Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS02670 and RPSI07_RS02675 are separated by 107 nucleotides RPSI07_RS02675 and RPSI07_RS02680 are separated by 459 nucleotides RPSI07_RS02680 and RPSI07_RS02685 are separated by 37 nucleotides RPSI07_RS02685 and RPSI07_RS02690 are separated by 7 nucleotides
RPSI07_RS02670: RPSI07_RS02670 - ABC transporter ATP-binding protein, at 754,937 to 755,680
_RS02670
RPSI07_RS02675: RPSI07_RS02675 - hypothetical protein, at 755,788 to 756,108
_RS02675
RPSI07_RS02680: RPSI07_RS02680 - cytochrome P450, at 756,568 to 757,764
_RS02680
RPSI07_RS02685: RPSI07_RS02685 - EamA/RhaT family transporter, at 757,802 to 758,713
_RS02685
RPSI07_RS02690: RPSI07_RS02690 - membrane protein, at 758,721 to 759,533
_RS02690
Position (kb) 756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 755.568 kb on - strand, within RPSI07_RS02670 at 755.568 kb on - strand, within RPSI07_RS02670 at 755.573 kb on + strand, within RPSI07_RS02670 at 755.573 kb on + strand, within RPSI07_RS02670 at 755.651 kb on + strand at 755.651 kb on + strand at 755.651 kb on + strand at 755.652 kb on - strand at 755.679 kb on - strand at 755.679 kb on - strand at 755.909 kb on + strand, within RPSI07_RS02675 at 755.909 kb on + strand, within RPSI07_RS02675 at 755.909 kb on + strand, within RPSI07_RS02675 at 755.910 kb on - strand, within RPSI07_RS02675 at 755.910 kb on - strand, within RPSI07_RS02675 at 755.910 kb on - strand, within RPSI07_RS02675 at 755.912 kb on + strand, within RPSI07_RS02675 at 755.912 kb on + strand, within RPSI07_RS02675 at 755.912 kb on + strand, within RPSI07_RS02675 at 755.912 kb on + strand, within RPSI07_RS02675 at 755.912 kb on + strand, within RPSI07_RS02675 at 755.913 kb on - strand, within RPSI07_RS02675 at 755.913 kb on - strand, within RPSI07_RS02675 at 755.916 kb on - strand, within RPSI07_RS02675 at 755.916 kb on - strand, within RPSI07_RS02675 at 755.975 kb on + strand, within RPSI07_RS02675 at 755.975 kb on + strand, within RPSI07_RS02675 at 755.976 kb on - strand, within RPSI07_RS02675 at 755.996 kb on + strand, within RPSI07_RS02675 at 755.996 kb on + strand, within RPSI07_RS02675 at 755.996 kb on + strand, within RPSI07_RS02675 at 755.996 kb on + strand, within RPSI07_RS02675 at 755.997 kb on - strand, within RPSI07_RS02675 at 755.997 kb on - strand, within RPSI07_RS02675 at 755.997 kb on - strand, within RPSI07_RS02675 at 755.997 kb on - strand, within RPSI07_RS02675 at 756.097 kb on + strand at 756.097 kb on + strand at 756.097 kb on + strand at 756.097 kb on + strand at 756.097 kb on + strand at 756.098 kb on - strand at 756.098 kb on - strand at 756.098 kb on - strand at 756.098 kb on - strand at 756.164 kb on - strand at 756.169 kb on - strand at 756.173 kb on - strand at 756.182 kb on + strand at 756.183 kb on - strand at 756.192 kb on + strand at 756.193 kb on - strand at 756.321 kb on + strand at 756.321 kb on + strand at 756.322 kb on - strand at 756.322 kb on - strand at 756.322 kb on - strand