Strain Fitness in Agrobacterium fabrum C58 around Atu5526

Experiment: L-Ornithine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5525 and Atu5526 are separated by 108 nucleotidesAtu5526 and Atu5527 are separated by 22 nucleotides Atu5525: Atu5525 - ABC transporter nucleotide binding/ATPase (branched chain amino acid), at 517,109 to 518,026 Atu5525 Atu5526: Atu5526 - monooxygenase, at 518,135 to 519,238 Atu5526 Atu5527: Atu5527 - NADH-dependent FMN reductase, at 519,261 to 519,863 Atu5527 Position (kb) 518 519 520Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 517.199 kb on - strandat 517.228 kb on + strand, within Atu5525at 517.228 kb on + strand, within Atu5525at 517.247 kb on + strand, within Atu5525at 517.258 kb on + strand, within Atu5525at 517.258 kb on + strand, within Atu5525at 517.266 kb on - strand, within Atu5525at 517.269 kb on + strand, within Atu5525at 517.287 kb on - strand, within Atu5525at 517.337 kb on - strand, within Atu5525at 517.390 kb on + strand, within Atu5525at 517.390 kb on + strand, within Atu5525at 517.422 kb on - strand, within Atu5525at 517.434 kb on + strand, within Atu5525at 517.442 kb on - strand, within Atu5525at 517.581 kb on + strand, within Atu5525at 517.581 kb on + strand, within Atu5525at 517.581 kb on + strand, within Atu5525at 517.589 kb on - strand, within Atu5525at 517.623 kb on + strand, within Atu5525at 517.623 kb on + strand, within Atu5525at 517.623 kb on + strand, within Atu5525at 517.623 kb on + strand, within Atu5525at 517.623 kb on + strand, within Atu5525at 517.623 kb on + strand, within Atu5525at 517.631 kb on - strand, within Atu5525at 517.631 kb on - strand, within Atu5525at 517.631 kb on - strand, within Atu5525at 517.631 kb on - strand, within Atu5525at 517.631 kb on - strand, within Atu5525at 517.631 kb on - strand, within Atu5525at 517.631 kb on - strand, within Atu5525at 517.641 kb on - strand, within Atu5525at 517.791 kb on - strand, within Atu5525at 517.835 kb on + strand, within Atu5525at 517.835 kb on + strand, within Atu5525at 517.843 kb on - strand, within Atu5525at 517.882 kb on + strand, within Atu5525at 517.882 kb on + strand, within Atu5525at 517.910 kb on - strand, within Atu5525at 517.919 kb on + strand, within Atu5525at 518.112 kb on - strandat 518.160 kb on + strandat 518.240 kb on + strandat 518.240 kb on + strandat 518.248 kb on - strand, within Atu5526at 518.248 kb on - strand, within Atu5526at 518.270 kb on + strand, within Atu5526at 518.307 kb on + strand, within Atu5526at 518.317 kb on + strand, within Atu5526at 518.320 kb on - strand, within Atu5526at 518.320 kb on - strand, within Atu5526at 518.325 kb on - strand, within Atu5526at 518.430 kb on + strand, within Atu5526at 518.438 kb on - strand, within Atu5526at 518.478 kb on + strand, within Atu5526at 518.486 kb on - strand, within Atu5526at 518.486 kb on - strand, within Atu5526at 518.518 kb on - strand, within Atu5526at 518.536 kb on - strand, within Atu5526at 518.536 kb on - strand, within Atu5526at 518.550 kb on + strand, within Atu5526at 518.567 kb on + strand, within Atu5526at 518.585 kb on + strand, within Atu5526at 518.593 kb on + strand, within Atu5526at 518.601 kb on - strand, within Atu5526at 518.601 kb on - strand, within Atu5526at 518.653 kb on - strand, within Atu5526at 518.694 kb on - strand, within Atu5526at 518.709 kb on - strand, within Atu5526at 518.709 kb on - strand, within Atu5526at 518.805 kb on + strand, within Atu5526at 518.805 kb on - strand, within Atu5526at 518.834 kb on + strand, within Atu5526at 518.909 kb on - strand, within Atu5526at 518.937 kb on - strand, within Atu5526at 518.964 kb on - strand, within Atu5526at 518.973 kb on + strand, within Atu5526at 518.973 kb on - strand, within Atu5526at 519.068 kb on + strand, within Atu5526at 519.125 kb on + strand, within Atu5526at 519.260 kb on - strandat 519.384 kb on - strand, within Atu5527at 519.396 