Strain Fitness in Pseudomonas simiae WCS417 around PS417_04580

Experiment: methylglyoxal 0.032 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_04570 and PS417_04575 overlap by 4 nucleotidesPS417_04575 and PS417_04580 are separated by 92 nucleotidesPS417_04580 and PS417_04585 overlap by 1 nucleotides PS417_04570: PS417_04570 - phospholipid-binding protein, at 1,012,471 to 1,013,052 _04570 PS417_04575: PS417_04575 - DnaA initiator-associating protein DiaA, at 1,013,049 to 1,013,642 _04575 PS417_04580: PS417_04580 - hypothetical protein, at 1,013,735 to 1,014,106 _04580 PS417_04585: PS417_04585 - hypothetical protein, at 1,014,106 to 1,015,917 _04585 Position (kb) 1013 1014 1015Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1013.655 kb on - strandat 1013.655 kb on - strandat 1013.655 kb on - strandat 1013.955 kb on - strand, within PS417_04580at 1013.955 kb on - strand, within PS417_04580at 1013.955 kb on - strand, within PS417_04580at 1013.957 kb on + strand, within PS417_04580at 1013.963 kb on - strand, within PS417_04580at 1014.001 kb on + strand, within PS417_04580at 1014.002 kb on - strand, within PS417_04580at 1014.005 kb on + strand, within PS417_04580at 1014.890 kb on + strand, within PS417_04585at 1014.891 kb on - strand, within PS417_04585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
remove
1,013,655 - -0.6
1,013,655 - +0.1
1,013,655 - +0.5
1,013,955 - PS417_04580 0.59 +1.8
1,013,955 - PS417_04580 0.59 -4.1
1,013,955 - PS417_04580 0.59 +0.6
1,013,957 + PS417_04580 0.60 +4.8
1,013,963 - PS417_04580 0.61 -0.2
1,014,001 + PS417_04580 0.72 +4.6
1,014,002 - PS417_04580 0.72 -2.4
1,014,005 + PS417_04580 0.73 +3.6
1,014,890 + PS417_04585 0.43 -1.9
1,014,891 - PS417_04585 0.43 +1.5

Or see this region's nucleotide sequence