at 756.322 kb on - strand at 756.363 kb on + strand at 756.402 kb on + strand at 756.402 kb on + strand at 756.402 kb on + strand at 756.403 kb on - strand at 756.403 kb on - strand at 756.493 kb on - strand at 756.514 kb on + strand at 756.515 kb on - strand at 756.623 kb on - strand at 756.688 kb on + strand, within RPSI07_RS02680 at 756.688 kb on + strand, within RPSI07_RS02680 at 756.736 kb on + strand, within RPSI07_RS02680 at 756.736 kb on + strand, within RPSI07_RS02680 at 756.736 kb on + strand, within RPSI07_RS02680 at 756.737 kb on - strand, within RPSI07_RS02680 at 756.737 kb on - strand, within RPSI07_RS02680 at 756.737 kb on - strand, within RPSI07_RS02680 at 756.737 kb on - strand, within RPSI07_RS02680 at 756.737 kb on - strand, within RPSI07_RS02680 at 756.737 kb on - strand, within RPSI07_RS02680 at 756.744 kb on + strand, within RPSI07_RS02680 at 756.744 kb on + strand at 756.744 kb on + strand, within RPSI07_RS02680 at 756.745 kb on - strand, within RPSI07_RS02680 at 756.745 kb on - strand, within RPSI07_RS02680 at 756.745 kb on - strand, within RPSI07_RS02680 at 756.745 kb on - strand, within RPSI07_RS02680 at 756.838 kb on - strand, within RPSI07_RS02680 at 757.126 kb on + strand, within RPSI07_RS02680 at 757.144 kb on + strand, within RPSI07_RS02680 at 757.145 kb on - strand, within RPSI07_RS02680 at 757.145 kb on - strand, within RPSI07_RS02680 at 757.386 kb on + strand, within RPSI07_RS02680 at 757.415 kb on + strand, within RPSI07_RS02680 at 757.763 kb on - strand at 757.804 kb on - strand at 758.028 kb on + strand, within RPSI07_RS02685 at 758.028 kb on + strand, within RPSI07_RS02685 at 758.041 kb on - strand, within RPSI07_RS02685 at 758.115 kb on + strand, within RPSI07_RS02685 at 758.116 kb on - strand, within RPSI07_RS02685 at 758.116 kb on - strand, within RPSI07_RS02685 at 758.116 kb on - strand, within RPSI07_RS02685 at 758.214 kb on + strand, within RPSI07_RS02685 at 758.214 kb on + strand, within RPSI07_RS02685 at 758.215 kb on - strand, within RPSI07_RS02685 at 758.228 kb on + strand, within RPSI07_RS02685 at 758.229 kb on - strand, within RPSI07_RS02685 at 758.296 kb on - strand, within RPSI07_RS02685 at 758.439 kb on + strand, within RPSI07_RS02685 at 758.440 kb on - strand, within RPSI07_RS02685 at 758.463 kb on + strand, within RPSI07_RS02685 at 758.463 kb on + strand, within RPSI07_RS02685 at 758.463 kb on + strand, within RPSI07_RS02685 at 758.464 kb on - strand, within RPSI07_RS02685 at 758.464 kb on - strand, within RPSI07_RS02685 at 758.464 kb on - strand, within RPSI07_RS02685 at 758.464 kb on - strand, within RPSI07_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 755,568 - RPSI07_RS02670 0.85 +1.0 755,568 - RPSI07_RS02670 0.85 +0.7 755,573 + RPSI07_RS02670 0.85 +1.1 755,573 + RPSI07_RS02670 0.85 -0.6 755,651 + +1.1 755,651 + -0.3 755,651 + -1.0 755,652 - +0.1 755,679 - -0.8 755,679 - -0.9 755,909 + RPSI07_RS02675 0.38 +1.6 755,909 + RPSI07_RS02675 0.38 +2.1 755,909 + RPSI07_RS02675 