Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05890

Experiment: M63_quarter_strength

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M63_quarter_strength
1,602,384	-		RPSI07_RS05885	0.40	+1.2
1,602,384	-		RPSI07_RS05885	0.40	-1.1
1,602,455	+		RPSI07_RS05885	0.44	+0.4
1,602,455	+		RPSI07_RS05885	0.44	+0.8
1,602,456	-		RPSI07_RS05885	0.44	-1.9
1,602,456	-		RPSI07_RS05885	0.44	+3.4
1,602,456	-		RPSI07_RS05885	0.44	+1.3
1,602,456	-		RPSI07_RS05885	0.44	+1.2
1,602,456	-		RPSI07_RS05885	0.44	+1.2
1,602,456	-		RPSI07_RS05885	0.44	-0.8
1,602,456	-		RPSI07_RS05885	0.44	-0.6
1,602,530	+		RPSI07_RS05885	0.48	+2.2
1,602,530	+		RPSI07_RS05885	0.48	+0.0
1,602,530	+		RPSI07_RS05885	0.48	-1.9
1,602,531	-		RPSI07_RS05885	0.48	+0.5
1,602,531	-		RPSI07_RS05885	0.48	+0.9
1,602,531	-		RPSI07_RS05885	0.48	+1.9
1,602,533	+		RPSI07_RS05885	0.48	+1.5
1,602,534	-		RPSI07_RS05885	0.48	+1.2
1,602,636	-		RPSI07_RS05885	0.54	+0.2
1,602,636	-		RPSI07_RS05885	0.54	+0.7
1,602,647	+		RPSI07_RS05885	0.54	+1.7
1,602,647	+		RPSI07_RS05885	0.54	-0.3
1,602,648	-		RPSI07_RS05885	0.54	+1.5
1,602,962	+		RPSI07_RS05885	0.72	-1.3
1,602,963	-		RPSI07_RS05885	0.72	-0.7
1,602,963	-		RPSI07_RS05885	0.72	+0.9
1,602,963	-		RPSI07_RS05885	0.72	-0.3
1,602,963	-		RPSI07_RS05885	0.72	-0.1
1,603,094	+		RPSI07_RS05885	0.79	-0.2
1,603,094	+		RPSI07_RS05885	0.79	+1.0
1,603,555	+				+0.4
1,603,555	+				-0.3
1,603,634	-				+0.2
1,603,645	+				+0.2
1,603,645	+				-0.1
1,603,645	+				+0.5
1,603,680	-				-0.3
1,603,681	+				+2.1
1,603,681	+				-2.7
1,603,681	+				-1.6
1,603,681	+				-0.3
1,603,681	+				-0.6
1,603,682	-				+2.0
1,603,682	-				+3.7
1,603,682	-				+1.1
1,603,682	-				-2.2
1,603,682	-				+0.7
1,603,682	-				-0.3
1,603,685	+				+0.7
1,603,780	+				-0.3
1,603,780	+				-0.1
1,603,780	+				-0.4
1,603,780	+				-0.6
1,603,780	+				+3.5
1,603,780	+				+2.2
1,603,780	+				+0.7
1,603,780	+				-0.2
1,603,781	-				+0.8
1,603,781	-				-1.1
1,603,781	-				-0.7
1,603,781	-				+1.3
1,603,781	-				-0.2
1,603,781	-				-0.9
1,603,936	+		RPSI07_RS05890	0.14	+0.7
1,603,937	-		RPSI07_RS05890	0.14	+2.2
1,604,025	-		RPSI07_RS05890	0.16	+0.2
1,604,025	-		RPSI07_RS05890	0.16	+0.7
1,604,027	-		RPSI07_RS05890	0.16	+3.8
1,604,027	-		RPSI07_RS05890	0.16	-1.1
