Experiment: L-Ornithine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4017 and Atu4018 are separated by 54 nucleotides Atu4018 and Atu4019 are separated by 21 nucleotides Atu4019 and Atu4020 are separated by 66 nucleotides
Atu4017: Atu4017 - MFS permease, at 1,128,726 to 1,130,057
Atu4017
Atu4018: Atu4018 - two component sensor kinase, at 1,130,112 to 1,131,449
Atu4018
Atu4019: Atu4019 - two component response regulator, at 1,131,471 to 1,132,124
Atu4019
Atu4020: Atu4020 - hypothetical protein, at 1,132,191 to 1,133,837
Atu4020
Position (kb)
1130
1131
1132 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1129.297 kb on + strand, within Atu4017 at 1129.434 kb on - strand, within Atu4017 at 1129.450 kb on + strand, within Atu4017 at 1129.450 kb on + strand, within Atu4017 at 1129.468 kb on - strand, within Atu4017 at 1129.606 kb on + strand, within Atu4017 at 1129.608 kb on + strand, within Atu4017 at 1129.653 kb on + strand, within Atu4017 at 1129.671 kb on - strand, within Atu4017 at 1129.710 kb on + strand, within Atu4017 at 1129.723 kb on - strand, within Atu4017 at 1129.724 kb on + strand, within Atu4017 at 1129.755 kb on - strand, within Atu4017 at 1129.773 kb on - strand, within Atu4017 at 1129.775 kb on + strand, within Atu4017 at 1129.778 kb on - strand, within Atu4017 at 1129.803 kb on + strand, within Atu4017 at 1129.811 kb on - strand, within Atu4017 at 1129.849 kb on + strand, within Atu4017 at 1129.872 kb on + strand, within Atu4017 at 1129.873 kb on - strand, within Atu4017 at 1129.879 kb on + strand, within Atu4017 at 1129.880 kb on - strand, within Atu4017 at 1129.880 kb on - strand, within Atu4017 at 1129.880 kb on - strand, within Atu4017 at 1129.880 kb on - strand, within Atu4017 at 1129.880 kb on - strand, within Atu4017 at 1129.880 kb on - strand, within Atu4017 at 1129.880 kb on - strand, within Atu4017 at 1129.885 kb on - strand, within Atu4017 at 1130.060 kb on - strand at 1130.060 kb on - strand at 1130.060 kb on - strand at 1130.127 kb on - strand at 1130.152 kb on - strand at 1130.268 kb on + strand, within Atu4018 at 1130.269 kb on - strand, within Atu4018 at 1130.312 kb on - strand, within Atu4018 at 1130.484 kb on + strand, within Atu4018 at 1130.514 kb on - strand, within Atu4018 at 1130.539 kb on - strand, within Atu4018 at 1130.625 kb on - strand, within Atu4018 at 1130.695 kb on + strand, within Atu4018 at 1130.701 kb on - strand, within Atu4018 at 1130.743 kb on - strand, within Atu4018 at 1130.748 kb on + strand, within Atu4018 at 1130.831 kb on - strand, within Atu4018 at 1130.839 kb on - strand, within Atu4018 at 1130.914 kb on + strand, within Atu4018 at 1130.914 kb on + strand, within Atu4018 at 1130.922 kb on - strand, within Atu4018 at 1130.922 kb on - strand, within Atu4018 at 1130.922 kb on - strand, within Atu4018 at 1130.987 kb on - strand, within Atu4018 at 1130.992 kb on - strand, within Atu4018 at 1131.120 kb on + strand, within Atu4018 at 1131.198 kb on + strand, within Atu4018 at 1131.379 kb on + strand at 1131.384 kb on + strand at 1131.384 kb on + strand at 1131.444 kb on + strand at 1131.510 kb on - strand at 1131.671 kb on + strand, within Atu4019 at 1131.677 kb on + strand, within Atu4019 at 1131.691 kb on - strand, within Atu4019 at 1131.828 kb on - strand, within Atu4019 at 1131.828 kb on - strand, within