Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS02495

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS02485 and RPSI07_RS02490 are separated by 9 nucleotidesRPSI07_RS02490 and RPSI07_RS02495 are separated by 9 nucleotidesRPSI07_RS02495 and RPSI07_RS02500 are separated by 89 nucleotides RPSI07_RS02485: RPSI07_RS02485 - magnesium and cobalt transport protein CorA, at 710,107 to 711,078 _RS02485 RPSI07_RS02490: RPSI07_RS02490 - DNA-3-methyladenine glycosylase I, at 711,088 to 711,660 _RS02490 RPSI07_RS02495: RPSI07_RS02495 - MFS transporter, at 711,670 to 712,893 _RS02495 RPSI07_RS02500: RPSI07_RS02500 - DUF2520 domain-containing protein, at 712,983 to 713,867 _RS02500 Position (kb) 711 712 713Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 710.771 kb on - strand, within RPSI07_RS02485at 710.771 kb on - strand, within RPSI07_RS02485at 710.771 kb on - strand, within RPSI07_RS02485at 710.953 kb on + strand, within RPSI07_RS02485at 710.954 kb on - strand, within RPSI07_RS02485at 710.954 kb on - strand, within RPSI07_RS02485at 710.954 kb on - strand, within RPSI07_RS02485at 710.954 kb on - strand, within RPSI07_RS02485at 711.001 kb on + strandat 711.010 kb on + strandat 711.012 kb on - strandat 711.047 kb on - strandat 711.076 kb on + strandat 711.076 kb on + strandat 711.076 kb on + strandat 711.076 kb on + strandat 711.076 kb on + strandat 711.077 kb on - strandat 711.133 kb on + strandat 711.133 kb on + strandat 711.134 kb on - strandat 711.181 kb on + strand, within RPSI07_RS02490at 711.181 kb on + strand, within RPSI07_RS02490at 711.182 kb on - strand, within RPSI07_RS02490at 711.182 kb on - strand, within RPSI07_RS02490at 711.482 kb on - strand, within RPSI07_RS02490at 711.482 kb on - strand, within RPSI07_RS02490at 711.574 kb on + strand, within RPSI07_RS02490at 711.574 kb on + strand, within RPSI07_RS02490at 711.575 kb on - strand, within RPSI07_RS02490at 711.803 kb on + strand, within RPSI07_RS02495at 711.803 kb on + strand, within RPSI07_RS02495at 711.803 kb on + strand, within RPSI07_RS02495at 711.804 kb on - strand, within RPSI07_RS02495at 711.828 kb on - strand, within RPSI07_RS02495at 711.828 kb on - strand, within RPSI07_RS02495at 711.977 kb on + strand, within RPSI07_RS02495at 711.978 kb on - strand, within RPSI07_RS02495at 711.978 kb on - strand, within RPSI07_RS02495at 711.978 kb on - strand, within RPSI07_RS02495at 712.181 kb on + strand, within RPSI07_RS02495at 712.181 kb on + strand, within RPSI07_RS02495at 712.181 kb on + strand, within RPSI07_RS02495at 712.208 kb on + strand, within RPSI07_RS02495at 712.208 kb on + strand, within RPSI07_RS02495at 712.208 kb on + strand, within RPSI07_RS02495at 712.208 kb on + strand, within RPSI07_RS02495at 712.208 kb on + strand, within RPSI07_RS02495at 712.208 kb on + strand, within RPSI07_RS02495at 712.208 kb on + strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.209 kb on - strand, within RPSI07_RS02495at 712.436 kb on + strand, within RPSI07_RS02495at 712.979 kb on - strandat 712.979 kb on - strandat 712.984 kb on + strandat 712.985 kb on - strandat 713.087 kb on - strand, within RPSI07_RS02500at 713.087 kb on - strand, within RPSI07_RS02500at 713.326 kb on + strand, within RPSI07_RS02500at 713.326 kb on + strand, within RPSI07_RS02500at 713.327 kb on - strand, within RPSI07_RS02500at 713.345 kb on - strand, within RPSI07_RS02500at 713.345 kb on - strand, within RPSI07_RS02500at 713.608 kb on - strand, within RPSI07_RS02500at 713.608 kb on - strand, within RPSI07_RS02500

