 417,767 + Echvi_0392 0.25 -1.6 417,767 + Echvi_0392 0.25 -0.0 417,767 + Echvi_0392 0.25 +0.7 417,768 - Echvi_0392 0.25 -0.9 417,768 - Echvi_0392 0.25 +0.6 417,841 + Echvi_0392 0.34 +1.0 417,841 + Echvi_0392 0.34 -0.4 417,841 + Echvi_0392 0.34 +1.4 417,841 + Echvi_0392 0.34 +0.5 417,842 - Echvi_0392 0.34 -1.2 417,842 - Echvi_0392 0.34 +0.8 417,867 + Echvi_0392 0.37 +0.3 417,870 + Echvi_0392 0.37 +1.0 417,870 + Echvi_0392 0.37 -2.1 417,871 - Echvi_0392 0.37 +0.4 417,871 - Echvi_0392 0.37 -0.4 417,874 + Echvi_0392 0.38 +0.6 417,874 + Echvi_0392 0.38 -0.5 417,874 + Echvi_0392 0.38 -0.7 417,875 - Echvi_0392 0.38 -1.0 417,875 - Echvi_0392 0.38 -1.5 417,903 + Echvi_0392 0.41 -1.0 417,904 - Echvi_0392 0.41 +1.4 417,938 - Echvi_0392 0.45 +0.8 417,975 + Echvi_0392 0.49 +0.0 417,978 + +2.0 417,978 + Echvi_0392 0.50 -2.4 417,979 - Echvi_0392 0.50 +0.2 417,979 - Echvi_0392 0.50 +1.0 418,016 + Echvi_0392 0.54 -1.3 418,017 - Echvi_0392 0.54 +0.0 418,017 - Echvi_0392 0.54 +0.2
Or see this region's nucleotide sequence