Strain Fitness in Agrobacterium fabrum C58 around Atu6055

Experiment: L-Ornithine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6053 and Atu6054 are separated by 28 nucleotidesAtu6054 and Atu6055 are separated by 323 nucleotidesAtu6055 and Atu6056 are separated by 117 nucleotides Atu6053: Atu6053 - conserved hypothetical protein, at 65,282 to 65,686 Atu6053 Atu6054: Atu6054 - conserved hypothetical protein, at 65,715 to 66,107 Atu6054 Atu6055: Atu6055 - transcriptional regulator, LysR family, at 66,431 to 67,327 Atu6055 Atu6056: Atu6056 - Phenazine biosynthesis protein, at 67,445 to 68,317 Atu6056 Position (kb) 66 67 68Strain fitness (log2 ratio) -1 0 1 2 3 4at 65.477 kb on - strand, within Atu6053at 65.498 kb on - strand, within Atu6053at 65.516 kb on - strand, within Atu6053at 65.518 kb on + strand, within Atu6053at 65.543 kb on + strand, within Atu6053at 65.608 kb on - strand, within Atu6053at 65.643 kb on - strand, within Atu6053at 65.697 kb on + strandat 65.704 kb on + strandat 65.705 kb on - strandat 65.836 kb on + strand, within Atu6054at 65.841 kb on + strand, within Atu6054at 65.882 kb on - strand, within Atu6054at 65.886 kb on + strand, within Atu6054at 65.887 kb on - strand, within Atu6054at 65.894 kb on - strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.934 kb on - strand, within Atu6054at 65.934 kb on - strand, within Atu6054at 66.096 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.118 kb on + strandat 66.124 kb on - strandat 66.124 kb on - strandat 66.138 kb on - strandat 66.148 kb on + strandat 66.171 kb on + strandat 66.171 kb on + strandat 66.179 kb on - strandat 66.227 kb on + strandat 66.351 kb on - strandat 66.401 kb on + strandat 66.452 kb on - strandat 66.452 kb on - strandat 66.475 kb on - strandat 66.483 kb on + strandat 66.552 kb on - strand, within Atu6055at 66.687 kb on + strand, within Atu6055at 66.714 kb on - strand, within Atu6055at 66.767 kb on - strand, within Atu6055at 66.777 kb on - strand, within Atu6055at 66.779 kb on + strand, within Atu6055at 66.847 kb on + strand, within Atu6055at 66.847 kb on + strand, within Atu6055at 66.847 kb on + strand, within Atu6055at 66.855 kb on - strand, within Atu6055at 66.860 kb on - strand, within Atu6055at 66.860 kb on - strand, within Atu6055at 66.909 kb on + strand, within Atu6055at 66.969 kb on + strand, within Atu6055at 66.969 kb on + strand, within Atu6055at 66.973 kb on + strand, within Atu6055at 67.031 kb on - strand, within Atu6055at 67.059 kb on + strand, within Atu6055at 67.091 kb on + strand, within Atu6055at 67.110 kb on + strand, within Atu6055at 67.120 kb on + strand, within Atu6055at 67.122 kb on + strand, within Atu6055at 67.122 kb on + strand, within Atu6055at 67.122 kb on + strand, within Atu6055at 67.130 kb on - strand, within Atu6055at 67.172 kb on + strand, within Atu6055at 67.177 kb on + strand, within Atu6055at 67.177 kb on + strand, within Atu6055at 67.177 kb on + strand, within Atu6055at 67.351 kb on - strandat 67.383 kb on + strandat 67.385 kb on + strandat 67.385 kb on + strandat 67.388 kb on + strandat 67.388 kb on + strandat 67.393 kb on - strandat 67.396 kb on - strandat 67.471 kb on - strandat 67.533 kb on + strand, within Atu6056at 67.541 kb on - strand, within Atu6056at 67.579 kb on + strand, within Atu6056at 67.598 kb on - strand, within Atu6056at 67.654 kb on + strand, within Atu6056at 67.662 kb on + strand, within Atu6056at 67.683 kb on + strand, within Atu6056at 67.690 kb on + strand, within Atu6056at 67.690 kb on + strand, within Atu6056at 67.698 kb on - strand, within Atu6056at 67.748 kb on - strand, within Atu6056at 67.760 kb on - strand, within Atu6056at 67.834 kb on - strand, within Atu6056at 67.844 kb on - strand, within Atu6056at 