Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0046

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0045 and Echvi_0046 are separated by 150 nucleotidesEchvi_0046 and Echvi_0047 are separated by 3 nucleotides Echvi_0045: Echvi_0045 - Protein of unknown function (DUF3108)., at 42,778 to 43,566 _0045 Echvi_0046: Echvi_0046 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 43,717 to 44,406 _0046 Echvi_0047: Echvi_0047 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 44,410 to 45,468 _0047 Position (kb) 43 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 42.717 kb on + strandat 42.717 kb on + strandat 42.718 kb on - strandat 42.718 kb on - strandat 42.718 kb on - strandat 42.740 kb on - strandat 42.775 kb on + strandat 42.775 kb on + strandat 42.778 kb on - strandat 42.791 kb on + strandat 42.829 kb on + strandat 42.858 kb on + strand, within Echvi_0045at 42.858 kb on + strand, within Echvi_0045at 42.960 kb on - strand, within Echvi_0045at 43.005 kb on - strand, within Echvi_0045at 43.020 kb on - strand, within Echvi_0045at 43.020 kb on - strand, within Echvi_0045at 43.023 kb on + strand, within Echvi_0045at 43.024 kb on - strand, within Echvi_0045at 43.140 kb on + strand, within Echvi_0045at 43.191 kb on - strand, within Echvi_0045at 43.234 kb on - strand, within Echvi_0045at 43.252 kb on + strand, within Echvi_0045at 43.253 kb on - strand, within Echvi_0045at 43.253 kb on - strand, within Echvi_0045at 43.255 kb on - strand, within Echvi_0045at 43.255 kb on - strand, within Echvi_0045at 43.294 kb on - strand, within Echvi_0045at 43.306 kb on - strand, within Echvi_0045at 43.330 kb on + strand, within Echvi_0045at 43.330 kb on + strand, within Echvi_0045at 43.330 kb on + strand, within Echvi_0045at 43.331 kb on - strand, within Echvi_0045at 43.331 kb on - strand, within Echvi_0045at 43.348 kb on + strand, within Echvi_0045at 43.430 kb on + strand, within Echvi_0045at 43.431 kb on - strand, within Echvi_0045at 43.449 kb on + strand, within Echvi_0045at 43.450 kb on - strand, within Echvi_0045at 43.452 kb on + strand, within Echvi_0045at 43.453 kb on - strand, within Echvi_0045at 43.453 kb on - strand, within Echvi_0045at 43.525 kb on - strandat 43.565 kb on - strandat 43.751 kb on + strandat 43.786 kb on + strand, within Echvi_0046at 43.807 kb on + strand, within Echvi_0046at 44.004 kb on - strand, within Echvi_0046at 44.019 kb on - strand, within Echvi_0046at 44.019 kb on - strand, within Echvi_0046at 44.034 kb on + strand, within Echvi_0046at 44.158 kb on - strand, within Echvi_0046at 44.316 kb on - strand, within Echvi_0046at 44.404 kb on + strandat 44.409 kb on + strandat 44.409 kb on + strandat 44.409 kb on + strandat 44.410 kb on - strandat 44.454 kb on + strandat 44.454 kb on + strandat 44.455 kb on - strandat 44.456 kb on + strandat 44.456 kb on + strandat 44.601 kb on + strand, within Echvi_0047at 44.602 kb on - strand, within Echvi_0047at 44.602 kb on - strand, within Echvi_0047at 44.606 kb on - strand, within Echvi_0047at 44.714 kb on - strand, within Echvi_0047at 44.831 kb on - strand, within Echvi_0047at 44.873 kb on + strand, within