0.38 -1.3 755,910 - RPSI07_RS02675 0.38 +0.1 755,910 - RPSI07_RS02675 0.38 +0.5 755,910 - RPSI07_RS02675 0.38 +0.0 755,912 + RPSI07_RS02675 0.39 +0.4 755,912 + RPSI07_RS02675 0.39 +0.7 755,912 + RPSI07_RS02675 0.39 -1.7 755,912 + RPSI07_RS02675 0.39 -0.5 755,912 + RPSI07_RS02675 0.39 -0.7 755,913 - RPSI07_RS02675 0.39 +1.1 755,913 - RPSI07_RS02675 0.39 +2.1 755,916 - RPSI07_RS02675 0.40 -3.5 755,916 - RPSI07_RS02675 0.40 -0.8 755,975 + RPSI07_RS02675 0.58 +1.0 755,975 + RPSI07_RS02675 0.58 -0.7 755,976 - RPSI07_RS02675 0.59 +1.3 755,996 + RPSI07_RS02675 0.65 +2.0 755,996 + RPSI07_RS02675 0.65 -0.5 755,996 + RPSI07_RS02675 0.65 -2.1 755,996 + RPSI07_RS02675 0.65 +2.3 755,997 - RPSI07_RS02675 0.65 -0.2 755,997 - RPSI07_RS02675 0.65 +1.0 755,997 - RPSI07_RS02675 0.65 +0.4 755,997 - RPSI07_RS02675 0.65 +0.9 756,097 + +1.5 756,097 + -1.7 756,097 + +1.1 756,097 + -0.6 756,097 + -0.6 756,098 - +0.5 756,098 - +1.9 756,098 - +2.4 756,098 - +2.8 756,164 - -0.5 756,169 - -0.4 756,173 - -0.9 756,182 + +1.1 756,183 - -0.9 756,192 + +0.7 756,193 - +1.5 756,321 + +0.2 756,321 + +1.5 756,322 - +0.4 756,322 - +1.2 756,322 - -0.5 756,322 - -0.3 756,363 + +1.9 756,402 + +0.1 756,402 + -0.2 756,402 + +1.5 756,403 - +1.5 756,403 - -0.1 756,493 - +0.3 756,514 + -2.2 756,515 - -1.1 756,623 - +0.6 756,688 + RPSI07_RS02680 0.10 -0.2 756,688 + RPSI07_RS02680 0.10 -0.5 756,736 + RPSI07_RS02680 0.14 -0.0 756,736 + RPSI07_RS02680 0.14 -0.5 756,736 + RPSI07_RS02680 0.14 +0.8 756,737 - RPSI07_RS02680 0.14 +1.5 756,737 - RPSI07_RS02680 0.14 -0.0 756,737 - RPSI07_RS02680 0.14 -0.9 756,737 - RPSI07_RS02680 0.14 -0.8 756,737 - RPSI07_RS02680 0.14 -0.7 756,737 - RPSI07_RS02680 0.14 -0.0 756,744 + RPSI07_RS02680 0.15 -0.0 756,744 + -2.3 756,744 + RPSI07_RS02680 0.15 +0.9 756,745 - RPSI07_RS02680 0.15 -1.1 756,745 - RPSI07_RS02680 0.15 +1.8 756,745 - RPSI07_RS02680 0.15 -1.5 756,745 - RPSI07_RS02680 0.15 +0.3 756,838 - RPSI07_RS02680 0.23 +1.4 757,126 + RPSI07_RS02680 0.47 -0.1 757,144 + RPSI07_RS02680 0.48 -0.5 757,145 - RPSI07_RS02680 0.48 -0.5 757,145 - RPSI07_RS02680 0.48 +0.9 757,386 + RPSI07_RS02680 0.68 +2.1 757,415 + RPSI07_RS02680 0.71 +1.6 757,763 - +0.5 757,804 - +0.5 758,028 + RPSI07_RS02685 0.25 +1.1 758,028 + RPSI07_RS02685 0.25 -1.7 758,041 - RPSI07_RS02685 0.26 +1.2 758,115 + RPSI07_RS02685 0.34 +1.1 758,116 - RPSI07_RS02685 0.34 +0.7 758,116 - RPSI07_RS02685 0.34 -2.1 758,116 - RPSI07_RS02685 0.34 +0.5 758,214 + RPSI07_RS02685 0.45 +2.1 758,214 + RPSI07_RS02685 0.45 -0.9 758,215 - RPSI07_RS02685 0.45 -2.7 758,228 + RPSI07_RS02685 0.47 +1.7 758,229 - RPSI07_RS02685 0.47 +1.1 758,296 - RPSI07_RS02685 0.54 +1.8 758,439 + RPSI07_RS02685 0.70 +1.3 758,440 - RPSI07_RS02685 0.70 +1.0 758,463 + RPSI07_RS02685 0.72 +1.4 758,463 + RPSI07_RS02685 0.72 -0.4 758,463 + RPSI07_RS02685 0.72 +1.3 758,464 - RPSI07_RS02685 0.73 +0.8 758,464 - RPSI07_RS02685 0.73 +2.0 758,464 - RPSI07_RS02685 0.73 -0.9 758,464 - RPSI07_RS02685 0.73 +0.9
Or see this region's nucleotide sequence