Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS03365 and RPSI07_RS03370 are separated by 506 nucleotides RPSI07_RS03370 and RPSI07_RS03375 are separated by 236 nucleotides
RPSI07_RS03365: RPSI07_RS03365 - GGDEF-domain containing protein, at 915,958 to 917,949
_RS03365
RPSI07_RS03370: RPSI07_RS03370 - malate dehydrogenase (quinone), at 918,456 to 920,111
_RS03370
RPSI07_RS03375: RPSI07_RS03375 - TetR/AcrR family transcriptional regulator, at 920,348 to 920,971
_RS03375
Position (kb) 918
919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 917.614 kb on + strand, within RPSI07_RS03365 at 917.629 kb on + strand, within RPSI07_RS03365 at 917.629 kb on + strand, within RPSI07_RS03365 at 917.630 kb on - strand, within RPSI07_RS03365 at 917.827 kb on + strand at 917.828 kb on - strand at 917.828 kb on - strand at 917.947 kb on + strand at 917.947 kb on + strand at 918.042 kb on + strand at 918.042 kb on + strand at 918.042 kb on + strand at 918.042 kb on + strand at 918.042 kb on + strand at 918.042 kb on + strand at 918.042 kb on + strand at 918.042 kb on + strand at 918.043 kb on - strand at 918.043 kb on - strand at 918.043 kb on - strand at 918.043 kb on - strand at 918.043 kb on - strand at 918.043 kb on - strand at 918.045 kb on + strand at 918.046 kb on - strand at 918.046 kb on - strand at 918.243 kb on + strand at 918.269 kb on + strand at 918.425 kb on - strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.429 kb on + strand at 918.430 kb on - strand at 918.430 kb on - strand at 918.430 kb on - strand at 918.430 kb on - strand at 918.430 kb on - strand at 918.430 kb on - strand at 918.430 kb on - strand at 918.470 kb on - strand at 918.475 kb on + strand at 918.476 kb on - strand at 918.717 kb on + strand, within RPSI07_RS03370 at 918.717 kb on + strand, within RPSI07_RS03370 at 918.717 kb on + strand, within RPSI07_RS03370 at 918.717 kb on + strand, within RPSI07_RS03370 at 918.717 kb on + strand, within RPSI07_RS03370 at 918.718 kb on - strand, within RPSI07_RS03370 at 918.718 kb on - strand, within RPSI07_RS03370 at 918.718 kb on - strand, within RPSI07_RS03370 at 918.718 kb on - strand, within RPSI07_RS03370 at 918.718 kb on - strand, within RPSI07_RS03370 at 918.788 kb on - strand, within RPSI07_RS03370 at 918.807 kb on + strand, within RPSI07_RS03370 at 918.807 kb on + strand, within RPSI07_RS03370 at 918.807 kb on + strand, within RPSI07_RS03370 at 918.916 kb on - strand, within RPSI07_RS03370 at 918.957 kb on + strand, within RPSI07_RS03370 at 918.957 kb on + strand, within RPSI07_RS03370 at 918.957 kb on + strand, within RPSI07_RS03370 at 918.958 kb on - strand, within RPSI07_RS03370 at 918.970 kb on - strand, within RPSI07_RS03370 at 919.098 kb on + strand, within RPSI07_RS03370 at 919.099 kb on - strand, within RPSI07_RS03370 at 919.099 kb on - strand, within RPSI07_RS03370 at 919.172 kb on + strand at 919.172 kb on + strand, within RPSI07_RS03370 at 919.188 kb on + strand, within RPSI07_RS03370 at 919.188 kb on + strand, within RPSI07_RS03370 at 919.188 kb on + strand, within RPSI07_RS03370 at 919.189 kb on - strand, within RPSI07_RS03370 at 919.189 kb on - strand, within RPSI07_RS03370 at 919.189 kb on - strand, within RPSI07_RS03370 at 919.189 kb on - strand, within RPSI07_RS03370 at 919.518 kb on + strand, within RPSI07_RS03370 at 919.519 kb on - strand, within RPSI07_RS03370 at 919.603 kb on - strand, within