Strain Fitness in Agrobacterium fabrum C58 around Atu3675

Experiment: L-Ornithine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3673 and Atu3674 are separated by 72 nucleotidesAtu3674 and Atu3675 are separated by 45 nucleotidesAtu3675 and Atu3676 overlap by 4 nucleotidesAtu3676 and Atu3677 overlap by 4 nucleotides Atu3673: Atu3673 - siderophore biosynthesis protein, at 727,195 to 729,447 Atu3673 Atu3674: Atu3674 - hypothetical protein, at 729,520 to 729,723 Atu3674 Atu3675: Atu3675 - peptide synthetase, siderophore biosynthesis protein, at 729,769 to 734,331 Atu3675 Atu3676: Atu3676 - siderophore biosynthesis protein, at 734,328 to 735,224 Atu3676 Atu3677: Atu3677 - polyketide synthase, at 735,221 to 736,696 Atu3677 Position (kb) 729 730 731 732 733 734 735Strain fitness (log2 ratio) -3 -2 -1 0 1at 728.785 kb on - strand, within Atu3673at 728.838 kb on + strand, within Atu3673at 728.931 kb on + strand, within Atu3673at 728.939 kb on - strand, within Atu3673at 729.179 kb on - strand, within Atu3673at 729.289 kb on - strandat 729.319 kb on - strandat 729.321 kb on - strandat 729.380 kb on - strandat 729.581 kb on - strand, within Atu3674at 729.647 kb on - strand, within Atu3674at 729.694 kb on + strand, within Atu3674at 729.771 kb on + strandat 729.882 kb on - strandat 729.939 kb on + strandat 729.970 kb on - strandat 730.036 kb on - strandat 730.047 kb on + strandat 730.054 kb on - strandat 730.141 kb on + strandat 730.171 kb on + strandat 730.171 kb on + strandat 730.179 kb on - strandat 730.179 kb on - strandat 730.179 kb on - strandat 730.211 kb on - strandat 730.366 kb on - strand, within Atu3675at 730.373 kb on + strand, within Atu3675at 730.383 kb on + strand, within Atu3675at 730.397 kb on - strand, within Atu3675at 730.456 kb on - strand, within Atu3675at 730.456 kb on - strand, within Atu3675at 730.590 kb on + strand, within Atu3675at 730.633 kb on + strand, within Atu3675at 730.633 kb on + strand, within Atu3675at 730.641 kb on - strand, within Atu3675at 730.703 kb on - strand, within Atu3675at 730.703 kb on - strand, within Atu3675at 730.747 kb on + strand, within Atu3675at 730.748 kb on + strand, within Atu3675at 730.756 kb on - strand, within Atu3675at 730.775 kb on - strand, within Atu3675at 730.933 kb on - strand, within Atu3675at 731.186 kb on - strand, within Atu3675at 731.201 kb on - strand, within Atu3675at 731.265 kb on + strand, within Atu3675at 731.290 kb on - strand, within Atu3675at 731.305 kb on + strand, within Atu3675at 731.341 kb on + strand, within Atu3675at 731.379 kb on + strand, within Atu3675at 731.387 kb on - strand, within Atu3675at 731.397 kb on - strand, within Atu3675at 731.397 kb on - strand, within Atu3675at 731.576 kb on + strand, within Atu3675at 731.584 kb on - strand, within Atu3675at 731.586 kb on + strand, within Atu3675at 731.591 kb on + strand, within Atu3675at 731.600 kb on + strand, within Atu3675at 731.618 kb on + strand, within Atu3675at 731.626 kb on - strand, within Atu3675at 731.627 kb on + strand, within Atu3675at 731.627 kb on + strand, within Atu3675at 731.627 kb on + strand, within Atu3675at 731.635 kb on - strand, within Atu3675at 731.635 kb on - strand, within Atu3675at 731.635 kb on - strand, within Atu3675at 731.635 kb on - strand, within Atu3675at 731.711 kb on - strand, within Atu3675at 731.721 kb on + strand, within Atu3675at 731.730 kb on + strand, within Atu3675at 731.734 kb on - strand, within Atu3675at 