Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS21505

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS21500 and RPSI07_RS21505 are separated by 211 nucleotidesRPSI07_RS21505 and RPSI07_RS21510 overlap by 4 nucleotides RPSI07_RS21500: RPSI07_RS21500 - bifunctional diguanylate cyclase/phosphodiesterase, at 2,984,954 to 2,987,059 _RS21500 RPSI07_RS21505: RPSI07_RS21505 - Xaa-Pro aminopeptidase, at 2,987,271 to 2,988,647 _RS21505 RPSI07_RS21510: RPSI07_RS21510 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 2,988,644 to 2,989,879 _RS21510 Position (kb) 2987 2988 2989Strain fitness (log2 ratio) -1 0 1 2 3 4at 2986.492 kb on - strand, within RPSI07_RS21500at 2986.492 kb on - strand, within RPSI07_RS21500at 2986.651 kb on - strand, within RPSI07_RS21500at 2986.692 kb on + strand, within RPSI07_RS21500at 2986.693 kb on - strand, within RPSI07_RS21500at 2986.693 kb on - strand, within RPSI07_RS21500at 2987.043 kb on + strandat 2987.043 kb on + strandat 2987.043 kb on + strandat 2987.043 kb on + strandat 2987.043 kb on + strandat 2987.044 kb on - strandat 2987.044 kb on - strandat 2987.044 kb on - strandat 2987.044 kb on - strandat 2987.180 kb on - strandat 2987.180 kb on - strandat 2987.180 kb on - strandat 2987.234 kb on - strandat 2987.436 kb on + strand, within RPSI07_RS21505at 2987.436 kb on + strand, within RPSI07_RS21505at 2987.758 kb on + strand, within RPSI07_RS21505

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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2,986,492 - RPSI07_RS21500 0.73 -1.7
2,986,492 - RPSI07_RS21500 0.73 +1.6
2,986,651 - RPSI07_RS21500 0.81 +0.3
2,986,692 + RPSI07_RS21500 0.83 -1.1
2,986,693 - RPSI07_RS21500 0.83 -0.1
2,986,693 - RPSI07_RS21500 0.83 -0.4
2,987,043 + +2.9
2,987,043 + -0.4
2,987,043 + +4.2
2,987,043 + +3.6
2,987,043 + -0.5
2,987,044 - +0.6
2,987,044 - +0.9
2,987,044 - +1.8
2,987,044 - -0.4
2,987,180 - -0.4
2,987,180 - -1.6
2,987,180 - +4.0
2,987,234 - +1.4
2,987,436 + RPSI07_RS21505 0.12 +1.2
2,987,436 + RPSI07_RS21505 0.12 +0.6
2,987,758 + RPSI07_RS21505 0.35 -0.4

Or see this region's nucleotide sequence