Strain Fitness in Agrobacterium fabrum C58 around Atu5068

Experiment: L-Ornithine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5067 and Atu5068 are separated by 22 nucleotidesAtu5068 and Atu5069 overlap by 8 nucleotidesAtu5069 and Atu5070 are separated by 14 nucleotides Atu5067: Atu5067 - dihydrodipicolinate synthase, at 65,432 to 66,325 Atu5067 Atu5068: Atu5068 - ABC transporter nucleotide binding/ATPase (oligopeptide), at 66,348 to 67,967 Atu5068 Atu5069: Atu5069 - ABC transporter membrane spanning protein (oligopeptide), at 67,960 to 68,907 Atu5069 Atu5070: Atu5070 - ABC transporter membrane spanning protein (oligopeptide), at 68,922 to 69,836 Atu5070 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.389 kb on + strandat 65.427 kb on - strandat 65.512 kb on - strandat 65.567 kb on - strand, within Atu5067at 65.570 kb on + strand, within Atu5067at 65.582 kb on + strand, within Atu5067at 65.611 kb on - strand, within Atu5067at 65.624 kb on + strand, within Atu5067at 65.656 kb on + strand, within Atu5067at 65.658 kb on - strand, within Atu5067at 65.697 kb on + strand, within Atu5067at 65.740 kb on - strand, within Atu5067at 65.769 kb on + strand, within Atu5067at 65.772 kb on - strand, within Atu5067at 65.825 kb on + strand, within Atu5067at 65.870 kb on + strand, within Atu5067at 65.905 kb on + strand, within Atu5067at 65.928 kb on - strand, within Atu5067at 65.942 kb on - strand, within Atu5067at 65.954 kb on - strand, within Atu5067at 65.965 kb on + strand, within Atu5067at 65.973 kb on - strand, within Atu5067at 66.035 kb on - strand, within Atu5067at 66.050 kb on + strand, within Atu5067at 66.076 kb on + strand, within Atu5067at 66.092 kb on - strand, within Atu5067at 66.176 kb on - strand, within Atu5067at 66.226 kb on - strand, within Atu5067at 66.283 kb on + strandat 66.293 kb on + strandat 66.293 kb on + strandat 66.326 kb on + strandat 66.328 kb on + strandat 66.328 kb on + strandat 66.371 kb on + strandat 66.401 kb on - strandat 66.403 kb on + strandat 66.412 kb on - strandat 66.420 kb on + strandat 66.428 kb on - strandat 66.441 kb on - strandat 66.449 kb on - strandat 66.451 kb on - strandat 66.453 kb on + strandat 66.505 kb on + strandat 66.542 kb on + strand, within Atu5068at 66.542 kb on + strand, within Atu5068at 66.542 kb on + strand, within Atu5068at 66.550 kb on - strand, within Atu5068at 66.550 kb on - strand, within Atu5068at 66.550 kb on - strand, within Atu5068at 66.589 kb on + strand, within Atu5068at 66.620 kb on - strand, within Atu5068at 66.655 kb on - strand, within Atu5068at 66.676 kb on - strand, within Atu5068at 66.694 kb on + strand, within Atu5068at 66.694 kb on + strand, within Atu5068at 66.710 kb on + strand, within Atu5068at 66.757 kb on + strand, within Atu5068at 66.856 kb on + strand, within Atu5068at 66.953 