731.736 kb on + strand, within Atu3675at 731.739 kb on + strand, within Atu3675at 731.813 kb on + strand, within Atu3675at 731.832 kb on + strand, within Atu3675at 731.840 kb on - strand, within Atu3675at 731.861 kb on + strand, within Atu3675at 731.873 kb on - strand, within Atu3675at 731.916 kb on - strand, within Atu3675at 731.975 kb on - strand, within Atu3675at 732.077 kb on + strand, within Atu3675at 732.080 kb on - strand, within Atu3675at 732.091 kb on + strand, within Atu3675at 732.146 kb on + strand, within Atu3675at 732.290 kb on - strand, within Atu3675at 732.306 kb on + strand, within Atu3675at 732.342 kb on - strand, within Atu3675at 732.508 kb on + strand, within Atu3675at 732.544 kb on + strand, within Atu3675at 732.544 kb on + strand, within Atu3675at 732.552 kb on - strand, within Atu3675at 732.605 kb on - strand, within Atu3675at 732.668 kb on + strand, within Atu3675at 732.715 kb on - strand, within Atu3675at 732.824 kb on + strand, within Atu3675at 732.927 kb on - strand, within Atu3675at 732.996 kb on - strand, within Atu3675at 733.139 kb on + strand, within Atu3675at 733.192 kb on - strand, within Atu3675at 733.283 kb on + strand, within Atu3675at 733.321 kb on + strand, within Atu3675at 733.328 kb on - strand, within Atu3675at 733.329 kb on - strand, within Atu3675at 733.370 kb on - strand, within Atu3675at 733.485 kb on - strand, within Atu3675at 733.488 kb on - strand, within Atu3675at 733.491 kb on + strand, within Atu3675at 733.514 kb on + strand, within Atu3675at 733.586 kb on + strand, within Atu3675at 733.640 kb on - strand, within Atu3675at 733.698 kb on + strand, within Atu3675at 733.801 kb on + strand, within Atu3675at 733.819 kb on - strand, within Atu3675at 733.837 kb on - strand, within Atu3675at 733.845 kb on + strand, within Atu3675at 733.847 kb on - strand, within Atu3675at 733.859 kb on - strand, within Atu3675at 733.864 kb on - strand, within Atu3675at 733.878 kb on - strandat 733.879 kb on - strandat 733.921 kb on + strandat 733.957 kb on + strandat 734.154 kb on - strandat 734.208 kb on - strandat 734.237 kb on + strandat 734.335 kb on + strandat 734.335 kb on + strandat 734.337 kb on + strandat 734.343 kb on - strandat 734.386 kb on + strandat 734.400 kb on - strandat 734.464 kb on - strand, within Atu3676at 734.464 kb on - strand, within Atu3676at 734.518 kb on - strand, within Atu3676at 734.637 kb on - strand, within Atu3676at 734.663 kb on - strand, within Atu3676at 734.663 kb on - strand, within Atu3676at 734.692 kb on + strand, within Atu3676at 734.717 kb on - strand, within Atu3676at 734.797 kb on - strand, within Atu3676at 734.810 kb on - strand, within Atu3676at 734.889 kb on + strand, within Atu3676at 734.906 kb on + strand, within Atu3676at 734.940 kb on + strand, within Atu3676at 735.046 kb on - strand, within Atu3676at 735.068 kb on - strand, within Atu3676at 735.161 kb on - strandat 735.161 kb on - strandat 735.192 kb on + strandat 735.200 kb on - strandat 735.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
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728,785 - Atu3673 0.71 -1.5
728,838 + Atu3673 0.73 -0.1
728,931 + Atu3673 0.77 -1.4
728,939 - Atu3673 0.77 -0.1
729,179 - Atu3673 0.88 -0.0
729,289 - -0.6
729,319 - -0.0
729,321 - -0.1
729,380 - -0.2
729,581 - Atu3674 0.30 +0.0
729,647 - Atu3674 0.62 -0.5
729,694 + Atu3674 0.85 -0.5
729,771 + -0.5
729,882 - -0.8
729,939 + -3.2
729,970 - -0.4
730,036 - -0.4