RPSI07_RS03370 at 919.659 kb on + strand, within RPSI07_RS03370 at 919.659 kb on + strand, within RPSI07_RS03370 at 919.659 kb on + strand, within RPSI07_RS03370 at 919.660 kb on - strand, within RPSI07_RS03370 at 919.929 kb on + strand, within RPSI07_RS03370 at 919.929 kb on + strand, within RPSI07_RS03370 at 919.929 kb on + strand, within RPSI07_RS03370 at 919.929 kb on + strand, within RPSI07_RS03370 at 919.966 kb on - strand at 919.966 kb on - strand at 920.109 kb on + strand at 920.109 kb on + strand at 920.109 kb on + strand at 920.110 kb on - strand at 920.382 kb on + strand at 920.396 kb on + strand at 920.396 kb on + strand at 920.397 kb on - strand at 920.397 kb on - strand at 920.397 kb on - strand at 920.397 kb on - strand at 920.397 kb on - strand at 920.397 kb on - strand at 920.490 kb on + strand, within RPSI07_RS03375 at 920.625 kb on - strand, within RPSI07_RS03375 at 920.700 kb on + strand, within RPSI07_RS03375 at 920.700 kb on + strand, within RPSI07_RS03375 at 920.700 kb on + strand, within RPSI07_RS03375 at 920.701 kb on - strand, within RPSI07_RS03375 at 920.701 kb on - strand, within RPSI07_RS03375 at 920.701 kb on - strand, within RPSI07_RS03375 at 920.701 kb on - strand, within RPSI07_RS03375 at 920.771 kb on + strand, within RPSI07_RS03375 at 920.771 kb on + strand, within RPSI07_RS03375 at 920.772 kb on - strand, within RPSI07_RS03375 at 920.772 kb on - strand, within RPSI07_RS03375 at 920.772 kb on - strand, within RPSI07_RS03375 at 920.832 kb on + strand, within RPSI07_RS03375 at 920.832 kb on + strand, within RPSI07_RS03375 at 920.832 kb on + strand, within RPSI07_RS03375 at 920.832 kb on + strand, within RPSI07_RS03375 at 920.832 kb on + strand, within RPSI07_RS03375 at 920.832 kb on + strand, within RPSI07_RS03375 at 920.833 kb on - strand, within RPSI07_RS03375 at 920.833 kb on - strand, within RPSI07_RS03375 at 920.833 kb on - strand, within RPSI07_RS03375 at 920.838 kb on + strand, within RPSI07_RS03375 at 920.838 kb on + strand, within RPSI07_RS03375 at 920.838 kb on + strand, within RPSI07_RS03375 at 920.838 kb on + strand, within RPSI07_RS03375 at 920.838 kb on + strand, within RPSI07_RS03375 at 920.838 kb on + strand, within RPSI07_RS03375 at 920.838 kb on + strand, within RPSI07_RS03375 at 920.839 kb on - strand, within RPSI07_RS03375 at 920.839 kb on - strand, within RPSI07_RS03375 at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.020 kb on + strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 917,614 + RPSI07_RS03365 0.83 -0.3 917,629 + RPSI07_RS03365 0.84 -1.2 917,629 + RPSI07_RS03365 0.84 -0.5 917,630 - RPSI07_RS03365 0.84 -0.2 917,827 + -2.1 917,828 - -0.4 917,828 - +0.5 917,947 + +1.8 917,947 + +2.1 918,042 + +0.8 918,042 + +2.1 918,042 + +0.9 918,042 + -1.5 918,042 + -0.5 918,042 + -0.4 918,042 + -1.5 918,042 + +1.6 918,043 - -0.2 918,043 - -1.1 918,043 - -1.8 918,043 - +0.2 918,043 - +0.5 918,043 - +0.5 918,045 + +0.8 918,046 - +0.5 918,046 - -0.1 918,243 + +0.1 918,269 + +0.4 918,425 - +0.1 918,429 + -0.5 918,429 + -0.0 918,429 + -0.0 918,429 + +0.2 918,429 + -0.6 918,429 + -0.1 918,429 + -1.1 918,429 + +0.9 918,429 + -1.4 918,429 + +0.1 918,430 - +1.2 918,430 - -1.2 918,430 - +1.0 918,430 - +0.5 918,430 - +1.3 918,430 - +0.3 918,430 - -0.5 918,470 - -0.7 918,475 + -0.5 918,476 - +0.5 918,717 + RPSI07_RS03370 0.16 +1.1 918,717 + RPSI07_RS03370 0.16 -0.2 918,717 + RPSI07_RS03370 