Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0321 and Echvi_0322 overlap by 26 nucleotides Echvi_0322 and Echvi_0323 are separated by 70 nucleotides
Echvi_0321: Echvi_0321 - Glycerol-3-phosphate O-acyltransferase, at 334,654 to 336,354
_0321
Echvi_0322: Echvi_0322 - Glycerol-3-phosphate dehydrogenase, at 336,329 to 337,393
_0322
Echvi_0323: Echvi_0323 - Gluconolactonase, at 337,464 to 338,357
_0323
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 335.355 kb on + strand, within Echvi_0321 at 335.583 kb on + strand, within Echvi_0321 at 335.583 kb on + strand, within Echvi_0321 at 335.583 kb on + strand, within Echvi_0321 at 335.583 kb on + strand, within Echvi_0321 at 335.583 kb on + strand, within Echvi_0321 at 335.585 kb on + strand, within Echvi_0321 at 335.586 kb on - strand, within Echvi_0321 at 335.586 kb on - strand, within Echvi_0321 at 335.623 kb on + strand, within Echvi_0321 at 335.623 kb on + strand, within Echvi_0321 at 335.623 kb on + strand, within Echvi_0321 at 335.623 kb on + strand, within Echvi_0321 at 335.623 kb on + strand, within Echvi_0321 at 335.631 kb on + strand, within Echvi_0321 at 335.689 kb on + strand, within Echvi_0321 at 335.692 kb on + strand, within Echvi_0321 at 335.692 kb on + strand, within Echvi_0321 at 335.722 kb on + strand, within Echvi_0321 at 335.812 kb on + strand, within Echvi_0321 at 335.835 kb on + strand, within Echvi_0321 at 335.853 kb on + strand, within Echvi_0321 at 335.853 kb on + strand, within Echvi_0321 at 335.853 kb on + strand, within Echvi_0321 at 335.895 kb on - strand, within Echvi_0321 at 335.895 kb on - strand, within Echvi_0321 at 335.895 kb on - strand, within Echvi_0321 at 335.900 kb on + strand, within Echvi_0321 at 335.900 kb on + strand, within Echvi_0321 at 335.900 kb on + strand, within Echvi_0321 at 335.900 kb on + strand, within Echvi_0321 at 335.900 kb on + strand, within Echvi_0321 at 335.900 kb on + strand, within Echvi_0321 at 335.900 kb on + strand, within Echvi_0321 at 335.901 kb on - strand, within Echvi_0321 at 335.901 kb on - strand, within Echvi_0321 at 335.901 kb on - strand, within Echvi_0321 at 335.901 kb on - strand, within Echvi_0321 at 335.923 kb on + strand, within Echvi_0321 at 335.923 kb on + strand, within Echvi_0321 at 335.923 kb on + strand, within Echvi_0321 at 335.924 kb on - strand, within Echvi_0321 at 336.233 kb on - strand at 336.301 kb on + strand at 336.301 kb on + strand at 336.302 kb on - strand at 336.302 kb on - strand at 336.307 kb on + strand at 336.580 kb on - strand, within Echvi_0322 at 336.912 kb on - strand, within Echvi_0322 at 337.154 kb on + strand, within Echvi_0322 at 337.327 kb on + strand at 337.346 kb on + strand at 337.346 kb on + strand at 337.349 kb on + strand at 337.350 kb on - strand at 337.626 kb on + strand, within Echvi_0323 at 337.626 kb on + strand, within Echvi_0323 at 337.626 kb on + strand, within Echvi_0323 at 337.656 kb on + strand, within Echvi_0323 at 337.657 kb on - strand, within Echvi_0323 at 337.657 