730,047 + -0.0
730,054 - -0.4
730,141 + +0.1
730,171 + -1.0
730,171 + +1.6
730,179 - +0.6
730,179 - -0.2
730,179 - -0.0
730,211 - -0.3
730,366 - Atu3675 0.13 -0.1
730,373 + Atu3675 0.13 -0.2
730,383 + Atu3675 0.13 -0.9
730,397 - Atu3675 0.14 +0.5
730,456 - Atu3675 0.15 -1.4
730,456 - Atu3675 0.15 +0.0
730,590 + Atu3675 0.18 -0.7
730,633 + Atu3675 0.19 -0.8
730,633 + Atu3675 0.19 -1.0
730,641 - Atu3675 0.19 -0.8
730,703 - Atu3675 0.20 -0.2
730,703 - Atu3675 0.20 -0.9
730,747 + Atu3675 0.21 -0.8
730,748 + Atu3675 0.21 -0.8
730,756 - Atu3675 0.22 +0.6
730,775 - Atu3675 0.22 +0.2
730,933 - Atu3675 0.26 -0.8
731,186 - Atu3675 0.31 -0.1
731,201 - Atu3675 0.31 +0.0
731,265 + Atu3675 0.33 -1.1
731,290 - Atu3675 0.33 -0.1
731,305 + Atu3675 0.34 -0.4
731,341 + Atu3675 0.34 -0.4
731,379 + Atu3675 0.35 -0.2
731,387 - Atu3675 0.35 -0.4
731,397 - Atu3675 0.36 -0.4
731,397 - Atu3675 0.36 -0.0
731,576 + Atu3675 0.40 -0.4
731,584 - Atu3675 0.40 -0.8
731,586 + Atu3675 0.40 +0.2
731,591 + Atu3675 0.40 -0.5
731,600 + Atu3675 0.40 -0.3
731,618 + Atu3675 0.41 -0.3
731,626 - Atu3675 0.41 -1.0
731,627 + Atu3675 0.41 -0.5
731,627 + Atu3675 0.41 -0.2
731,627 + Atu3675 0.41 -0.4
731,635 - Atu3675 0.41 -0.4
731,635 - Atu3675 0.41 -0.3
731,635 - Atu3675 0.41 -0.3
731,635 - Atu3675 0.41 +0.1
731,711 - Atu3675 0.43 -0.3
731,721 + Atu3675 0.43 +0.6
731,730 + Atu3675 0.43 -0.3
731,734 - Atu3675 0.43 -0.1
731,736 + Atu3675 0.43 -0.1
731,739 + Atu3675 0.43 -0.2
731,813 + Atu3675 0.45 -0.4
731,832 + Atu3675 0.45 -0.5
731,840 - Atu3675 0.45 -1.5
731,861 + Atu3675 0.46 -0.1
731,873 - Atu3675 0.46 -0.5
731,916 - Atu3675 0.47 +0.1
731,975 - Atu3675 0.48 +0.6
732,077 + Atu3675 0.51 -0.1
732,080 - Atu3675 0.51 -0.9
732,091 + Atu3675 0.51 -1.0
732,146 + Atu3675 0.52 -0.2
732,290 - Atu3675 0.55 -0.1
732,306 + Atu3675 0.56 -0.6
732,342 - Atu3675 0.56 -0.4
732,508 + Atu3675 0.60 +0.1
732,544 + Atu3675 0.61 -0.3
732,544 + Atu3675 0.61 -0.2
732,552 - Atu3675 0.61 -0.1
732,605 - Atu3675 0.62 +0.1
732,668 + Atu3675 0.64 -0.5
732,715 - Atu3675 0.65 -0.7
732,824 + Atu3675 0.67 +0.2
732,927 - Atu3675 0.69 -0.3
732,996 - Atu3675 0.71 +0.1
733,139 + Atu3675 0.74 +0.1
733,192 - Atu3675 0.75 -0.1
733,283 + Atu3675 0.77 +0.3
733,321 + Atu3675 0.78 -0.8
733,328 - Atu3675 0.78 -1.1
733,329 - Atu3675 0.78 +0.3
733,370 - Atu3675 0.79 -0.1
733,485 - Atu3675 0.81 -0.3
733,488 - Atu3675 0.82 -1.1
733,491 + Atu3675 0.82 -1.8
733,514 + Atu3675 0.82 -0.3
733,586 + Atu3675 0.84 -0.1
733,640 - Atu3675 0.85 -0.5
733,698 + Atu3675 0.86 -0.4
733,801 + Atu3675 0.88 -0.3
733,819 - Atu3675 0.89 -0.4
733,837 - Atu3675 0.89 +0.1
733,845 + Atu3675 0.89 -0.6
733,847 - Atu3675 0.89 +0.2
733,859 - Atu3675 0.90 +0.3
733,864 - Atu3675 0.90 -0.3
733,878 - -0.4
733,879 - -0.6
733,921 + +0.1
733,957 + +0.9
734,154 - -1.4
734,208 - -1.5
734,237 + -0.7
734,335 + -0.6
734,335 + -0.7
734,337 + +0.3
734,343 - -0.7
734,386 + -0.4
734,400 - +0.0
734,464 - Atu3676 0.15 -0.4
734,464 - Atu3676 0.15 -0.4
734,518 - Atu3676 0.21 -0.5
734,637 - Atu3676 0.34 -0.6
734,663 - Atu3676 0.37 +0.6
734,663 - Atu3676 0.37 -0.7
734,692 + Atu3676 0.41 -0.2
734,717 - Atu3676 0.43 +0.0
734,797 - Atu3676 0.52 -0.4
734,810 - Atu3676 0.54 -0.9
734,889 + Atu3676 0.63 +0.4
734,906 + Atu3676 0.64 -0.5
734,940 + Atu3676 0.68 -0.1
735,046 - Atu3676 0.80 -0.8
735,068 - Atu3676 0.82 -0.2
735,161 - -0.4
735,161 - +0.3
735,192 + -0.2
735,200 - -0.4
735,264 - +0.2

Or see this region's nucleotide sequence