Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS08295 and RPSI07_RS08300 are separated by 193 nucleotides RPSI07_RS08300 and RPSI07_RS08305 are separated by 65 nucleotides RPSI07_RS08305 and RPSI07_RS08310 are separated by 150 nucleotides
RPSI07_RS08295: RPSI07_RS08295 - ornithine cyclodeaminase, at 99,688 to 100,683
_RS08295
RPSI07_RS08300: RPSI07_RS08300 - OmpW family protein, at 100,877 to 101,602
_RS08300
RPSI07_RS08305: RPSI07_RS08305 - copper chaperone, at 101,668 to 101,868
_RS08305
RPSI07_RS08310: RPSI07_RS08310 - copper-translocating P-type ATPase, at 102,019 to 104,265
_RS08310
Position (kb) 100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 100.279 kb on + strand, within RPSI07_RS08295 at 100.280 kb on - strand, within RPSI07_RS08295 at 100.280 kb on - strand, within RPSI07_RS08295 at 100.280 kb on - strand, within RPSI07_RS08295 at 100.348 kb on - strand, within RPSI07_RS08295 at 100.607 kb on + strand at 100.738 kb on + strand at 100.738 kb on + strand at 100.752 kb on + strand at 100.753 kb on - strand at 100.753 kb on - strand at 100.753 kb on - strand at 100.820 kb on + strand at 100.820 kb on + strand at 100.821 kb on - strand at 100.821 kb on - strand at 100.821 kb on - strand at 100.821 kb on - strand at 100.821 kb on - strand at 100.821 kb on - strand at 100.821 kb on - strand at 100.833 kb on + strand at 100.859 kb on - strand at 100.859 kb on - strand at 100.859 kb on - strand at 100.859 kb on - strand at 100.859 kb on - strand at 100.859 kb on - strand at 100.859 kb on - strand at 100.859 kb on - strand at 100.872 kb on + strand at 100.872 kb on + strand at 100.872 kb on + strand at 100.872 kb on + strand at 100.872 kb on + strand at 100.872 kb on + strand at 100.873 kb on - strand at 100.873 kb on - strand at 100.883 kb on + strand at 100.883 kb on + strand at 100.884 kb on - strand at 100.885 kb on + strand at 100.886 kb on - strand at 101.087 kb on - strand, within RPSI07_RS08300 at 101.249 kb on + strand, within RPSI07_RS08300 at 101.249 kb on + strand, within RPSI07_RS08300 at 101.249 kb on + strand, within RPSI07_RS08300 at 101.250 kb on - strand, within RPSI07_RS08300 at 101.250 kb on - strand, within RPSI07_RS08300 at 101.283 kb on - strand, within RPSI07_RS08300 at 101.303 kb on + strand, within RPSI07_RS08300 at 101.303 kb on + strand, within RPSI07_RS08300 at 101.303 kb on + strand, within RPSI07_RS08300 at 101.303 kb on + strand, within RPSI07_RS08300 at 101.303 kb on + strand, within RPSI07_RS08300 at 101.304 kb on - strand, within RPSI07_RS08300 at 101.304 kb on - strand, within RPSI07_RS08300 at 101.304 kb on - strand, within RPSI07_RS08300 at 101.435 kb on + strand, within RPSI07_RS08300 at 101.435 kb on + strand, within RPSI07_RS08300 at 101.435 kb on + strand, within RPSI07_RS08300 at 101.435 kb on + strand, within RPSI07_RS08300 at 101.436 kb on - strand, within RPSI07_RS08300 at 101.436 kb on - strand, within RPSI07_RS08300 at 101.436 kb on - strand, within RPSI07_RS08300 at 101.436 kb on - strand, within RPSI07_RS08300 at 101.436 kb on - strand, within RPSI07_RS08300 at 101.436 kb on - strand, within RPSI07_RS08300 at 101.477 kb on + strand, within RPSI07_RS08300 at 101.477 kb on + strand, within RPSI07_RS08300 at 101.477 kb on + strand, within RPSI07_RS08300 at 101.477 kb on + strand, within RPSI07_RS08300 at 101.477 kb on + strand, within RPSI07_RS08300 at 101.478 kb on - strand, within RPSI07_RS08300 at 101.478 kb on - strand, within RPSI07_RS08300 at 101.478 kb on - strand, within RPSI07_RS08300 at 101.478 kb on - strand, within RPSI07_RS08300 at 101.478 kb on - strand, within RPSI07_RS08300 at 101.509 kb on + strand, within RPSI07_RS08300 at 101.652 kb on + strand at 101.743 kb on + strand, within RPSI07_RS08305 at 101.776 kb on + strand, within RPSI07_RS08305 at 101.776 kb on + strand, within RPSI07_RS08305 at 101.777 kb on - strand, within RPSI07_RS08305 at 101.777 kb on - strand, within RPSI07_RS08305 at 101.777 kb on - strand, within RPSI07_RS08305 at 101.777 kb on - strand, within RPSI07_RS08305 at 101.777 