Experiment: L-Ornithine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0332 and Atu0333 are separated by 152 nucleotides Atu0333 and Atu0334 are separated by 9 nucleotides Atu0334 and Atu0335 are separated by 13 nucleotides
Atu0332: Atu0332 - RNA polymerase sigma-54 factor, at 325,172 to 326,716
Atu0332
Atu0333: Atu0333 - ABC transporter, nucleotide binding/ATPase protein, at 326,869 to 327,678
Atu0333
Atu0334: Atu0334 - hypothetical protein, at 327,688 to 328,251
Atu0334
Atu0335: Atu0335 - hypothetical protein, at 328,265 to 328,972
Atu0335
Position (kb) 326
327
328 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 325.881 kb on - strand, within Atu0332 at 326.015 kb on - strand, within Atu0332 at 326.145 kb on - strand, within Atu0332 at 326.179 kb on + strand, within Atu0332 at 326.205 kb on - strand, within Atu0332 at 326.299 kb on - strand, within Atu0332 at 326.326 kb on - strand, within Atu0332 at 326.431 kb on + strand, within Atu0332 at 326.585 kb on - strand at 326.646 kb on - strand at 326.664 kb on + strand at 326.664 kb on - strand at 326.674 kb on - strand at 326.688 kb on - strand at 328.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine (N) remove 325,881 - Atu0332 0.46 -0.5 326,015 - Atu0332 0.55 -3.4 326,145 - Atu0332 0.63 -2.0 326,179 + Atu0332 0.65 -1.6 326,205 - Atu0332 0.67 -3.0 326,299 - Atu0332 0.73 -0.9 326,326 - Atu0332 0.75 -5.3 326,431 + Atu0332 0.81 -2.3 326,585 - -3.7 326,646 - -2.9 326,664 + -2.9 326,664 - -1.6 326,674 - -1.9 326,688 - -3.0 328,313 - +0.5
Or see this region's nucleotide sequence