Experiment: L-Ornithine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6179 and Atu6180 are separated by 2 nucleotides Atu6180 and Atu6181 are separated by 270 nucleotides Atu6181 and Atu6182 are separated by 33 nucleotides
Atu6179: Atu6179 - virA/G regulated protein, at 194,449 to 195,057
Atu6179
Atu6180: Atu6180 - virA/G regulated protein, at 195,060 to 195,755
Atu6180
Atu6181: Atu6181 - virA/G regulated topoisomerase, at 196,026 to 196,469
Atu6181
Atu6182: Atu6182 - endonuclease, at 196,503 to 197,846
Atu6182
Position (kb) 196
197 Strain fitness (log2 ratio) -1
0
1
2 at 195.040 kb on - strand at 195.059 kb on - strand at 195.066 kb on + strand at 195.066 kb on + strand at 195.074 kb on - strand at 195.074 kb on - strand at 195.074 kb on - strand at 195.104 kb on - strand at 195.165 kb on - strand, within Atu6180 at 195.237 kb on - strand, within Atu6180 at 195.239 kb on + strand, within Atu6180 at 195.245 kb on - strand, within Atu6180 at 195.272 kb on - strand, within Atu6180 at 195.318 kb on - strand, within Atu6180 at 195.326 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.418 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.442 kb on - strand, within Atu6180 at 195.452 kb on - strand, within Atu6180 at 195.476 kb on - strand, within Atu6180 at 195.523 kb on - strand, within Atu6180 at 195.525 kb on + strand, within Atu6180 at 195.533 kb on - strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.536 kb on + strand, within Atu6180 at 195.569 kb on - strand, within Atu6180 at 195.589 kb on + strand, within Atu6180 at 195.589 kb on - strand, within Atu6180 at 195.589 kb on - strand, within Atu6180 at 195.633 kb on + strand, within Atu6180 at 195.700 kb on - strand at 195.993 kb on + strand at 196.036 kb on + strand at 196.037 kb on - strand at 196.044 kb on - strand at 196.048 kb on + strand at 196.071 kb on - strand, within Atu6181 at 196.104 kb on - strand, within Atu6181 at 196.178 kb on + strand, within Atu6181 at 196.185 kb on + strand, within Atu6181 at 196.192 kb on + strand, within Atu6181 at 196.210 kb on + strand, within Atu6181 at 196.266 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.312 kb on - strand, within Atu6181 at 196.386 kb on + strand, within Atu6181 at 196.396 kb on - strand, within Atu6181 at 196.459 kb on - strand at 196.459 kb on - strand at 196.459 kb on - strand at 196.480 kb on + strand at 196.566 kb on - strand at 196.606 kb on + strand at 196.606 kb on + strand at 196.606 kb on + strand at 196.614 kb on - strand at 196.614 kb on - strand at 196.692 kb on - strand, within Atu6182 at 196.694 kb on - strand, within Atu6182 at 196.740 kb on - strand, within Atu6182 at 196.747 kb on - strand, within Atu6182 at 196.777 kb on + strand, within Atu6182 at 196.785 kb on - strand, within Atu6182 at 196.785 kb on - strand, within Atu6182 at 196.814 kb on - strand, within Atu6182 at 196.829 kb on - strand, within Atu6182 at 196.845 kb on + strand, within Atu6182 at 196.853 kb on - strand, within Atu6182 at 196.880 kb on - strand, within Atu6182 at 196.899 kb on + strand, within Atu6182 at 196.899 kb on + strand, within Atu6182 at 196.902 kb on - strand, within Atu6182 at 196.976 kb on - strand, within Atu6182 at 197.032 kb on + strand, within Atu6182 at 197.034 kb on - strand, within Atu6182 at 197.040 kb on - strand, within Atu6182 at 197.055 kb on - strand, within Atu6182 at 197.075 kb on + strand, within Atu6182 at 197.075 kb