Strain Fitness in Agrobacterium fabrum C58 around Atu4018

Experiment: L-Ornithine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu4017 and Atu4018 are separated by 54 nucleotidesAtu4018 and Atu4019 are separated by 21 nucleotidesAtu4019 and Atu4020 are separated by 66 nucleotides Atu4017: Atu4017 - MFS permease, at 1,128,726 to 1,130,057 Atu4017 Atu4018: Atu4018 - two component sensor kinase, at 1,130,112 to 1,131,449 Atu4018 Atu4019: Atu4019 - two component response regulator, at 1,131,471 to 1,132,124 Atu4019 Atu4020: Atu4020 - hypothetical protein, at 1,132,191 to 1,133,837 Atu4020 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -2 -1 0 1 2at 1129.297 kb on + strand, within Atu4017at 1129.434 kb on - strand, within Atu4017at 1129.450 kb on + strand, within Atu4017at 1129.450 kb on + strand, within Atu4017at 1129.468 kb on - strand, within Atu4017at 1129.606 kb on + strand, within Atu4017at 1129.608 kb on + strand, within Atu4017at 1129.653 kb on + strand, within Atu4017at 1129.671 kb on - strand, within Atu4017at 1129.710 kb on + strand, within Atu4017at 1129.723 kb on - strand, within Atu4017at 1129.724 kb on + strand, within Atu4017at 1129.755 kb on - strand, within Atu4017at 1129.773 kb on - strand, within Atu4017at 1129.775 kb on + strand, within Atu4017at 1129.778 kb on - strand, within Atu4017at 1129.803 kb on + strand, within Atu4017at 1129.811 kb on - strand, within Atu4017at 1129.849 kb on + strand, within Atu4017at 1129.872 kb on + strand, within Atu4017at 1129.873 kb on - strand, within Atu4017at 1129.879 kb on + strand, within Atu4017at 1129.880 kb on - strand, within Atu4017at 1129.880 kb on - strand, within Atu4017at 1129.880 kb on - strand, within Atu4017at 1129.880 kb on - strand, within Atu4017at 1129.880 kb on - strand, within Atu4017at 1129.880 kb on - strand, within Atu4017at 1129.880 kb on - strand, within Atu4017at 1129.885 kb on - strand, within Atu4017at 1130.060 kb on - strandat 1130.060 kb on - strandat 1130.060 kb on - strandat 1130.127 kb on - strandat 1130.152 kb on - strandat 1130.268 kb on + strand, within Atu4018at 1130.269 kb on - strand, within Atu4018at 1130.312 kb on - strand, within Atu4018at 1130.484 kb on + strand, within Atu4018at 1130.514 kb on - strand, within Atu4018at 1130.539 kb on - strand, within Atu4018at 1130.625 kb on - strand, within Atu4018at 1130.695 kb on + strand, within Atu4018at 1130.701 kb on - strand, within Atu4018at 1130.743 kb on - strand, within Atu4018at 1130.748 kb on + strand, within Atu4018at 1130.831 kb on - strand, within Atu4018at 1130.839 kb on - strand, within Atu4018at 1130.914 kb on + strand, within Atu4018at 1130.914 kb on + strand, within Atu4018at 1130.922 kb on - strand, within Atu4018at 1130.922 kb on - strand, within Atu4018at 1130.922 kb on - strand, within Atu4018at 1130.987 kb on - strand, within Atu4018at 1130.992 kb on - strand, within Atu4018at 1131.120 kb on + strand, within Atu4018at 1131.198 kb on + strand, within Atu4018at 1131.379 kb on + strandat 1131.384 kb on + strandat 1131.384 kb on + strandat 1131.444 kb on + strandat 1131.510 kb on - strandat 1131.671 kb on + strand, within Atu4019at 1131.677 kb on + strand, within Atu4019at 1131.691 kb on - strand, within Atu4019at 1131.828 kb on - strand, within Atu4019at 1131.828 kb on - strand, within Atu4019at 1131.842 