kb on - strand, within Atu5527at 519.426 kb on + strand, within Atu5527at 519.433 kb on + strand, within Atu5527at 519.454 kb on - strand, within Atu5527at 519.473 kb on - strand, within Atu5527at 519.483 kb on - strand, within Atu5527at 519.499 kb on + strand, within Atu5527at 519.501 kb on + strand, within Atu5527at 519.509 kb on + strand, within Atu5527at 519.554 kb on - strand, within Atu5527at 519.659 kb on + strand, within Atu5527at 519.702 kb on - strand, within Atu5527at 519.703 kb on + strand, within Atu5527at 519.711 kb on - strand, within Atu5527at 519.711 kb on - strand, within Atu5527at 519.732 kb on - strand, within Atu5527at 519.743 kb on + strand, within Atu5527at 519.851 kb on + strandat 519.972 kb on + strandat 519.980 kb on - strandat 519.996 kb on - strandat 520.053 kb on + strandat 520.061 kb on - strandat 520.079 kb on + strandat 520.087 kb on - strandat 520.087 kb on - strandat 520.087 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
remove
517,199 - +0.1
517,228 + Atu5525 0.13 -0.0
517,228 + Atu5525 0.13 +0.4
517,247 + Atu5525 0.15 +1.3
517,258 + Atu5525 0.16 -0.6
517,258 + Atu5525 0.16 +0.5
517,266 - Atu5525 0.17 +0.6
517,269 + Atu5525 0.17 +0.7
517,287 - Atu5525 0.19 -0.4
517,337 - Atu5525 0.25 +0.0
517,390 + Atu5525 0.31 -0.5
517,390 + Atu5525 0.31 -0.2
517,422 - Atu5525 0.34 +0.1
517,434 + Atu5525 0.35 -0.5
517,442 - Atu5525 0.36 +0.6
517,581 + Atu5525 0.51 +0.0
517,581 + Atu5525 0.51 -0.1
517,581 + Atu5525 0.51 +0.5
517,589 - Atu5525 0.52 -0.2
517,623 + Atu5525 0.56 +0.6
517,623 + Atu5525 0.56 -1.4
517,623 + Atu5525 0.56 +1.2
517,623 + Atu5525 0.56 -0.5
517,623 + Atu5525 0.56 +0.5
517,623 + Atu5525 0.56 -0.3
517,631 - Atu5525 0.57 +0.9
517,631 - Atu5525 0.57 +0.6
517,631 - Atu5525 0.57 -0.3
517,631 - Atu5525 0.57 +0.8
517,631 - Atu5525 0.57 +2.8
517,631 - Atu5525 0.57 +0.6
517,631 - Atu5525 0.57 -0.5
517,641 - Atu5525 0.58 +0.4
517,791 - Atu5525 0.74 +0.3
517,835 + Atu5525 0.79 +0.2
517,835 + Atu5525 0.79 +1.4
517,843 - Atu5525 0.80 +0.0
517,882 + Atu5525 0.84 -0.4
517,882 + Atu5525 0.84 +1.1
517,910 - Atu5525 0.87 +1.5
517,919 + Atu5525 0.88 +0.9
518,112 - +4.8
518,160 + +0.7
518,240 + -0.6
518,240 + +0.2
518,248 - Atu5526 0.10 +0.9
518,248 - Atu5526 0.10 -1.4
518,270 + Atu5526 0.12 +1.7
518,307 + Atu5526 0.16 -2.5
518,317 + Atu5526 0.16 +1.4
518,320 - Atu5526 0.17 +1.4
518,320 - Atu5526 0.17 -0.1
518,325 - Atu5526 0.17 +1.3
518,430 + Atu5526 0.27 -0.2
518,438 - Atu5526 0.27 +0.8
518,478 + Atu5526 0.31 +0.3
518,486 - Atu5526 0.32 +0.2
518,486 - Atu5526 0.32 +1.6
518,518 - Atu5526 0.35 +0.5
518,536 - Atu5526 0.36 +1.9
518,536 - Atu5526 0.36 -1.3
518,550 + Atu5526 0.38 +0.1
518,567 + Atu5526 0.39 -0.2
518,585 + Atu5526 0.41 +0.5
518,593 + Atu5526 0.41 +0.1
518,601 - Atu5526 0.42 -0.2
518,601 - Atu5526 0.42 -0.5
518,653 - Atu5526 0.47 +0.2
518,694 - Atu5526 0.51 +0.7
518,709 - Atu5526 0.52 +0.6
518,709 - Atu5526 0.52 +0.0
518,805 + Atu5526 0.61 +0.2
518,805 - Atu5526 0.61 +0.5
518,834 + Atu5526 0.63 -0.0
518,909 - Atu5526 0.70 +0.2
518,937 - Atu5526 0.73 +0.6
518,964 - Atu5526 0.75 +1.0
518,973 + Atu5526 0.76 +1.2
518,973 - Atu5526 0.76 -0.5
519,068 + Atu5526 0.85 +0.6
519,125 + Atu5526 0.90 +1.0
519,260 - +2.2
519,384 - Atu5527 0.20 -1.9
519,396 - Atu5527 0.22 +0.6
519,426 + Atu5527 0.27 -0.0
519,433 + Atu5527 0.29 +0.8
519,454 - Atu5527 0.32 -0.0
519,473 - Atu5527 0.35 +1.0
519,483 - Atu5527 0.37 -0.7
519,499 + Atu5527 0.39 -0.3
519,501 + Atu5527 0.40 -0.3
519,509 + Atu5527 0.41 -0.6
519,554 - Atu5527 0.49 +0.1
519,659 + Atu5527 0.66 +0.2
519,702 - Atu5527 0.73 -1.0
519,703 + Atu5527 0.73 -1.5
519,711 - Atu5527 0.75 -0.2
519,711 - Atu5527 0.75 -0.4
519,732 - Atu5527 0.78 +0.8
519,743 + Atu5527 0.80 +0.2
519,851 + +1.1
519,972 + -1.8
519,980 - -1.7
519,996 - -0.0
520,053 + +0.0
520,061 - -1.4
520,079 + +1.4
520,087 - -0.1
520,087 - +0.1
520,087 - +1.0

Or see this region's nucleotide sequence