1,604,027	-		RPSI07_RS05890	0.16	+1.2
1,604,062	+		RPSI07_RS05890	0.17	-0.1
1,604,062	+		RPSI07_RS05890	0.17	-1.9
1,604,063	-		RPSI07_RS05890	0.17	+2.1
1,604,063	-		RPSI07_RS05890	0.17	-0.5
1,604,072	+		RPSI07_RS05890	0.17	-0.3
1,604,073	-		RPSI07_RS05890	0.17	+0.1
1,604,119	+		RPSI07_RS05890	0.18	+0.5
1,604,119	+		RPSI07_RS05890	0.18	+1.1
1,604,119	+		RPSI07_RS05890	0.18	+0.3
1,604,120	-		RPSI07_RS05890	0.18	+1.2
1,604,120	-		RPSI07_RS05890	0.18	-1.8
1,604,120	-		RPSI07_RS05890	0.18	+1.2
1,604,120	-		RPSI07_RS05890	0.18	-0.5
1,604,120	-		RPSI07_RS05890	0.18	-0.1
1,604,128	+		RPSI07_RS05890	0.18	-1.2
1,604,128	+		RPSI07_RS05890	0.18	-0.3
1,604,128	+		RPSI07_RS05890	0.18	+0.3
1,604,128	+		RPSI07_RS05890	0.18	-0.3
1,604,129	-		RPSI07_RS05890	0.18	+1.4
1,604,129	-		RPSI07_RS05890	0.18	+0.7
1,604,129	-		RPSI07_RS05890	0.18	-0.3
1,604,186	-		RPSI07_RS05890	0.20	-0.4
1,604,263	+		RPSI07_RS05890	0.22	+0.7
1,604,263	+		RPSI07_RS05890	0.22	-0.5
1,604,263	+		RPSI07_RS05890	0.22	+1.8
1,604,264	-		RPSI07_RS05890	0.22	+0.3
1,604,264	-		RPSI07_RS05890	0.22	-0.3
1,604,807	-		RPSI07_RS05890	0.35	-0.7
1,604,983	+		RPSI07_RS05890	0.39	-0.8
1,604,983	+		RPSI07_RS05890	0.39	+0.1
1,604,983	+		RPSI07_RS05890	0.39	+1.4
1,604,984	-		RPSI07_RS05890	0.39	+0.4
1,604,984	-		RPSI07_RS05890	0.39	+0.5
1,604,995	+		RPSI07_RS05890	0.40	-0.9
1,604,996	-		RPSI07_RS05890	0.40	+0.8
1,604,996	-		RPSI07_RS05890	0.40	+1.7
1,605,371	+		RPSI07_RS05890	0.49	+0.5
1,605,371	+		RPSI07_RS05890	0.49	+0.7
1,605,371	+		RPSI07_RS05890	0.49	-0.9
1,605,371	+		RPSI07_RS05890	0.49	-1.3
1,605,371	+		RPSI07_RS05890	0.49	+1.2
1,605,371	+		RPSI07_RS05890	0.49	-0.3
1,605,371	+		RPSI07_RS05890	0.49	-0.3
1,605,371	+		RPSI07_RS05890	0.49	+1.6
1,605,371	+		RPSI07_RS05890	0.49	-0.5
1,605,371	+				-0.3
1,605,446	+		RPSI07_RS05890	0.51	-1.2
1,605,446	+		RPSI07_RS05890	0.51	+0.2
1,605,447	-		RPSI07_RS05890	0.51	+0.8
1,605,503	+		RPSI07_RS05890	0.52	+0.3
1,605,504	-		RPSI07_RS05890	0.52	-1.4
1,605,622	+		RPSI07_RS05890	0.55	-1.2
1,605,623	-		RPSI07_RS05890	0.55	+1.4
1,605,671	+		RPSI07_RS05890	0.56	+1.2
1,605,671	+		RPSI07_RS05890	0.56	-1.1
1,605,699	-		RPSI07_RS05890	0.57	-0.9
1,605,699	-		RPSI07_RS05890	0.57	+0.4
1,605,762	-		RPSI07_RS05890	0.59	-0.3