Atu4019 at 1131.842 kb on - strand, within Atu4019 at 1131.939 kb on - strand, within Atu4019 at 1131.950 kb on - strand, within Atu4019 at 1131.965 kb on + strand, within Atu4019 at 1131.980 kb on + strand, within Atu4019 at 1131.980 kb on + strand, within Atu4019 at 1131.986 kb on + strand, within Atu4019 at 1131.986 kb on + strand, within Atu4019 at 1131.994 kb on - strand, within Atu4019 at 1131.994 kb on - strand, within Atu4019 at 1132.041 kb on + strand, within Atu4019 at 1132.085 kb on - strand at 1132.137 kb on - strand at 1132.173 kb on + strand at 1132.184 kb on + strand at 1132.189 kb on + strand at 1132.283 kb on + strand at 1132.354 kb on - strand at 1132.414 kb on - strand, within Atu4020 at 1132.439 kb on + strand, within Atu4020 at 1132.439 kb on + strand, within Atu4020
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine (N) remove 1,129,297 + Atu4017 0.43 -0.4 1,129,434 - Atu4017 0.53 -1.5 1,129,450 + Atu4017 0.54 -0.3 1,129,450 + Atu4017 0.54 -0.4 1,129,468 - Atu4017 0.56 -0.2 1,129,606 + Atu4017 0.66 +0.1 1,129,608 + Atu4017 0.66 +0.8 1,129,653 + Atu4017 0.70 -0.0 1,129,671 - Atu4017 0.71 -1.0 1,129,710 + Atu4017 0.74 -1.7 1,129,723 - Atu4017 0.75 -0.1 1,129,724 + Atu4017 0.75 -0.8 1,129,755 - Atu4017 0.77 -0.8 1,129,773 - Atu4017 0.79 -0.2 1,129,775 + Atu4017 0.79 -0.3 1,129,778 - Atu4017 0.79 -0.4 1,129,803 + Atu4017 0.81 +0.0 1,129,811 - Atu4017 0.81 +0.5 1,129,849 + Atu4017 0.84 -1.0 1,129,872 + Atu4017 0.86 -0.6 1,129,873 - Atu4017 0.86 -1.2 1,129,879 + Atu4017 0.87 -0.5 1,129,880 - Atu4017 0.87 +0.0 1,129,880 - Atu4017 0.87 -0.1 1,129,880 - Atu4017 0.87 -0.5 1,129,880 - Atu4017 0.87 +0.0 1,129,880 - Atu4017 0.87 -1.0 1,129,880 - Atu4017 0.87 +1.3 1,129,880 - Atu4017 0.87 -0.2 1,129,885 - Atu4017 0.87 -0.2 1,130,060 - -0.1 1,130,060 - +0.1 1,130,060 - -0.4 1,130,127 - -1.5 1,130,152 - +0.6 1,130,268 + Atu4018 0.12 -0.6 1,130,269 - Atu4018 0.12 -0.9 1,130,312 - Atu4018 0.15 -0.1 1,130,484 + Atu4018 0.28 -0.1 1,130,514 - Atu4018 0.30 -1.3 1,130,539 - Atu4018 0.32 -0.7 1,130,625 - Atu4018 0.38 -1.1 1,130,695 + Atu4018 0.44 -1.3 1,130,701 - Atu4018 0.44 -0.2 1,130,743 - Atu4018 0.47 -0.4 1,130,748 + Atu4018 0.48 -0.2 1,130,831 - Atu4018 0.54 -0.8 1,130,839 - Atu4018 0.54 -0.4 1,130,914 + Atu4018 0.60 -0.2 1,130,914 + Atu4018 0.60 -1.2 1,130,922 - Atu4018 0.61 -0.7 1,130,922 - Atu4018 0.61 -1.1 1,130,922 - Atu4018 0.61 -0.7 1,130,987 - Atu4018 0.65 -0.3 1,130,992 - Atu4018 0.66 -0.5 1,131,120 + Atu4018 0.75 -0.0 1,131,198 + Atu4018 0.81 -2.3 1,131,379 + -1.2 1,131,384 + +0.5 1,131,384 + -0.3 1,131,444 + +0.7 1,131,510 - -0.8 1,131,671 + Atu4019 0.31 +0.2 1,131,677 + Atu4019 0.31 -0.6 1,131,691 - Atu4019 0.34 -0.6 1,131,828 - Atu4019 0.55 -0.3 1,131,828 - Atu4019 0.55 -0.2 1,131,842 - Atu4019 0.57 -0.1 1,131,939 - Atu4019 0.72 +1.2 1,131,950 - Atu4019 0.73 -0.3 1,131,965 + Atu4019 0.76 -0.2 1,131,980 + Atu4019 0.78 -0.2 1,131,980 + Atu4019 0.78 -0.7 1,131,986 + Atu4019 0.79 -0.6 1,131,986 + Atu4019 0.79 -0.6 1,131,994 - Atu4019 0.80 +0.0 1,131,994 - Atu4019 0.80 -0.7 1,132,041 + Atu4019 0.87 +0.3 1,132,085 - -1.0 1,132,137 - +0.2 1,132,173 + +2.6 1,132,184 + -0.2 1,132,189 + -0.9 1,132,283 + -0.0 1,132,354 - -0.2 1,132,414 - Atu4020 0.14 -0.4 1,132,439 + Atu4020 0.15 -0.4 1,132,439 + Atu4020 0.15 +0.2
Or see this region's nucleotide sequence