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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710,771 - RPSI07_RS02485 0.68 -1.5
710,771 - RPSI07_RS02485 0.68 -0.9
710,771 - RPSI07_RS02485 0.68 +0.3
710,953 + RPSI07_RS02485 0.87 +0.8
710,954 - RPSI07_RS02485 0.87 +1.2
710,954 - RPSI07_RS02485 0.87 +0.3
710,954 - RPSI07_RS02485 0.87 +0.1
710,954 - RPSI07_RS02485 0.87 +1.1
711,001 + -0.0
711,010 + +0.2
711,012 - -0.7
711,047 - +0.8
711,076 + -0.9
711,076 + +1.0
711,076 + -0.8
711,076 + -1.1
711,076 + +3.2
711,077 - -2.0
711,133 + -0.3
711,133 + +1.1
711,134 - -0.2
711,181 + RPSI07_RS02490 0.16 -1.2
711,181 + RPSI07_RS02490 0.16 -1.2
711,182 - RPSI07_RS02490 0.16 -0.4
711,182 - RPSI07_RS02490 0.16 +2.3
711,482 - RPSI07_RS02490 0.69 -1.0
711,482 - RPSI07_RS02490 0.69 -0.7
711,574 + RPSI07_RS02490 0.85 -0.4
711,574 + RPSI07_RS02490 0.85 -0.6
711,575 - RPSI07_RS02490 0.85 +0.2
711,803 + RPSI07_RS02495 0.11 -2.0
711,803 + RPSI07_RS02495 0.11 -0.8
711,803 + RPSI07_RS02495 0.11 -1.2
711,804 - RPSI07_RS02495 0.11 +3.8
711,828 - RPSI07_RS02495 0.13 +1.0
711,828 - RPSI07_RS02495 0.13 +0.9
711,977 + RPSI07_RS02495 0.25 -0.2
711,978 - RPSI07_RS02495 0.25 -0.1
711,978 - RPSI07_RS02495 0.25 +0.6
711,978 - RPSI07_RS02495 0.25 -0.4
712,181 + RPSI07_RS02495 0.42 +1.1
712,181 + RPSI07_RS02495 0.42 -1.5
712,181 + RPSI07_RS02495 0.42 -0.8
712,208 + RPSI07_RS02495 0.44 +0.1
712,208 + RPSI07_RS02495 0.44 -0.5
712,208 + RPSI07_RS02495 0.44 +0.7
712,208 + RPSI07_RS02495 0.44 -0.5
712,208 + RPSI07_RS02495 0.44 -2.0
712,208 + RPSI07_RS02495 0.44 +0.7
712,208 + RPSI07_RS02495 0.44 -0.9
712,209 - RPSI07_RS02495 0.44 +1.1
712,209 - RPSI07_RS02495 0.44 -1.5
712,209 - RPSI07_RS02495 0.44 -2.2
712,209 - RPSI07_RS02495 0.44 -0.2
712,209 - RPSI07_RS02495 0.44 +0.5
712,209 - RPSI07_RS02495 0.44 -1.1
712,209 - RPSI07_RS02495 0.44 -2.1
712,209 - RPSI07_RS02495 0.44 -0.3
712,209 - RPSI07_RS02495 0.44 +0.2
712,436 + RPSI07_RS02495 0.63 -1.4
712,979 - -0.9
712,979 - +0.3
712,984 + +0.4
712,985 - +1.1
713,087 - RPSI07_RS02500 0.12 +3.3
713,087 - RPSI07_RS02500 0.12 +0.5
713,326 + RPSI07_RS02500 0.39 -1.4
713,326 + RPSI07_RS02500 0.39 +1.6
713,327 - RPSI07_RS02500 0.39 +0.2
713,345 - RPSI07_RS02500 0.41 -1.3
713,345 - RPSI07_RS02500 0.41 +0.8
713,608 - RPSI07_RS02500 0.71 +2.0
713,608 - RPSI07_RS02500 0.71 -1.1

Or see this region's nucleotide sequence