kb on + strand, within Atu5068at 66.954 kb on + strand, within Atu5068at 66.962 kb on - strand, within Atu5068at 67.128 kb on + strand, within Atu5068at 67.158 kb on + strand, within Atu5068at 67.165 kb on + strand, within Atu5068at 67.167 kb on - strand, within Atu5068at 67.167 kb on - strand, within Atu5068at 67.173 kb on + strand, within Atu5068at 67.221 kb on - strand, within Atu5068at 67.330 kb on - strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.377 kb on - strand, within Atu5068at 67.377 kb on - strand, within Atu5068at 67.396 kb on - strand, within Atu5068at 67.410 kb on - strand, within Atu5068at 67.528 kb on + strand, within Atu5068at 67.560 kb on - strand, within Atu5068at 67.570 kb on + strand, within Atu5068at 67.570 kb on + strand, within Atu5068at 67.578 kb on - strand, within Atu5068at 67.583 kb on - strand, within Atu5068at 67.633 kb on - strand, within Atu5068at 67.648 kb on + strand, within Atu5068at 67.656 kb on - strand, within Atu5068at 67.695 kb on + strand, within Atu5068at 67.703 kb on - strand, within Atu5068at 67.749 kb on + strand, within Atu5068at 67.762 kb on - strand, within Atu5068at 67.820 kb on - strandat 67.826 kb on + strandat 67.834 kb on - strandat 67.878 kb on + strandat 67.897 kb on + strandat 67.905 kb on - strandat 68.004 kb on - strandat 68.004 kb on - strandat 68.006 kb on - strandat 68.009 kb on - strandat 68.009 kb on - strandat 68.009 kb on - strandat 68.009 kb on - strandat 68.009 kb on - strandat 68.154 kb on - strand, within Atu5069at 68.187 kb on - strand, within Atu5069at 68.224 kb on + strand, within Atu5069at 68.242 kb on + strand, within Atu5069at 68.364 kb on - strand, within Atu5069at 68.404 kb on + strand, within Atu5069at 68.539 kb on - strand, within Atu5069at 68.539 kb on - strand, within Atu5069at 68.551 kb on - strand, within Atu5069at 68.571 kb on + strand, within Atu5069at 68.645 kb on + strand, within Atu5069at 68.736 kb on + strand, within Atu5069at 68.736 kb on + strand, within Atu5069at 68.736 kb on + strand, within Atu5069at 68.736 kb on + strand, within Atu5069at 68.739 kb on - strand, within Atu5069at 68.744 kb on - strand, within Atu5069at 68.744 kb on - strand, within Atu5069at 68.744 kb on - strand, within Atu5069at 68.744 kb on - strand, within Atu5069at 68.807 kb on + strand, within Atu5069at 68.885 kb on + strandat 68.885 kb on + strandat 68.893 kb on - strandat 68.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
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65,389 + +0.1
65,427 - +0.1
65,512 - -0.9
65,567 - Atu5067 0.15 -0.4
65,570 + Atu5067 0.15 -0.0
65,582 + Atu5067 0.17 -0.1
65,611 - Atu5067 0.20 -0.0
65,624 + Atu5067 0.21 +2.2
65,656 + Atu5067 0.25 +0.7
65,658 - Atu5067 0.25 -0.2
65,697 + Atu5067 0.30 +1.4
65,740 - Atu5067 0.34 +0.7
65,769 + Atu5067 0.38 +1.3