1,605,762	-		RPSI07_RS05890	0.59	+0.5
1,605,791	-		RPSI07_RS05890	0.59	-1.7
1,605,791	-		RPSI07_RS05890	0.59	+0.2
1,605,791	-		RPSI07_RS05890	0.59	+0.4
1,605,791	-		RPSI07_RS05890	0.59	-0.0
1,606,133	+		RPSI07_RS05890	0.68	+0.1
1,606,156	+		RPSI07_RS05890	0.68	-0.9
1,606,156	+		RPSI07_RS05890	0.68	-0.9
1,606,156	+		RPSI07_RS05890	0.68	+0.9
1,606,156	+		RPSI07_RS05890	0.68	-0.9
1,606,157	-		RPSI07_RS05890	0.68	-0.9
1,606,157	-		RPSI07_RS05890	0.68	+1.0
1,606,157	-		RPSI07_RS05890	0.68	+0.2
1,606,258	+		RPSI07_RS05890	0.71	-2.2
1,606,258	+		RPSI07_RS05890	0.71	+0.9
1,606,258	+		RPSI07_RS05890	0.71	-0.4
1,606,258	+		RPSI07_RS05890	0.71	+0.9
1,606,259	-		RPSI07_RS05890	0.71	-0.0
1,606,259	-		RPSI07_RS05890	0.71	-0.9
1,606,269	-		RPSI07_RS05890	0.71	-1.9
1,606,307	-		RPSI07_RS05890	0.72	-0.3
1,606,307	-		RPSI07_RS05890	0.72	-1.6
1,606,399	+		RPSI07_RS05890	0.74	-0.8
1,606,399	+		RPSI07_RS05890	0.74	+0.3
1,606,400	-		RPSI07_RS05890	0.74	+1.5
1,606,400	-		RPSI07_RS05890	0.74	+2.3
1,606,488	+		RPSI07_RS05890	0.76	-0.6
1,606,673	+		RPSI07_RS05890	0.81	-0.0
1,606,673	+		RPSI07_RS05890	0.81	-1.1
1,606,673	+		RPSI07_RS05890	0.81	-1.0
1,606,673	+		RPSI07_RS05890	0.81	-0.2
1,606,674	-		RPSI07_RS05890	0.81	-1.0
1,606,674	-		RPSI07_RS05890	0.81	+0.1
1,606,674	-		RPSI07_RS05890	0.81	-0.3
1,606,674	-		RPSI07_RS05890	0.81	-1.6
1,606,795	+		RPSI07_RS05890	0.84	+0.2
1,606,796	-		RPSI07_RS05890	0.84	+0.8
1,606,886	+		RPSI07_RS05890	0.86	-0.3
1,606,937	+		RPSI07_RS05890	0.87	-0.9
1,606,988	-		RPSI07_RS05890	0.89	-1.1
1,607,525	-				-1.9
1,607,527	+				+1.4
1,607,546	+				+0.7
1,607,569	+				-0.0
1,607,585	+				+0.1
1,607,585	+				+0.8
1,607,586	-				+1.2
1,607,586	-				+0.4
1,607,616	+				+0.2
1,607,617	-				-0.2
1,607,794	+				+1.2
1,607,795	-				+0.4
1,607,821	-				+0.7
1,607,925	+				-0.1
1,607,925	+				+1.2
1,607,925	+				-0.3
1,607,925	+				+1.6
1,607,926	-				-0.5
1,607,926	-				+0.7
1,607,926	-				+0.6
1,607,926	-				+1.2
1,607,926	-				+1.0
1,607,951	-				+0.7
1,608,229	+		RPSI07_RS05895	0.27	-0.0
1,608,229	+		RPSI07_RS05895	0.27	+1.2
1,608,229	+		RPSI07_RS05895	0.27	+0.2
1,608,230	-		RPSI07_RS05895	0.27	+0.7
1,608,230	-		RPSI07_RS05895	0.27	-0.9
1,608,348	+		RPSI07_RS05895	0.35	+0.7