Experiment: L-Ornithine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5531 and Atu5532 are separated by 238 nucleotides Atu5532 and Atu5533 are separated by 1 nucleotides
Atu5531: Atu5531 - ABC transporter substrate binding protein, at 524,983 to 526,233
Atu5531
Atu5532: Atu5532 - ABC transporter membrane spanning protein, at 526,472 to 527,281
Atu5532
Atu5533: Atu5533 - ABC transporter membrane spanning protein, at 527,283 to 528,422
Atu5533
Position (kb) 526
527
528 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 525.560 kb on - strand, within Atu5531 at 525.744 kb on - strand, within Atu5531 at 525.824 kb on + strand, within Atu5531 at 525.824 kb on + strand, within Atu5531 at 525.824 kb on + strand, within Atu5531 at 525.870 kb on + strand, within Atu5531 at 525.870 kb on + strand, within Atu5531 at 525.870 kb on + strand, within Atu5531 at 525.878 kb on - strand, within Atu5531 at 525.878 kb on - strand, within Atu5531 at 525.880 kb on + strand, within Atu5531 at 526.022 kb on - strand, within Atu5531 at 526.022 kb on - strand, within Atu5531 at 526.038 kb on + strand, within Atu5531 at 526.038 kb on + strand, within Atu5531 at 526.046 kb on - strand, within Atu5531 at 526.078 kb on - strand, within Atu5531 at 526.116 kb on + strand at 526.196 kb on - strand at 526.227 kb on + strand at 526.229 kb on - strand at 526.229 kb on - strand at 526.233 kb on + strand at 526.285 kb on - strand at 526.402 kb on + strand at 526.416 kb on + strand at 526.422 kb on - strand at 526.493 kb on - strand at 526.531 kb on + strand at 526.569 kb on + strand, within Atu5532 at 526.670 kb on + strand, within Atu5532 at 526.707 kb on + strand, within Atu5532 at 526.709 kb on - strand, within Atu5532 at 526.713 kb on + strand, within Atu5532 at 526.713 kb on + strand, within Atu5532 at 526.715 kb on - strand, within Atu5532 at 526.782 kb on + strand, within Atu5532 at 526.830 kb on - strand, within Atu5532 at 526.916 kb on - strand, within Atu5532 at 526.925 kb on + strand, within Atu5532 at 526.974 kb on + strand, within Atu5532 at 527.017 kb on - strand, within Atu5532 at 527.142 kb on - strand, within Atu5532 at 527.143 kb on - strand, within Atu5532 at 527.260 kb on + strand at 527.273 kb on - strand at 527.273 kb on - strand at 527.419 kb on + strand, within Atu5533 at 527.424 kb on + strand, within Atu5533 at 527.514 kb on - strand, within Atu5533 at 527.528 kb on - strand, within Atu5533 at 527.676 kb on - strand, within Atu5533 at 527.682 kb on - strand, within Atu5533 at 527.767 kb on + strand, within Atu5533 at 527.785 kb on - strand, within Atu5533 at 527.808 kb on - strand, within Atu5533 at 527.832 kb on + strand, within Atu5533 at 527.893 kb on + strand, within Atu5533 at 527.901 kb on - strand, within Atu5533 at 527.908 kb on + strand, within Atu5533 at 527.930 kb on + strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 528.024 kb on - strand, within Atu5533 at 528.047 kb on - strand, within Atu5533 at 528.094 kb on - strand, within Atu5533 at 528.100 kb on + strand, within Atu5533 at 528.163 kb on - strand, within Atu5533 at 528.163 kb on - strand, within Atu5533 at 528.165 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.237 kb on - strand, within Atu5533 at 528.263 kb on + strand, within Atu5533
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine (N) remove 525,560 - Atu5531 0.46 +0.2 525,744 - Atu5531 0.61 -0.4 525,824 + Atu5531 0.67 +0.9 525,824 + Atu5531 0.67 -1.1 525,824 + Atu5531 0.67 +1.2 525,870 + Atu5531 0.71 +0.2 525,870 + Atu5531 0.71 -0.5 525,870 + Atu5531 0.71 +2.2 525,878 - Atu5531 0.72 +0.3 525,878 - Atu5531 0.72 +0.5 525,880 + Atu5531 0.72 +1.0 526,022 - Atu5531 0.83 -0.2 526,022 - Atu5531 0.83 +0.2 526,038 + Atu5531 0.84 +0.2 526,038 + Atu5531 0.84 +0.0 526,046 - Atu5531 0.85 +2.8 526,078 - Atu5531 0.88 -0.4 526,116 + +1.0 526,196 - +0.1 526,227 + +1.8 526,229 - +0.2 526,229 - -0.3 526,233 + +0.3 526,285 - -0.0 526,402 + +3.8 526,416 + -0.3 526,422 - +0.3 526,493 - +0.5 526,531 + +0.6 526,569 + Atu5532 0.12 +0.1 526,670 + Atu5532 0.24 +0.6 526,707 + Atu5532 0.29 +0.6 526,709 - Atu5532 0.29 +0.2 526,713 + Atu5532 0.30 +1.1 526,713 + Atu5532 0.30 +1.5 526,715 - Atu5532 0.30 -1.6 526,782 + Atu5532 0.38 +0.7 526,830 - Atu5532 0.44 -0.9 526,916 - Atu5532 0.55 -0.4 526,925 + Atu5532 0.56 +1.5 526,974 + Atu5532 0.62 +0.4 527,017 - Atu5532 0.67 -0.3 527,142 - Atu5532 0.83 -0.4 527,143 - Atu5532 0.83 -0.5 527,260 + +1.8 527,273 - +0.2 527,273 - +0.8 527,419 + Atu5533 0.12 -1.2 527,424 + Atu5533 0.12 -1.4 527,514 - Atu5533 0.20 +0.1 527,528 - Atu5533 0.21 -0.4 527,676 - Atu5533 0.34 +0.2 527,682 - Atu5533 0.35 -0.6 527,767 + Atu5533 0.42 +0.5 527,785 - Atu5533 0.44 +0.6 527,808 - Atu5533 0.46 -0.0 527,832 + Atu5533 0.48 -0.3 527,893 + Atu5533 0.54 +1.0 527,901 - Atu5533 0.54 +0.3 527,908 + Atu5533 0.55 -1.5 527,930 + Atu5533 0.57 +0.0 527,999 - Atu5533 0.63 +0.3 527,999 - Atu5533 0.63 +0.8 527,999 - Atu5533 0.63 +1.5 528,024 - Atu5533 0.65 +0.1 528,047 - Atu5533 0.67 +3.8 528,094 - Atu5533 0.71 -0.3 528,100 + Atu5533 0.72 +2.4 528,163 - Atu5533 0.77 +0.2 528,163 - Atu5533 0.77 -0.8 528,165 + Atu5533 0.77 +0.6 528,210 + Atu5533 0.81 +0.8 528,210 + Atu5533 0.81 +1.2 528,218 - Atu5533 0.82 +0.9 528,218 - Atu5533 0.82 +2.0 528,237 - Atu5533 0.84 +0.7 528,263 + Atu5533 0.86 +0.2
Or see this region's nucleotide sequence