Strain Fitness in Pseudomonas simiae WCS417 around PS417_04540

Experiment: methylglyoxal 0.032 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.032 vol%
1,001,547	-				-1.0
1,001,547	-				-2.2
1,001,584	+				-0.7
1,001,584	+				+0.4
1,001,584	+				-1.1
1,001,585	-				-0.2
1,001,602	-				-0.6
1,001,638	+				+0.9
1,001,639	-				-0.4
1,001,850	+		PS417_04535	0.40	-0.2
1,001,851	-		PS417_04535	0.40	+2.8
1,001,851	-		PS417_04535	0.40	+0.4
1,002,202	+				-0.3
1,002,228	+				-1.1
1,002,378	+				+0.2
1,002,378	+				-1.6
1,002,430	+				-1.1
1,002,431	-				-1.3
1,002,431	-				-1.7
1,002,475	+				+1.2
1,002,476	-				+2.7
1,002,476	-				+1.7
1,002,488	+				+1.4
1,002,488	+				+0.5
1,002,489	-				+0.8
1,002,619	-				-0.8
1,002,813	+		PS417_04540	0.19	+1.3
1,002,814	-		PS417_04540	0.19	-2.6
1,002,972	+		PS417_04540	0.29	+0.1
1,002,973	-		PS417_04540	0.29	+0.6
1,003,005	+		PS417_04540	0.31	-2.3
1,003,006	-		PS417_04540	0.31	-1.3
1,003,006	-		PS417_04540	0.31	-1.5
1,003,050	+		PS417_04540	0.33	-0.1
1,003,050	+		PS417_04540	0.33	-3.3
1,003,051	-		PS417_04540	0.33	+0.1
1,003,086	+		PS417_04540	0.35	+0.1
1,003,086	+		PS417_04540	0.35	-3.0
1,003,087	-		PS417_04540	0.36	+0.0
1,003,087	-		PS417_04540	0.36	-0.9
1,003,120	+		PS417_04540	0.37	-1.0
1,003,120	+		PS417_04540	0.37	-0.1
1,003,120	+		PS417_04540	0.37	-0.6
1,003,121	-		PS417_04540	0.38	-0.2
1,003,121	-		PS417_04540	0.38	+0.9
1,003,121	-		PS417_04540	0.38	-1.3
1,003,121	-		PS417_04540	0.38	+0.4
1,003,121	-		PS417_04540	0.38	-1.9
1,003,121	-		PS417_04540	0.38	-3.6
1,003,182	+		PS417_04540	0.41	-0.8
1,003,182	+		PS417_04540	0.41	-1.3
1,003,182	+		PS417_04540	0.41	+0.5
1,003,182	+		PS417_04540	0.41	-2.7
1,003,182	+		PS417_04540	0.41	+0.9
1,003,182	+		PS417_04540	0.41	+0.1
1,003,183	-		PS417_04540	0.41	+1.5
1,003,230	+		PS417_04540	0.44	+1.4
1,003,231	-		PS417_04540	0.44	-1.4
1,003,231	-		PS417_04540	0.44	-0.7
1,003,433	+		PS417_04540	0.56	-1.6
1,003,433	+		PS417_04540	0.56	+0.7
1,003,434	-		PS417_04540	0.56	-0.4
1,003,434	-		PS417_04540	0.56	-2.1
1,003,441	-		PS417_04540	0.57	-0.4
1,003,570	-		PS417_04540	0.64	-0.7
1,003,701	+		PS417_04540	0.72	+0.0
1,003,701	+		PS417_04540	0.72	-0.3
1,003,704	+				+3.1
1,003,704	+		PS417_04540	0.72	-1.1
1,003,704	+		PS417_04540	0.72	-0.0
1,003,705	-		PS417_04540	0.72	-0.6
1,003,897	+		PS417_04540	0.84	-1.8
1,003,898	-		PS417_04540	0.84	-2.4
1,003,976	-		PS417_04540	0.88	-0.1
1,004,112	-				-3.4
1,004,210	-				+1.2
1,004,222	+				+1.0
1,004,222	+				-1.6
1,004,222	+				+0.5
1,004,222	+				+0.4
1,004,223	-				+1.9
1,004,223	-				+0.5
1,004,223	-				+0.0
1,004,223	-				+1.1
1,004,338	+				-0.1
1,004,352	+				-0.7
1,004,353	-				-2.7
1,004,354	+				+0.4
1,004,355	-				+2.5
1,004,445	+				-2.7
1,004,476	+				-0.3
1,004,482	+				-1.3
1,004,567	-				-0.5
1,004,567	-				-2.7
1,004,567	-				+2.4
1,004,782	+		PS417_04545	0.15	+3.1
1,004,837	+		PS417_04545	0.18	+1.4
1,004,837	+		PS417_04545	0.18	+1.1
1,004,838	-		PS417_04545	0.18	-2.4
1,004,838	-		PS417_04545	0.18	-0.0
1,004,838	-		PS417_04545	0.18	+0.7
1,004,951	+		PS417_04545	0.24	-0.8
1,004,951	+		PS417_04545	0.24	-0.1
1,004,952	-		PS417_04545	0.24	+0.1
1,004,960	+		PS417_04545	0.24	+0.4
1,004,961	-		PS417_04545	0.25	-0.7
1,004,961	-		PS417_04545	0.25	-3.1
1,004,988	+		PS417_04545	0.26	+0.3
1,005,025	+		PS417_04545	0.28	-1.6
1,005,025	+		PS417_04545	0.28	-2.1
1,005,026	-		PS417_04545	0.28	-1.6
1,005,125	-		PS417_04545	0.33	-3.6
1,005,131	+		PS417_04545	0.34	-0.4
1,005,131	+		PS417_04545	0.34	+0.7
1,005,131	+		PS417_04545	0.34	-0.9
1,005,131	+		PS417_04545	0.34	+0.1
1,005,131	+		PS417_04545	0.34	+2.5
1,005,131	+		PS417_04545	0.34	+1.3
1,005,131	+		PS417_04545	0.34	-1.0
1,005,131	+		PS417_04545	0.34	+0.2
1,005,131	+		PS417_04545	0.34	-1.6
1,005,132	-		PS417_04545	0.34	+0.9
1,005,132	-		PS417_04545	0.34	-1.1
1,005,132	-		PS417_04545	0.34	+0.7