kb on - strand, within Atu4019at 1131.939 kb on - strand, within Atu4019at 1131.950 kb on - strand, within Atu4019at 1131.965 kb on + strand, within Atu4019at 1131.980 kb on + strand, within Atu4019at 1131.980 kb on + strand, within Atu4019at 1131.986 kb on + strand, within Atu4019at 1131.986 kb on + strand, within Atu4019at 1131.994 kb on - strand, within Atu4019at 1131.994 kb on - strand, within Atu4019at 1132.041 kb on + strand, within Atu4019at 1132.085 kb on - strandat 1132.137 kb on - strandat 1132.173 kb on + strandat 1132.184 kb on + strandat 1132.189 kb on + strandat 1132.283 kb on + strandat 1132.354 kb on - strandat 1132.414 kb on - strand, within Atu4020at 1132.439 kb on + strand, within Atu4020at 1132.439 kb on + strand, within Atu4020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
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1,129,297 + Atu4017 0.43 -0.4
1,129,434 - Atu4017 0.53 -1.5
1,129,450 + Atu4017 0.54 -0.3
1,129,450 + Atu4017 0.54 -0.4
1,129,468 - Atu4017 0.56 -0.2
1,129,606 + Atu4017 0.66 +0.1
1,129,608 + Atu4017 0.66 +0.8
1,129,653 + Atu4017 0.70 -0.0
1,129,671 - Atu4017 0.71 -1.0
1,129,710 + Atu4017 0.74 -1.7
1,129,723 - Atu4017 0.75 -0.1
1,129,724 + Atu4017 0.75 -0.8
1,129,755 - Atu4017 0.77 -0.8
1,129,773 - Atu4017 0.79 -0.2
1,129,775 + Atu4017 0.79 -0.3
1,129,778 - Atu4017 0.79 -0.4
1,129,803 + Atu4017 0.81 +0.0
1,129,811 - Atu4017 0.81 +0.5
1,129,849 + Atu4017 0.84 -1.0
1,129,872 + Atu4017 0.86 -0.6
1,129,873 - Atu4017 0.86 -1.2
1,129,879 + Atu4017 0.87 -0.5
1,129,880 - Atu4017 0.87 +0.0
1,129,880 - Atu4017 0.87 -0.1
1,129,880 - Atu4017 0.87 -0.5
1,129,880 - Atu4017 0.87 +0.0
1,129,880 - Atu4017 0.87 -1.0
1,129,880 - Atu4017 0.87 +1.3
1,129,880 - Atu4017 0.87 -0.2
1,129,885 - Atu4017 0.87 -0.2
1,130,060 - -0.1
1,130,060 - +0.1
1,130,060 - -0.4
1,130,127 - -1.5
1,130,152 - +0.6
1,130,268 + Atu4018 0.12 -0.6
1,130,269 - Atu4018 0.12 -0.9
1,130,312 - Atu4018 0.15 -0.1
1,130,484 + Atu4018 0.28 -0.1
1,130,514 - Atu4018 0.30 -1.3
1,130,539 - Atu4018 0.32 -0.7
1,130,625 - Atu4018 0.38 -1.1
1,130,695 + Atu4018 0.44 -1.3
1,130,701 - Atu4018 0.44 -0.2
1,130,743 - Atu4018 0.47 -0.4
1,130,748 + Atu4018 0.48 -0.2
1,130,831 - Atu4018 0.54 -0.8
1,130,839 - Atu4018 0.54 -0.4
1,130,914 + Atu4018 0.60 -0.2
1,130,914 + Atu4018 0.60 -1.2
1,130,922 - Atu4018 0.61 -0.7
1,130,922 - Atu4018 0.61 -1.1
1,130,922 - Atu4018 0.61 -0.7
1,130,987 - Atu4018 0.65 -0.3
1,130,992 - Atu4018 0.66 -0.5
1,131,120 + Atu4018 0.75 -0.0
1,131,198 + Atu4018 0.81 -2.3
1,131,379 + -1.2
1,131,384 + +0.5
1,131,384 + -0.3
1,131,444 + +0.7
1,131,510 - -0.8
1,131,671 + Atu4019 0.31 +0.2
1,131,677 + Atu4019 0.31 -0.6
1,131,691 - Atu4019 0.34 -0.6
1,131,828 - Atu4019 0.55 -0.3
1,131,828 - Atu4019 0.55 -0.2
1,131,842 - Atu4019 0.57 -0.1
1,131,939 - Atu4019 0.72 +1.2
1,131,950 - Atu4019 0.73 -0.3
1,131,965 + Atu4019 0.76 -0.2
1,131,980 + Atu4019 0.78 -0.2
1,131,980 + Atu4019 0.78 -0.7
1,131,986 + Atu4019 0.79 -0.6
1,131,986 + Atu4019 0.79 -0.6
1,131,994 - Atu4019 0.80 +0.0
1,131,994 - Atu4019 0.80 -0.7
1,132,041 + Atu4019 0.87 +0.3
1,132,085 - -1.0
1,132,137 - +0.2
1,132,173 + +2.6
1,132,184 + -0.2
1,132,189 + -0.9
1,132,283 + -0.0
1,132,354 - -0.2
1,132,414 - Atu4020 0.14 -0.4
1,132,439 + Atu4020 0.15 -0.4
1,132,439 + Atu4020 0.15 +0.2

Or see this region's nucleotide sequence