Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS08415

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS08410 and RPSI07_RS08415 overlap by 1 nucleotidesRPSI07_RS08415 and RPSI07_RS08420 are separated by 40 nucleotidesRPSI07_RS08420 and RPSI07_RS08425 are separated by 26 nucleotides RPSI07_RS08410: RPSI07_RS08410 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 120,899 to 122,842 _RS08410 RPSI07_RS08415: RPSI07_RS08415 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 122,842 to 123,513 _RS08415 RPSI07_RS08420: RPSI07_RS08420 - ParA family protein, at 123,554 to 124,339 _RS08420 RPSI07_RS08425: RPSI07_RS08425 - chromosome partitioning protein ParB, at 124,366 to 125,277 _RS08425 Position (kb) 122 123 124Strain fitness (log2 ratio) -1 0 1at 122.850 kb on + strandat 122.944 kb on + strand, within RPSI07_RS08415at 122.977 kb on + strand, within RPSI07_RS08415at 124.043 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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122,850 + -1.0
122,944 + RPSI07_RS08415 0.15 +1.1
122,977 + RPSI07_RS08415 0.20 -0.7
124,043 - -1.2

Or see this region's nucleotide sequence