kb on - strand, within Echvi_0323 at 337.692 kb on + strand, within Echvi_0323 at 337.693 kb on - strand, within Echvi_0323 at 337.725 kb on + strand, within Echvi_0323 at 337.889 kb on + strand, within Echvi_0323 at 337.902 kb on + strand, within Echvi_0323 at 337.903 kb on - strand, within Echvi_0323 at 337.956 kb on + strand, within Echvi_0323 at 337.957 kb on - strand, within Echvi_0323 at 338.080 kb on - strand, within Echvi_0323 at 338.126 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.323 kb on - strand at 338.323 kb on - strand at 338.336 kb on - strand at 338.355 kb on + strand at 338.356 kb on - strand at 338.378 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 335,355 + Echvi_0321 0.41 +1.8 335,583 + Echvi_0321 0.55 +0.7 335,583 + Echvi_0321 0.55 -1.3 335,583 + Echvi_0321 0.55 -0.7 335,583 + Echvi_0321 0.55 -2.6 335,583 + Echvi_0321 0.55 +0.6 335,585 + Echvi_0321 0.55 +0.4 335,586 - Echvi_0321 0.55 +1.0 335,586 - Echvi_0321 0.55 +1.7 335,623 + Echvi_0321 0.57 -0.7 335,623 + Echvi_0321 0.57 -1.5 335,623 + Echvi_0321 0.57 -1.1 335,623 + Echvi_0321 0.57 +1.4 335,623 + Echvi_0321 0.57 +1.3 335,631 + Echvi_0321 0.57 -0.3 335,689 + Echvi_0321 0.61 -0.7 335,692 + Echvi_0321 0.61 +1.8 335,692 + Echvi_0321 0.61 +2.5 335,722 + Echvi_0321 0.63 +0.1 335,812 + Echvi_0321 0.68 -0.5 335,835 + Echvi_0321 0.69 -2.2 335,853 + Echvi_0321 0.70 -0.4 335,853 + Echvi_0321 0.70 -1.3 335,853 + Echvi_0321 0.70 +0.9 335,895 - Echvi_0321 0.73 +2.0 335,895 - Echvi_0321 0.73 +0.3 335,895 - Echvi_0321 0.73 +1.5 335,900 + Echvi_0321 0.73 -0.7 335,900 + Echvi_0321 0.73 -3.5 335,900 + Echvi_0321 0.73 +0.3 335,900 + Echvi_0321 0.73 -0.6 335,900 + Echvi_0321 0.73 -0.8 335,900 + Echvi_0321 0.73 -0.3 335,900 + Echvi_0321 0.73 -1.0 335,901 - Echvi_0321 0.73 +3.5 335,901 - Echvi_0321 0.73 +3.2 335,901 - Echvi_0321 0.73 -0.5 335,901 - Echvi_0321 0.73 +2.5 335,923 + Echvi_0321 0.75 -0.6 335,923 + Echvi_0321 0.75 -3.0 335,923 + Echvi_0321 0.75 +1.5 335,924 - Echvi_0321 0.75 +3.0 336,233 - +2.3 336,301 + -0.8 336,301 + -1.6 336,302 - +3.0 336,302 - +2.8 336,307 + +0.8 336,580 - Echvi_0322 0.24 +0.8 336,912 - Echvi_0322 0.55 +0.1 337,154 + Echvi_0322 0.77 +1.3 337,327 + +3.8 337,346 + +3.5 337,346 + +1.4 337,349 + +2.3 337,350 - +2.0 337,626 + Echvi_0323 0.18 +0.6 337,626 + Echvi_0323 0.18 -0.7 337,626 + Echvi_0323 0.18 +0.3 337,656 + Echvi_0323 0.21 -0.4 337,657 - Echvi_0323 0.22 +1.0 337,657 - Echvi_0323 0.22 -0.9 337,692 + Echvi_0323 0.26 -0.5 337,693 - Echvi_0323 0.26 -1.4 337,725 + Echvi_0323 0.29 -1.0 337,889 + Echvi_0323 0.48 -1.4 337,902 + Echvi_0323 0.49 -0.6 337,903 - Echvi_0323 0.49 -0.5 337,956 + Echvi_0323 0.55 -0.7 337,957 - Echvi_0323 0.55 +0.3 338,080 - Echvi_0323 0.69 +0.7 338,126 - Echvi_0323 0.74 -1.6 338,179 - Echvi_0323 0.80 +0.5 338,179 - Echvi_0323 0.80 -1.9 338,179 - Echvi_0323 0.80 -0.4 338,179 - Echvi_0323 0.80 +0.3 338,323 - -0.2 338,323 - -0.4 338,336 - -0.2 338,355 + +1.1 338,356 - +0.7 338,378 + -2.0
Or see this region's nucleotide sequence