Experiment: L-Ornithine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3301 and Atu3302 are separated by 249 nucleotides Atu3302 and Atu3303 are separated by 60 nucleotides
Atu3301: Atu3301 - short-chain alcohol dehydrogenase, at 328,525 to 329,244
Atu3301
Atu3302: Atu3302 - cellulose biosynthesis protein, at 329,494 to 331,140
Atu3302
Atu3303: Atu3303 - cellulose synthesis protein, at 331,201 to 332,355
Atu3303
Position (kb) 329
330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.581 kb on + strand at 328.601 kb on - strand, within Atu3301 at 328.691 kb on - strand, within Atu3301 at 328.727 kb on + strand, within Atu3301 at 328.814 kb on + strand, within Atu3301 at 328.869 kb on - strand, within Atu3301 at 328.983 kb on - strand, within Atu3301 at 329.030 kb on - strand, within Atu3301 at 329.033 kb on + strand, within Atu3301 at 329.051 kb on - strand, within Atu3301 at 329.086 kb on + strand, within Atu3301 at 329.094 kb on - strand, within Atu3301 at 329.211 kb on + strand at 329.224 kb on - strand at 329.315 kb on + strand at 329.383 kb on + strand at 329.444 kb on - strand at 329.484 kb on - strand at 329.526 kb on - strand at 329.567 kb on - strand at 329.567 kb on - strand at 329.567 kb on - strand at 329.842 kb on - strand, within Atu3302 at 329.850 kb on + strand, within Atu3302 at 329.850 kb on + strand, within Atu3302 at 329.861 kb on + strand, within Atu3302 at 329.935 kb on + strand, within Atu3302 at 329.938 kb on - strand, within Atu3302 at 330.023 kb on - strand, within Atu3302 at 330.091 kb on - strand, within Atu3302 at 330.092 kb on - strand, within Atu3302 at 330.092 kb on - strand, within Atu3302 at 330.105 kb on + strand, within Atu3302 at 330.193 kb on + strand, within Atu3302 at 330.348 kb on + strand, within Atu3302 at 330.515 kb on + strand, within Atu3302 at 330.523 kb on - strand, within Atu3302 at 330.549 kb on - strand, within Atu3302 at 330.599 kb on + strand, within Atu3302 at 330.698 kb on - strand, within Atu3302 at 330.734 kb on - strand, within Atu3302 at 330.861 kb on + strand, within Atu3302 at 330.892 kb on - strand, within Atu3302 at 330.973 kb on + strand, within Atu3302 at 331.041 kb on + strand at 331.121 kb on + strand at 331.151 kb on - strand at 331.323 kb on + strand, within Atu3303 at 331.375 kb on + strand, within Atu3303 at 331.375 kb on + strand, within Atu3303 at 331.385 kb on - strand, within Atu3303 at 331.413 kb on - strand, within Atu3303 at 331.475 kb on - strand, within Atu3303 at 331.565 kb on - strand, within Atu3303 at 331.592 kb on - strand, within Atu3303 at 331.624 kb on + strand, within Atu3303 at 331.714 kb on + strand, within Atu3303 at 331.785 kb on - strand, within Atu3303 at 331.803 kb on - strand, within Atu3303 at 331.855 kb on + strand, within Atu3303 at 331.899 kb on + strand, within Atu3303 at 331.901 kb on + strand, within Atu3303 at 331.965 kb on + strand, within Atu3303 at 331.965 kb on + strand, within Atu3303 at 331.973 kb on - strand, within Atu3303 at 331.973 kb on - strand, within Atu3303 at 332.028 kb on + strand, within Atu3303 at 332.086 kb on - strand, within Atu3303
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine (N) remove 328,581 + -1.2 328,601 - Atu3301 0.11 -0.1 328,691 - Atu3301 0.23 -1.0 328,727 + Atu3301 0.28 -1.4 328,814 + Atu3301 0.40 -1.3 328,869 - Atu3301 0.48 -1.6 328,983 - Atu3301 0.64 -1.3 329,030 - Atu3301 0.70 -0.1 329,033 + Atu3301 0.71 -0.6 329,051 - Atu3301 0.73 -2.7 329,086 + Atu3301 0.78 -1.6 329,094 - Atu3301 0.79 -1.8 329,211 + -1.7 329,224 - -2.4 329,315 + -0.8 329,383 + +1.2 329,444 - +1.9 329,484 - +1.9 329,526 - +1.0 329,567 - +0.9 329,567 - +0.8 329,567 - +0.7 329,842 - Atu3302 0.21 +0.7 329,850 + Atu3302 0.22 +0.5 329,850 + Atu3302 0.22 +0.2 329,861 + Atu3302 0.22 +0.2 329,935 + Atu3302 0.27 +1.8 329,938 - Atu3302 0.27 +0.0 330,023 - Atu3302 0.32 +0.0 330,091 - Atu3302 0.36 +0.5 330,092 - Atu3302 0.36 +0.6 330,092 - Atu3302 0.36 +0.4 330,105 + Atu3302 0.37 +0.2 330,193 + Atu3302 0.42 +0.2 330,348 + Atu3302 0.52 -0.2 330,515 + Atu3302 0.62 +0.3 330,523 - Atu3302 0.62 +0.3 330,549 - Atu3302 0.64 +0.9 330,599 + Atu3302 0.67 +0.1 330,698 - Atu3302 0.73 -0.1 330,734 - Atu3302 0.75 +1.9 330,861 + Atu3302 0.83 +0.0 330,892 - Atu3302 0.85 +1.0 330,973 + Atu3302 0.90 +0.6 331,041 + +0.1 331,121 + -0.5 331,151 - +0.1 331,323 + Atu3303 0.11 +0.0 331,375 + Atu3303 0.15 +0.5 331,375 + Atu3303 0.15 -0.1 331,385 - Atu3303 0.16 -0.4 331,413 - Atu3303 0.18 +0.1 331,475 - Atu3303 0.24 -0.1 331,565 - Atu3303 0.32 -0.1 331,592 - Atu3303 0.34 +0.1 331,624 + Atu3303 0.37 +0.4 331,714 + Atu3303 0.44 +0.1 331,785 - Atu3303 0.51 +1.2 331,803 - Atu3303 0.52 +0.2 331,855 + Atu3303 0.57 -0.1 331,899 + Atu3303 0.60 -0.1 331,901 + Atu3303 0.61 +0.0 331,965 + Atu3303 0.66 +0.3 331,965 + Atu3303 0.66 +0.5 331,973 - Atu3303 0.67 -0.5 331,973 - Atu3303 0.67 +0.1 332,028 + Atu3303 0.72 -0.0 332,086 - Atu3303 0.77 -0.6
Or see this region's nucleotide sequence