Experiment: L-Ornithine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5533 and Atu5534 are separated by 1 nucleotides Atu5534 and Atu5535 overlap by 1 nucleotides Atu5535 and Atu5536 are separated by 37 nucleotides
Atu5533: Atu5533 - ABC transporter membrane spanning protein, at 527,283 to 528,422
Atu5533
Atu5534: Atu5534 - ABC transporter nucleotide binding/ATPase, at 528,424 to 529,173
Atu5534
Atu5535: Atu5535 - ABC transporter nucleotide binding/ATPase, at 529,173 to 529,868
Atu5535
Atu5536: Atu5536 - amidohydrolase, at 529,906 to 531,645
Atu5536
Position (kb) 528
529
530 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 527.424 kb on + strand, within Atu5533 at 527.514 kb on - strand, within Atu5533 at 527.528 kb on - strand, within Atu5533 at 527.676 kb on - strand, within Atu5533 at 527.682 kb on - strand, within Atu5533 at 527.767 kb on + strand, within Atu5533 at 527.785 kb on - strand, within Atu5533 at 527.808 kb on - strand, within Atu5533 at 527.832 kb on + strand, within Atu5533 at 527.893 kb on + strand, within Atu5533 at 527.901 kb on - strand, within Atu5533 at 527.908 kb on + strand, within Atu5533 at 527.930 kb on + strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 528.024 kb on - strand, within Atu5533 at 528.047 kb on - strand, within Atu5533 at 528.094 kb on - strand, within Atu5533 at 528.100 kb on + strand, within Atu5533 at 528.163 kb on - strand, within Atu5533 at 528.163 kb on - strand, within Atu5533 at 528.165 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.237 kb on - strand, within Atu5533 at 528.263 kb on + strand, within Atu5533 at 528.345 kb on - strand at 528.368 kb on + strand at 528.531 kb on + strand, within Atu5534 at 528.600 kb on + strand, within Atu5534 at 528.608 kb on - strand, within Atu5534 at 528.722 kb on + strand, within Atu5534 at 528.754 kb on - strand, within Atu5534 at 528.754 kb on - strand, within Atu5534 at 528.819 kb on - strand, within Atu5534 at 528.874 kb on - strand, within Atu5534 at 528.884 kb on + strand, within Atu5534 at 528.902 kb on - strand, within Atu5534 at 528.939 kb on + strand, within Atu5534 at 528.977 kb on - strand, within Atu5534 at 528.977 kb on - strand, within Atu5534 at 528.979 kb on + strand, within Atu5534 at 528.987 kb on - strand, within Atu5534 at 529.018 kb on - strand, within Atu5534 at 529.043 kb on - strand, within Atu5534 at 529.098 kb on - strand, within Atu5534 at 529.098 kb on - strand, within Atu5534 at 529.117 kb on + strand at 529.125 kb on - strand at 529.156 kb on - strand at 529.204 kb on - strand at 529.204 kb on - strand at 529.228 kb on + strand at 529.228 kb on + strand at 529.228 kb on + strand at 529.236 kb on - strand at 529.236 kb on - strand at 529.236 kb on - strand at 529.301 kb on + strand, within Atu5535 at 529.301 kb on + strand, within Atu5535 at 529.309 kb on + strand, within Atu5535 at 529.364 kb on - strand, within Atu5535 at 529.397 kb on + strand, within Atu5535 at 529.401 kb on + strand, within Atu5535 at 529.416 kb on + strand, within Atu5535 at 529.421 kb on + strand, within Atu5535 at 529.424 kb on - strand, within Atu5535 at 529.424 kb on - strand, within Atu5535 at 529.429 kb on - strand, within Atu5535 at 529.474 kb on + strand, within Atu5535 at 529.546 kb on + strand, within Atu5535 at 529.556 kb on + strand, within Atu5535 at 529.607 kb on + strand, within Atu5535 at 