0.16 +0.8 918,717 + RPSI07_RS03370 0.16 +1.5 918,717 + RPSI07_RS03370 0.16 -0.5 918,718 - RPSI07_RS03370 0.16 -1.1 918,718 - RPSI07_RS03370 0.16 -0.8 918,718 - RPSI07_RS03370 0.16 +0.3 918,718 - RPSI07_RS03370 0.16 +0.2 918,718 - RPSI07_RS03370 0.16 -0.3 918,788 - RPSI07_RS03370 0.20 +0.5 918,807 + RPSI07_RS03370 0.21 -0.5 918,807 + RPSI07_RS03370 0.21 +0.3 918,807 + RPSI07_RS03370 0.21 +0.5 918,916 - RPSI07_RS03370 0.28 +1.5 918,957 + RPSI07_RS03370 0.30 +0.1 918,957 + RPSI07_RS03370 0.30 +1.1 918,957 + RPSI07_RS03370 0.30 +1.0 918,958 - RPSI07_RS03370 0.30 +3.4 918,970 - RPSI07_RS03370 0.31 +0.1 919,098 + RPSI07_RS03370 0.39 +0.5 919,099 - RPSI07_RS03370 0.39 -0.8 919,099 - RPSI07_RS03370 0.39 +1.0 919,172 + +0.8 919,172 + RPSI07_RS03370 0.43 -0.5 919,188 + RPSI07_RS03370 0.44 +0.0 919,188 + RPSI07_RS03370 0.44 +2.3 919,188 + RPSI07_RS03370 0.44 +0.9 919,189 - RPSI07_RS03370 0.44 -2.1 919,189 - RPSI07_RS03370 0.44 +1.8 919,189 - RPSI07_RS03370 0.44 +0.5 919,189 - RPSI07_RS03370 0.44 +1.3 919,518 + RPSI07_RS03370 0.64 +0.5 919,519 - RPSI07_RS03370 0.64 +0.1 919,603 - RPSI07_RS03370 0.69 -0.7 919,659 + RPSI07_RS03370 0.73 +1.9 919,659 + RPSI07_RS03370 0.73 -0.9 919,659 + RPSI07_RS03370 0.73 +1.9 919,660 - RPSI07_RS03370 0.73 -0.1 919,929 + RPSI07_RS03370 0.89 -0.0 919,929 + RPSI07_RS03370 0.89 -1.3 919,929 + RPSI07_RS03370 0.89 -0.4 919,929 + RPSI07_RS03370 0.89 +0.4 919,966 - +0.7 919,966 - -1.1 920,109 + +1.1 920,109 + -0.9 920,109 + -1.1 920,110 - -1.9 920,382 + +0.5 920,396 + -0.2 920,396 + +2.3 920,397 - -0.5 920,397 - +0.4 920,397 - +1.1 920,397 - +2.5 920,397 - +1.5 920,397 - +2.3 920,490 + RPSI07_RS03375 0.23 -0.5 920,625 - RPSI07_RS03375 0.44 +1.3 920,700 + RPSI07_RS03375 0.56 -0.5 920,700 + RPSI07_RS03375 0.56 -0.6 920,700 + RPSI07_RS03375 0.56 -0.5 920,701 - RPSI07_RS03375 0.57 -0.5 920,701 - RPSI07_RS03375 0.57 +0.1 920,701 - RPSI07_RS03375 0.57 -0.5 920,701 - RPSI07_RS03375 0.57 -1.5 920,771 + RPSI07_RS03375 0.68 +1.2 920,771 + RPSI07_RS03375 0.68 +2.1 920,772 - RPSI07_RS03375 0.68 +1.9 920,772 - RPSI07_RS03375 0.68 +0.6 920,772 - RPSI07_RS03375 0.68 +1.4 920,832 + RPSI07_RS03375 0.78 +2.2 920,832 + RPSI07_RS03375 0.78 -0.7 920,832 + RPSI07_RS03375 0.78 +0.0 920,832 + RPSI07_RS03375 0.78 -0.1 920,832 + RPSI07_RS03375 0.78 +0.8 920,832 + RPSI07_RS03375 0.78 -0.3 920,833 - RPSI07_RS03375 0.78 -0.1 920,833 - RPSI07_RS03375 0.78 +0.4 920,833 - RPSI07_RS03375 0.78 +2.7 920,838 + RPSI07_RS03375 0.79 -0.6 920,838 + RPSI07_RS03375 0.79 -0.7 920,838 + RPSI07_RS03375 0.79 +0.8 920,838 + RPSI07_RS03375 0.79 +1.6 920,838 + RPSI07_RS03375 0.79 -0.1 920,838 + RPSI07_RS03375 0.79 -1.5 920,838 + RPSI07_RS03375 0.79 +0.2 920,839 - RPSI07_RS03375 0.79 -0.1 920,839 - RPSI07_RS03375 0.79 -1.0 921,020 + -2.2 921,020 + +0.7 921,020 + -0.4 921,020 + +0.5 921,020 + -0.7 921,020 + -0.1 921,020 + +1.7 921,020 + -1.0 921,020 + -2.1 921,020 + +1.0 921,020 + +2.8 921,020 + -0.5 921,020 + -1.7 921,020 + +1.6 921,020 + +0.7 921,020 + +0.8 921,020 + +0.7 921,020 + -0.1 921,020 + +1.2 921,020 + -0.5 921,020 + -0.0 921,021 - -0.4 921,021 - -1.5 921,021 - -0.2 921,021 - +1.5 921,021 - +1.8 921,021 - +1.1 921,021 - -0.9 921,021 - +1.0 921,021 - +0.1 921,021 - -0.5 921,021 - -0.3 921,021 - +0.8 921,021 - -1.2 921,021 - +1.3 921,021 - -1.5 921,021 - -1.8 921,021 - +2.7 921,021 - +0.5 921,021 - -2.2 921,021 - +0.7 921,021 - +0.2
Or see this region's nucleotide sequence