Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS12190 and RPSI07_RS12195 are separated by 108 nucleotides RPSI07_RS12195 and RPSI07_RS12200 are separated by 6 nucleotides RPSI07_RS12200 and RPSI07_RS12205 are separated by 159 nucleotides
RPSI07_RS12190: RPSI07_RS12190 - bile acid:sodium symporter, at 933,820 to 934,839
_RS12190
RPSI07_RS12195: RPSI07_RS12195 - LysR family transcriptional regulator, at 934,948 to 935,841
_RS12195
RPSI07_RS12200: RPSI07_RS12200 - 3-hydroxyacyl-CoA dehydrogenase, at 935,848 to 936,606
_RS12200
RPSI07_RS12205: RPSI07_RS12205 - adenylate kinase, at 936,766 to 937,434
_RS12205
Position (kb) 934
935
936 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 934.154 kb on + strand, within RPSI07_RS12190 at 934.155 kb on - strand, within RPSI07_RS12190 at 934.250 kb on + strand, within RPSI07_RS12190 at 934.250 kb on + strand, within RPSI07_RS12190 at 934.250 kb on + strand, within RPSI07_RS12190 at 934.250 kb on + strand, within RPSI07_RS12190 at 934.250 kb on + strand, within RPSI07_RS12190 at 934.251 kb on - strand, within RPSI07_RS12190 at 934.251 kb on - strand, within RPSI07_RS12190 at 934.251 kb on - strand, within RPSI07_RS12190 at 934.251 kb on - strand, within RPSI07_RS12190 at 934.251 kb on - strand, within RPSI07_RS12190 at 934.437 kb on - strand, within RPSI07_RS12190 at 934.517 kb on + strand, within RPSI07_RS12190 at 934.518 kb on - strand, within RPSI07_RS12190 at 934.904 kb on + strand at 934.909 kb on + strand at 934.909 kb on + strand at 934.910 kb on - strand at 934.936 kb on + strand at 934.936 kb on + strand at 935.120 kb on + strand, within RPSI07_RS12195 at 935.120 kb on + strand, within RPSI07_RS12195 at 935.278 kb on + strand, within RPSI07_RS12195 at 935.279 kb on - strand, within RPSI07_RS12195 at 935.279 kb on - strand, within RPSI07_RS12195 at 935.279 kb on - strand, within RPSI07_RS12195 at 935.849 kb on + strand at 935.850 kb on - strand at 935.850 kb on - strand at 935.850 kb on - strand at 935.850 kb on - strand at 935.940 kb on - strand, within RPSI07_RS12200 at 936.134 kb on + strand, within RPSI07_RS12200 at 936.135 kb on - strand, within RPSI07_RS12200 at 936.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 934,154 + RPSI07_RS12190 0.33 +0.9 934,155 - RPSI07_RS12190 0.33 -1.7 934,250 + RPSI07_RS12190 0.42 +1.3 934,250 + RPSI07_RS12190 0.42 -0.0 934,250 + RPSI07_RS12190 0.42 -0.2 934,250 + RPSI07_RS12190 0.42 +0.4 934,250 + RPSI07_RS12190 0.42 -0.2 934,251 - RPSI07_RS12190 0.42 +1.8 934,251 - RPSI07_RS12190 0.42 +1.2 934,251 - RPSI07_RS12190 0.42 -0.1 934,251 - RPSI07_RS12190 0.42 -0.4 934,251 - RPSI07_RS12190 0.42 -2.5 934,437 - RPSI07_RS12190 0.60 +1.2 934,517 + RPSI07_RS12190 0.68 +0.1 934,518 - RPSI07_RS12190 0.68 -1.4 934,904 + +0.2 934,909 + -0.4 934,909 + +0.3 934,910 - +0.6 934,936 + +1.3 934,936 + +0.3 935,120 + RPSI07_RS12195 0.19 +0.7 935,120 + RPSI07_RS12195 0.19 -0.1 935,278 + RPSI07_RS12195 0.37 +1.6 935,279 - RPSI07_RS12195 0.37 +1.8 935,279 - RPSI07_RS12195 0.37 -3.3 935,279 - RPSI07_RS12195 0.37 -1.4 935,849 + +1.0 935,850 - -0.1 935,850 - +0.3 935,850 - -2.0 935,850 - -2.0 935,940 - RPSI07_RS12200 0.12 +2.2 936,134 + RPSI07_RS12200 0.38 +1.5 936,135 - RPSI07_RS12200 0.38 +0.9 936,635 - -0.4
Or see this region's nucleotide sequence