Echvi_0047at 44.949 kb on - strand, within Echvi_0047at 44.983 kb on + strand, within Echvi_0047at 44.984 kb on - strand, within Echvi_0047at 44.984 kb on - strand, within Echvi_0047at 45.057 kb on + strandat 45.058 kb on - strand, within Echvi_0047at 45.076 kb on + strand, within Echvi_0047at 45.077 kb on - strand, within Echvi_0047at 45.094 kb on + strand, within Echvi_0047at 45.095 kb on - strand, within Echvi_0047at 45.118 kb on - strand, within Echvi_0047at 45.163 kb on + strand, within Echvi_0047at 45.164 kb on - strand, within Echvi_0047at 45.164 kb on - strand, within Echvi_0047at 45.204 kb on + strand, within Echvi_0047at 45.362 kb on + strand, within Echvi_0047at 45.362 kb on + strand, within Echvi_0047at 45.363 kb on - strandat 45.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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42,717 + -0.2
42,717 + -2.4
42,718 - -0.1
42,718 - +2.9
42,718 - +1.0
42,740 - -0.9
42,775 + +0.0
42,775 + +0.9
42,778 - -1.5
42,791 + +0.1
42,829 + -0.6
42,858 + Echvi_0045 0.10 +0.2
42,858 + Echvi_0045 0.10 -3.6
42,960 - Echvi_0045 0.23 -0.4
43,005 - Echvi_0045 0.29 -0.9
43,020 - Echvi_0045 0.31 -1.4
43,020 - Echvi_0045 0.31 -0.8
43,023 + Echvi_0045 0.31 -1.6
43,024 - Echvi_0045 0.31 -2.1
43,140 + Echvi_0045 0.46 -4.0
43,191 - Echvi_0045 0.52 -1.7
43,234 - Echvi_0045 0.58 -1.2
43,252 + Echvi_0045 0.60 -1.2
43,253 - Echvi_0045 0.60 +1.7
43,253 - Echvi_0045 0.60 -0.7
43,255 - Echvi_0045 0.60 -0.7
43,255 - Echvi_0045 0.60 +0.5
43,294 - Echvi_0045 0.65 -0.1
43,306 - Echvi_0045 0.67 -1.2
43,330 + Echvi_0045 0.70 -1.2
43,330 + Echvi_0045 0.70 -2.9
43,330 + Echvi_0045 0.70 -0.4
43,331 - Echvi_0045 0.70 -0.5
43,331 - Echvi_0045 0.70 -1.5
43,348 + Echvi_0045 0.72 -1.4
43,430 + Echvi_0045 0.83 -2.0
43,431 - Echvi_0045 0.83 -2.6
43,449 + Echvi_0045 0.85 -1.9
43,450 - Echvi_0045 0.85 +2.8
43,452 + Echvi_0045 0.85 -2.2
43,453 - Echvi_0045 0.86 -2.4
43,453 - Echvi_0045 0.86 -0.6
43,525 - +0.2
43,565 - +0.3
43,751 + +1.4
43,786 + Echvi_0046 0.10 -2.1
43,807 + Echvi_0046 0.13 -1.2
44,004 - Echvi_0046 0.42 +0.2
44,019 - Echvi_0046 0.44 -1.8
44,019 - Echvi_0046 0.44 -1.9
44,034 + Echvi_0046 0.46 -0.2
44,158 - Echvi_0046 0.64 -0.6
44,316 - Echvi_0046 0.87 +0.5
44,404 + -0.4
44,409 + -0.3
44,409 + -0.5
44,409 + +2.1
44,410 - -1.1
44,454 + +3.3
44,454 + -1.2
44,455 - -2.0
44,456 + -0.1
44,456 + -1.5
44,601 + Echvi_0047 0.18 -1.2
44,602 - Echvi_0047 0.18 +0.1
44,602 - Echvi_0047 0.18 -0.2
44,606 - Echvi_0047 0.19 -1.0
44,714 - Echvi_0047 0.29 +0.1
44,831 - Echvi_0047 0.40 -0.5
44,873 + Echvi_0047 0.44 -0.7
44,949 - Echvi_0047 0.51 -0.5
44,983 + Echvi_0047 0.54 -1.4
44,984 - Echvi_0047 0.54 -1.1
44,984 - Echvi_0047 0.54 -1.6
45,057 + -0.2
45,058 - Echvi_0047 0.61 +0.9
45,076 + Echvi_0047 0.63 +0.2
45,077 - Echvi_0047 0.63 +0.5
45,094 + Echvi_0047 0.65 -1.7
45,095 - Echvi_0047 0.65 -1.6
45,118 - Echvi_0047 0.67 -0.6
45,163 + Echvi_0047 0.71 -0.2
45,164 - Echvi_0047 0.71 +3.3
45,164 - Echvi_0047 0.71 +1.0
45,204 + Echvi_0047 0.75 -1.6
45,362 + Echvi_0047 0.90 -0.8
45,362 + Echvi_0047 0.90 -0.9
45,363 - -1.4
45,363 - -2.2

Or see this region's nucleotide sequence