65,772 - Atu5067 0.38 -2.1
65,825 + Atu5067 0.44 +0.1
65,870 + Atu5067 0.49 +0.2
65,905 + Atu5067 0.53 +2.2
65,928 - Atu5067 0.55 -0.6
65,942 - Atu5067 0.57 -1.4
65,954 - Atu5067 0.58 +0.3
65,965 + Atu5067 0.60 +0.7
65,973 - Atu5067 0.61 +0.8
66,035 - Atu5067 0.67 -0.4
66,050 + Atu5067 0.69 +1.5
66,076 + Atu5067 0.72 -0.4
66,092 - Atu5067 0.74 -0.5
66,176 - Atu5067 0.83 +0.6
66,226 - Atu5067 0.89 -0.0
66,283 + -0.7
66,293 + +0.5
66,293 + -0.2
66,326 + +0.8
66,328 + +0.3
66,328 + +1.2
66,371 + +0.1
66,401 - -0.0
66,403 + -0.3
66,412 - +0.7
66,420 + -0.1
66,428 - +0.4
66,441 - +1.6
66,449 - +2.1
66,451 - +0.3
66,453 + +1.4
66,505 + -0.1
66,542 + Atu5068 0.12 -1.0
66,542 + Atu5068 0.12 +2.2
66,542 + Atu5068 0.12 +0.3
66,550 - Atu5068 0.12 +1.5
66,550 - Atu5068 0.12 +0.9
66,550 - Atu5068 0.12 +1.4
66,589 + Atu5068 0.15 +0.2
66,620 - Atu5068 0.17 -0.2
66,655 - Atu5068 0.19 +1.0
66,676 - Atu5068 0.20 +0.3
66,694 + Atu5068 0.21 +1.0
66,694 + Atu5068 0.21 +0.4
66,710 + Atu5068 0.22 +2.2
66,757 + Atu5068 0.25 -0.3
66,856 + Atu5068 0.31 +0.5
66,953 + Atu5068 0.37 -0.6
66,954 + Atu5068 0.37 -1.0
66,962 - Atu5068 0.38 -1.7
67,128 + Atu5068 0.48 -0.1
67,158 + Atu5068 0.50 +2.2
67,165 + Atu5068 0.50 -0.0
67,167 - Atu5068 0.51 -1.9
67,167 - Atu5068 0.51 +0.2
67,173 + Atu5068 0.51 -0.1
67,221 - Atu5068 0.54 -0.2
67,330 - Atu5068 0.61 +1.0
67,369 + Atu5068 0.63 -0.9
67,369 + Atu5068 0.63 -0.8
67,369 + Atu5068 0.63 +0.5
67,369 + Atu5068 0.63 +0.8
67,369 + Atu5068 0.63 +1.3
67,377 - Atu5068 0.64 -0.7
67,377 - Atu5068 0.64 -0.5
67,396 - Atu5068 0.65 +2.2
67,410 - Atu5068 0.66 -0.6
67,528 + Atu5068 0.73 +0.0
67,560 - Atu5068 0.75 -0.1
67,570 + Atu5068 0.75 +0.3
67,570 + Atu5068 0.75 -0.1
67,578 - Atu5068 0.76 -0.2
67,583 - Atu5068 0.76 -0.1
67,633 - Atu5068 0.79 -0.1
67,648 + Atu5068 0.80 +0.3
67,656 - Atu5068 0.81 -0.1
67,695 + Atu5068 0.83 -0.2
67,703 - Atu5068 0.84 -0.4
67,749 + Atu5068 0.86 -0.2
67,762 - Atu5068 0.87 -0.7
67,820 - +0.3
67,826 + +0.5
67,834 - +0.8
67,878 + -0.8
67,897 + +0.9
67,905 - -0.3
68,004 - -0.2
68,004 - -0.6
68,006 - -1.2
68,009 - +0.6
68,009 - +0.2
68,009 - -0.2
68,009 - +0.4
68,009 - +0.4
68,154 - Atu5069 0.20 +0.3
68,187 - Atu5069 0.24 +0.1
68,224 + Atu5069 0.28 +2.2
68,242 + Atu5069 0.30 +0.9
68,364 - Atu5069 0.43 -0.5
68,404 + Atu5069 0.47 +0.3
68,539 - Atu5069 0.61 +0.5
68,539 - Atu5069 0.61 -1.0
68,551 - Atu5069 0.62 +1.2
68,571 + Atu5069 0.64 +1.6
68,645 + Atu5069 0.72 -1.6
68,736 + Atu5069 0.82 +0.8
68,736 + Atu5069 0.82 +2.2
68,736 + Atu5069 0.82 +0.1
68,736 + Atu5069 0.82 +0.4
68,739 - Atu5069 0.82 -0.2
68,744 - Atu5069 0.83 -0.1
68,744 - Atu5069 0.83 -1.6
68,744 - Atu5069 0.83 -1.2
68,744 - Atu5069 0.83 +1.4
68,807 + Atu5069 0.89 -0.3
68,885 + +0.2
68,885 + -0.4
68,893 - -0.8
68,950 + +0.2

Or see this region's nucleotide sequence