529.622 kb on + strand, within Atu5535 at 529.622 kb on + strand, within Atu5535 at 529.657 kb on - strand, within Atu5535 at 529.672 kb on - strand, within Atu5535 at 529.672 kb on - strand, within Atu5535 at 529.768 kb on + strand, within Atu5535 at 529.768 kb on + strand, within Atu5535 at 529.842 kb on - strand at 529.853 kb on + strand at 529.853 kb on + strand at 529.853 kb on + strand at 529.854 kb on + strand at 529.861 kb on - strand at 529.861 kb on - strand at 529.861 kb on - strand at 529.872 kb on - strand at 529.920 kb on + strand at 529.928 kb on - strand at 529.942 kb on - strand at 530.026 kb on + strand at 530.036 kb on - strand at 530.059 kb on + strand at 530.093 kb on - strand, within Atu5536 at 530.108 kb on + strand, within Atu5536 at 530.167 kb on - strand, within Atu5536
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine (N) remove 527,424 + Atu5533 0.12 -1.4 527,514 - Atu5533 0.20 +0.1 527,528 - Atu5533 0.21 -0.4 527,676 - Atu5533 0.34 +0.2 527,682 - Atu5533 0.35 -0.6 527,767 + Atu5533 0.42 +0.5 527,785 - Atu5533 0.44 +0.6 527,808 - Atu5533 0.46 -0.0 527,832 + Atu5533 0.48 -0.3 527,893 + Atu5533 0.54 +1.0 527,901 - Atu5533 0.54 +0.3 527,908 + Atu5533 0.55 -1.5 527,930 + Atu5533 0.57 +0.0 527,999 - Atu5533 0.63 +0.3 527,999 - Atu5533 0.63 +0.8 527,999 - Atu5533 0.63 +1.5 528,024 - Atu5533 0.65 +0.1 528,047 - Atu5533 0.67 +3.8 528,094 - Atu5533 0.71 -0.3 528,100 + Atu5533 0.72 +2.4 528,163 - Atu5533 0.77 +0.2 528,163 - Atu5533 0.77 -0.8 528,165 + Atu5533 0.77 +0.6 528,210 + Atu5533 0.81 +0.8 528,210 + Atu5533 0.81 +1.2 528,218 - Atu5533 0.82 +0.9 528,218 - Atu5533 0.82 +2.0 528,237 - Atu5533 0.84 +0.7 528,263 + Atu5533 0.86 +0.2 528,345 - +0.8 528,368 + -0.0 528,531 + Atu5534 0.14 -0.4 528,600 + Atu5534 0.23 -0.3 528,608 - Atu5534 0.25 +1.5 528,722 + Atu5534 0.40 +1.4 528,754 - Atu5534 0.44 -1.1 528,754 - Atu5534 0.44 +4.8 528,819 - Atu5534 0.53 -0.1 528,874 - Atu5534 0.60 -0.3 528,884 + Atu5534 0.61 +1.2 528,902 - Atu5534 0.64 -1.3 528,939 + Atu5534 0.69 -0.1 528,977 - Atu5534 0.74 +0.0 528,977 - Atu5534 0.74 -0.8 528,979 + Atu5534 0.74 +2.2 528,987 - Atu5534 0.75 -1.3 529,018 - Atu5534 0.79 +0.4 529,043 - Atu5534 0.83 +3.5 529,098 - Atu5534 0.90 +1.7 529,098 - Atu5534 0.90 -0.8 529,117 + +0.1 529,125 - -1.7 529,156 - +0.6 529,204 - +0.9 529,204 - +1.0 529,228 + +0.1 529,228 + +1.4 529,228 + +0.8 529,236 - -0.1 529,236 - -0.8 529,236 - -0.4 529,301 + Atu5535 0.18 -0.2 529,301 + Atu5535 0.18 +0.2 529,309 + Atu5535 0.20 +0.2 529,364 - Atu5535 0.27 +0.6 529,397 + Atu5535 0.32 +0.8 529,401 + Atu5535 0.33 +0.2 529,416 + Atu5535 0.35 -0.1 529,421 + Atu5535 0.36 -0.0 529,424 - Atu5535 0.36 -0.2 529,424 - Atu5535 0.36 -0.6 529,429 - Atu5535 0.37 +0.6 529,474 + Atu5535 0.43 -0.3 529,546 + Atu5535 0.54 +2.0 529,556 + Atu5535 0.55 +0.7 529,607 + Atu5535 0.62 +1.5 529,622 + Atu5535 0.65 +0.0 529,622 + Atu5535 0.65 -0.9 529,657 - Atu5535 0.70 +0.9 529,672 - Atu5535 0.72 +0.9 529,672 - Atu5535 0.72 -0.4 529,768 + Atu5535 0.85 -0.1 529,768 + Atu5535 0.85 -0.2 529,842 - -0.2 529,853 + +1.6 529,853 + +0.8 529,853 + -0.8 529,854 + +0.9 529,861 - +0.8 529,861 - -0.1 529,861 - -0.3 529,872 - +0.4 529,920 + +3.8 529,928 - -0.7 529,942 - -0.3 530,026 + -0.5 530,036 - +0.7 530,059 + +0.2 530,093 - Atu5536 0.11 -0.3 530,108 + Atu5536 0.12 +0.0 530,167 - Atu5536 0.15 +0.3
Or see this region's nucleotide sequence