Strain Fitness in Agrobacterium fabrum C58 around Atu1444

Experiment: L-Ornithine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1443 and Atu1444 are separated by 276 nucleotidesAtu1444 and Atu1445 overlap by 4 nucleotides Atu1443: Atu1443 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein, at 1,435,677 to 1,436,864 Atu1443 Atu1444: Atu1444 - nitrogen regulation protein, at 1,437,141 to 1,438,157 Atu1444 Atu1445: Atu1445 - two component sensor kinase, at 1,438,154 to 1,439,302 Atu1445 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1436.901 kb on + strandat 1436.919 kb on - strandat 1436.931 kb on - strandat 1437.014 kb on - strandat 1437.071 kb on + strandat 1437.172 kb on + strandat 1437.266 kb on + strand, within Atu1444at 1437.535 kb on + strand, within Atu1444at 1437.543 kb on - strand, within Atu1444at 1437.681 kb on + strand, within Atu1444at 1437.704 kb on - strand, within Atu1444at 1437.813 kb on + strand, within Atu1444at 1438.024 kb on + strand, within Atu1444at 1438.029 kb on + strand, within Atu1444at 1438.045 kb on + strand, within Atu1444at 1438.061 kb on + strandat 1438.089 kb on - strandat 1438.095 kb on + strandat 1438.105 kb on + strandat 1438.113 kb on - strandat 1438.113 kb on - strandat 1438.176 kb on + strandat 1438.225 kb on - strandat 1438.302 kb on + strand, within Atu1445at 1438.366 kb on + strand, within Atu1445at 1438.366 kb on + strand, within Atu1445at 1438.436 kb on + strand, within Atu1445at 1438.696 kb on + strand, within Atu1445at 1438.701 kb on + strand, within Atu1445at 1438.790 kb on + strand, within Atu1445at 1438.819 kb on + strand, within Atu1445at 1439.042 kb on + strand, within Atu1445at 1439.069 kb on - strand, within Atu1445at 1439.133 kb on + strand, within Atu1445

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
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1,436,901 + +0.6
1,436,919 - +0.7
1,436,931 - -0.0
1,437,014 - -1.0
1,437,071 + +0.2
1,437,172 + -1.0
1,437,266 + Atu1444 0.12 -0.8
1,437,535 + Atu1444 0.39 -1.8
1,437,543 - Atu1444 0.40 -1.6
1,437,681 + Atu1444 0.53 -0.8
1,437,704 - Atu1444 0.55 -1.0
1,437,813 + Atu1444 0.66 +1.5
1,438,024 + Atu1444 0.87 -0.4
1,438,029 + Atu1444 0.87 -1.4
1,438,045 + Atu1444 0.89 -0.0
1,438,061 + -0.1
1,438,089 - -0.4
1,438,095 + +1.4
1,438,105 + -0.2
1,438,113 - -0.4
1,438,113 - +2.8
1,438,176 + -2.0
1,438,225 - -1.7
1,438,302 + Atu1445 0.13 -1.6
1,438,366 + Atu1445 0.18 -2.5
1,438,366 + Atu1445 0.18 +0.2
1,438,436 + Atu1445 0.25 -1.9
1,438,696 + Atu1445 0.47 -4.5
1,438,701 + Atu1445 0.48 -1.9
1,438,790 + Atu1445 0.55 -2.4
1,438,819 + Atu1445 0.58 -2.2
1,439,042 + Atu1445 0.77 -2.1
1,439,069 - Atu1445 0.80 -3.2
1,439,133 + Atu1445 0.85 -0.8

Or see this region's nucleotide sequence