on + strand, within Atu6182 at 197.083 kb on + strand, within Atu6182 at 197.083 kb on - strand, within Atu6182 at 197.091 kb on - strand, within Atu6182 at 197.121 kb on + strand, within Atu6182 at 197.121 kb on + strand, within Atu6182 at 197.154 kb on - strand, within Atu6182 at 197.156 kb on + strand, within Atu6182 at 197.193 kb on + strand, within Atu6182 at 197.230 kb on + strand, within Atu6182 at 197.291 kb on + strand, within Atu6182 at 197.353 kb on + strand, within Atu6182 at 197.418 kb on + strand, within Atu6182 at 197.425 kb on + strand, within Atu6182 at 197.426 kb on - strand, within Atu6182 at 197.430 kb on + strand, within Atu6182 at 197.445 kb on - strand, within Atu6182
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine (N) remove 195,040 - +0.6 195,059 - +0.5 195,066 + +1.6 195,066 + +0.1 195,074 - +1.6 195,074 - +0.5 195,074 - +2.6 195,104 - -0.3 195,165 - Atu6180 0.15 -0.1 195,237 - Atu6180 0.25 +1.9 195,239 + Atu6180 0.26 -0.3 195,245 - Atu6180 0.27 +0.5 195,272 - Atu6180 0.30 +2.3 195,318 - Atu6180 0.37 -0.7 195,326 - Atu6180 0.38 -0.7 195,415 - Atu6180 0.51 +1.6 195,415 - Atu6180 0.51 +1.6 195,415 - Atu6180 0.51 -0.3 195,418 + Atu6180 0.51 +0.6 195,434 + Atu6180 0.54 +0.6 195,434 + Atu6180 0.54 -0.0 195,434 + Atu6180 0.54 +0.1 195,442 - Atu6180 0.55 -0.4 195,452 - Atu6180 0.56 +0.6 195,476 - Atu6180 0.60 +1.3 195,523 - Atu6180 0.67 +1.3 195,525 + Atu6180 0.67 +2.0 195,533 - Atu6180 0.68 -1.3 195,535 + Atu6180 0.68 +0.2 195,535 + Atu6180 0.68 -0.3 195,535 + Atu6180 0.68 +0.3 195,535 + Atu6180 0.68 +0.1 195,536 + Atu6180 0.68 -0.3 195,569 - Atu6180 0.73 -0.6 195,589 + Atu6180 0.76 -0.7 195,589 - Atu6180 0.76 -0.8 195,589 - Atu6180 0.76 -0.1 195,633 + Atu6180 0.82 -0.3 195,700 - +0.4 195,993 + +1.2 196,036 + -1.6 196,037 - +0.0 196,044 - +2.7 196,048 + +1.3 196,071 - Atu6181 0.10 +0.8 196,104 - Atu6181 0.18 +1.0 196,178 + Atu6181 0.34 +1.3 196,185 + Atu6181 0.36 -0.1 196,192 + Atu6181 0.37 +1.8 196,210 + Atu6181 0.41 -0.1 196,266 - Atu6181 0.54 +1.5 196,289 - Atu6181 0.59 +1.0 196,289 - Atu6181 0.59 +0.9 196,289 - Atu6181 0.59 +0.6 196,312 - Atu6181 0.64 +1.6 196,386 + Atu6181 0.81 +1.6 196,396 - Atu6181 0.83 +2.1 196,459 - -0.8 196,459 - -0.1 196,459 - +0.1 196,480 + +0.7 196,566 - +0.7 196,606 + -0.1 196,606 + +1.1 196,606 + +2.1 196,614 - -1.0 196,614 - +1.9 196,692 - Atu6182 0.14 -0.4 196,694 - Atu6182 0.14 +0.2 196,740 - Atu6182 0.18 +0.1 196,747 - Atu6182 0.18 +0.9 196,777 + Atu6182 0.20 +0.5 196,785 - Atu6182 0.21 -0.8 196,785 - Atu6182 0.21 +0.3 196,814 - Atu6182 0.23 -0.2 196,829 - Atu6182 0.24 -0.3 196,845 + Atu6182 0.25 +1.5 196,853 - Atu6182 0.26 -0.2 196,880 - Atu6182 0.28 +0.6 196,899 + Atu6182 0.29 -0.4 196,899 + Atu6182 0.29 +0.1 196,902 - Atu6182 0.30 -0.8 196,976 - Atu6182 0.35 -0.2 197,032 + Atu6182 0.39 -1.3 197,034 - Atu6182 0.40 +0.5 197,040 - Atu6182 0.40 +1.0 197,055 - Atu6182 0.41 +1.4 197,075 + Atu6182 0.43 +0.2 197,075 + Atu6182 0.43 -0.5 197,083 + Atu6182 0.43 +0.4 197,083 - Atu6182 0.43 +0.7 197,091 - Atu6182 0.44 +0.5 197,121 + Atu6182 0.46 -0.5 197,121 + Atu6182 0.46 +0.5 197,154 - Atu6182 0.48 -0.2 197,156 + Atu6182 0.49 +1.9 197,193 + Atu6182 0.51 +1.5 197,230 + Atu6182 0.54 +0.1 197,291 + Atu6182 0.59 -0.6 197,353 + Atu6182 0.63 +1.0 197,418 + Atu6182 0.68 +0.3 197,425 + Atu6182 0.69 +1.1 197,426 - Atu6182 0.69 +0.0 197,430 + Atu6182 0.69 -0.9 197,445 - Atu6182 0.70 +0.9
Or see this region's nucleotide sequence