kb on - strand, within RPSI07_RS08305 at 101.899 kb on + strand at 101.900 kb on - strand at 101.900 kb on - strand at 101.900 kb on - strand at 101.912 kb on + strand at 101.913 kb on - strand at 101.913 kb on - strand at 101.924 kb on + strand at 101.924 kb on + strand at 101.924 kb on + strand at 101.924 kb on + strand at 101.924 kb on + strand at 101.925 kb on - strand at 101.944 kb on + strand at 101.944 kb on + strand at 101.944 kb on + strand at 101.945 kb on - strand at 101.965 kb on + strand at 101.970 kb on + strand at 101.970 kb on + strand at 101.970 kb on + strand at 101.970 kb on + strand at 101.970 kb on + strand at 101.971 kb on - strand at 101.971 kb on - strand at 101.971 kb on - strand at 101.971 kb on - strand at 102.529 kb on + strand, within RPSI07_RS08310 at 102.586 kb on + strand, within RPSI07_RS08310 at 102.586 kb on + strand, within RPSI07_RS08310 at 102.587 kb on - strand, within RPSI07_RS08310 at 102.587 kb on - strand, within RPSI07_RS08310 at 102.587 kb on - strand, within RPSI07_RS08310
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 100,279 + RPSI07_RS08295 0.59 -2.0 100,280 - RPSI07_RS08295 0.59 -1.2 100,280 - RPSI07_RS08295 0.59 -0.8 100,280 - RPSI07_RS08295 0.59 -0.8 100,348 - RPSI07_RS08295 0.66 +1.2 100,607 + +1.8 100,738 + +0.8 100,738 + -0.5 100,752 + -0.6 100,753 - -0.2 100,753 - +0.8 100,753 - -0.3 100,820 + +2.8 100,820 + -0.2 100,821 - -0.9 100,821 - -1.4 100,821 - -1.2 100,821 - +0.4 100,821 - -0.0 100,821 - -2.0 100,821 - +1.8 100,833 + +2.1 100,859 - +0.5 100,859 - +1.0 100,859 - +0.3 100,859 - -0.1 100,859 - +1.2 100,859 - +0.5 100,859 - -1.6 100,859 - -0.2 100,872 + +0.4 100,872 + +3.4 100,872 + +1.1 100,872 + +1.5 100,872 + +1.8 100,872 + +0.4 100,873 - +1.3 100,873 - +0.2 100,883 + +0.3 100,883 + +0.6 100,884 - +0.0 100,885 + +1.1 100,886 - +0.0 101,087 - RPSI07_RS08300 0.29 +0.2 101,249 + RPSI07_RS08300 0.51 -1.2 101,249 + RPSI07_RS08300 0.51 +0.7 101,249 + RPSI07_RS08300 0.51 +0.5 101,250 - RPSI07_RS08300 0.51 +1.6 101,250 - RPSI07_RS08300 0.51 +1.7 101,283 - RPSI07_RS08300 0.56 +0.8 101,303 + RPSI07_RS08300 0.59 +0.5 101,303 + RPSI07_RS08300 0.59 +0.7 101,303 + RPSI07_RS08300 0.59 +0.7 101,303 + RPSI07_RS08300 0.59 +0.9 101,303 + RPSI07_RS08300 0.59 +0.7 101,304 - RPSI07_RS08300 0.59 +1.2 101,304 - RPSI07_RS08300 0.59 -0.2 101,304 - RPSI07_RS08300 0.59 +0.4 101,435 + RPSI07_RS08300 0.77 +0.6 101,435 + RPSI07_RS08300 0.77 +0.3 101,435 + RPSI07_RS08300 0.77 +0.8 101,435 + RPSI07_RS08300 0.77 -1.6 101,436 - RPSI07_RS08300 0.77 +1.5 101,436 - RPSI07_RS08300 0.77 +1.0 101,436 - RPSI07_RS08300 0.77 +1.1 101,436 - RPSI07_RS08300 0.77 +1.9 101,436 - RPSI07_RS08300 0.77 +0.6 101,436 - RPSI07_RS08300 0.77 +0.6 101,477 + RPSI07_RS08300 0.83 +0.2 101,477 + RPSI07_RS08300 0.83 +0.4 101,477 + RPSI07_RS08300 0.83 +1.6 101,477 + RPSI07_RS08300 0.83 +0.9 101,477 + RPSI07_RS08300 0.83 -0.4 101,478 - RPSI07_RS08300 0.83 +0.9 101,478 - RPSI07_RS08300 0.83 +1.6 101,478 - RPSI07_RS08300 0.83 +1.2 101,478 - RPSI07_RS08300 0.83 +0.6 101,478 - RPSI07_RS08300 0.83 +1.7 101,509 + RPSI07_RS08300 0.87 +1.3 101,652 + -0.2 101,743 + RPSI07_RS08305 0.37 +2.6 101,776 + RPSI07_RS08305 0.54 +1.9 101,776 + RPSI07_RS08305 0.54 +0.5 101,777 - RPSI07_RS08305 0.54 -3.2 101,777 - RPSI07_RS08305 0.54 +1.2 101,777 - RPSI07_RS08305 0.54 +0.6 101,777 - RPSI07_RS08305 0.54 -1.4 101,777 - RPSI07_RS08305 0.54 +2.2 101,899 + +2.9 101,900 - -0.2 101,900 - -0.2 101,900 - +0.6 101,912 + -0.8 101,913 - -0.3 101,913 - -1.8 101,924 + +0.8 101,924 + -1.2 101,924 + -0.3 101,924 + -0.9 101,924 + -0.7 101,925 - -1.3 101,944 + -0.9 101,944 + +2.1 101,944 + -0.6 101,945 - +0.8 101,965 + +0.1 101,970 + +1.6 101,970 + +0.5 101,970 + +3.5 101,970 + +0.4 101,970 + -1.2 101,971 - +0.4 101,971 - +2.4 101,971 - +3.5 101,971 - -0.7 102,529 + RPSI07_RS08310 0.23 +0.2 102,586 + RPSI07_RS08310 0.25 -0.2 102,586 + RPSI07_RS08310 0.25 -1.4 102,587 - RPSI07_RS08310 0.25 -1.2 102,587 - RPSI07_RS08310 0.25 -2.2 102,587 - RPSI07_RS08310 0.25 -3.6
Or see this region's nucleotide sequence