67.862 kb on + strand, within Atu6056at 67.869 kb on + strand, within Atu6056at 67.875 kb on + strand, within Atu6056at 67.881 kb on + strand, within Atu6056at 67.882 kb on - strand, within Atu6056at 67.883 kb on - strand, within Atu6056at 67.888 kb on - strand, within Atu6056at 67.889 kb on - strand, within Atu6056at 67.993 kb on - strand, within Atu6056at 68.020 kb on + strand, within Atu6056at 68.040 kb on + strand, within Atu6056at 68.041 kb on - strand, within Atu6056at 68.079 kb on - strand, within Atu6056at 68.089 kb on - strand, within Atu6056at 68.089 kb on - strand, within Atu6056at 68.095 kb on + strand, within Atu6056at 68.171 kb on + strand, within Atu6056at 68.212 kb on + strand, within Atu6056at 68.224 kb on - strand, within Atu6056at 68.238 kb on - strandat 68.264 kb on - strandat 68.291 kb on - strandat 68.296 kb on - strandat 68.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
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65,477 - Atu6053 0.48 +0.4
65,498 - Atu6053 0.53 +1.1
65,516 - Atu6053 0.58 -0.6
65,518 + Atu6053 0.58 +0.1
65,543 + Atu6053 0.64 -0.7
65,608 - Atu6053 0.80 +1.0
65,643 - Atu6053 0.89 +0.3
65,697 + +1.5
65,704 + -0.3
65,705 - +0.1
65,836 + Atu6054 0.31 +1.5
65,841 + Atu6054 0.32 +0.4
65,882 - Atu6054 0.42 +2.3
65,886 + Atu6054 0.44 +1.3
65,887 - Atu6054 0.44 +0.2
65,894 - Atu6054 0.46 +0.6
65,933 + Atu6054 0.55 +1.1
65,933 + Atu6054 0.55 +0.7
65,933 + Atu6054 0.55 +1.1
65,933 + Atu6054 0.55 +0.4
65,933 + Atu6054 0.55 +0.0
65,934 - Atu6054 0.56 -0.1
65,934 - Atu6054 0.56 -0.3
66,096 + +0.7
66,116 + -0.5
66,116 + +0.2
66,116 + -0.4
66,116 + -0.0
66,118 + -0.2
66,124 - -1.0
66,124 - +1.1
66,138 - -0.4
66,148 + +1.6
66,171 + +1.1
66,171 + +0.4
66,179 - +0.6
66,227 + +0.0
66,351 - +1.5
66,401 + +0.8
66,452 - +1.6
66,452 - +0.1
66,475 - -0.1
66,483 + -0.1
66,552 - Atu6055 0.13 +1.6
66,687 + Atu6055 0.29 -0.4
66,714 - Atu6055 0.32 +1.3
66,767 - Atu6055 0.37 +0.7
66,777 - Atu6055 0.39 +1.9
66,779 + Atu6055 0.39 -0.1
66,847 + Atu6055 0.46 +0.6
66,847 + Atu6055 0.46 +3.6
66,847 + Atu6055 0.46 +1.0
66,855 - Atu6055 0.47 +0.9
66,860 - Atu6055 0.48 +0.9
66,860 - Atu6055 0.48 +0.1
66,909 + Atu6055 0.53 +1.0
66,969 + Atu6055 0.60 +1.9
66,969 + Atu6055 0.60 +2.1
66,973 + Atu6055 0.60 -1.1
67,031 - Atu6055 0.67 +0.6
67,059 + Atu6055 0.70 -0.1
67,091 + Atu6055 0.74 +2.3
67,110 + Atu6055 0.76 +1.8
67,120 + Atu6055 0.77 +1.3
67,122 + Atu6055 0.77 +0.8
67,122 + Atu6055 0.77 +2.7
67,122 + Atu6055 0.77 -0.6
67,130 - Atu6055 0.78 +0.2
67,172 + Atu6055 0.83 +1.6
67,177 + Atu6055 0.83 +0.4
67,177 + Atu6055 0.83 +1.1
67,177 + Atu6055 0.83 +1.2
67,351 - -0.3
67,383 + -0.4
67,385 + -0.8
67,385 + -0.3
67,388 + +0.2
67,388 + +1.5
67,393 - +0.2
67,396 - +0.5
67,471 - +0.4
67,533 + Atu6056 0.10 +0.5
67,541 - Atu6056 0.11 -0.1
67,579 + Atu6056 0.15 -0.4
67,598 - Atu6056 0.18 -0.6
67,654 + Atu6056 0.24 +1.9
67,662 + Atu6056 0.25 +0.7
67,683 + Atu6056 0.27 +0.1
67,690 + Atu6056 0.28 -0.2
67,690 + Atu6056 0.28 +1.1
67,698 - Atu6056 0.29 +0.0
67,748 - Atu6056 0.35 +2.3
67,760 - Atu6056 0.36 +0.7
67,834 - Atu6056 0.45 +0.3
67,844 - Atu6056 0.46 -0.7
67,862 + Atu6056 0.48 +2.3
67,869 + Atu6056 0.49 -1.5
67,875 + Atu6056 0.49 +3.9
67,881 + Atu6056 0.50 -0.8
67,882 - Atu6056 0.50 -0.8
67,883 - Atu6056 0.50 +0.9
67,888 - Atu6056 0.51 +0.1
67,889 - Atu6056 0.51 -0.2
67,993 - Atu6056 0.63 +0.3
68,020 + Atu6056 0.66 -0.9
68,040 + Atu6056 0.68 +0.4
68,041 - Atu6056 0.68 +0.3
68,079 - Atu6056 0.73 -0.4
68,089 - Atu6056 0.74 -0.9
68,089 - Atu6056 0.74 +1.8
68,095 + Atu6056 0.74 +0.7
68,171 + Atu6056 0.83 +0.6
68,212 + Atu6056 0.88 -1.1
68,224 - Atu6056 0.89 +1.1
68,238 - -1.2
68,264 - +0.1
68,291 - -0.8
68,296 - +0.1
68,301 - +0.9

Or see this region's nucleotide sequence