Strain Fitness in Pseudomonas simiae WCS417 around PS417_04440

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04430 and PS417_04435 are separated by 2 nucleotidesPS417_04435 and PS417_04440 are separated by 164 nucleotidesPS417_04440 and PS417_04445 are separated by 3 nucleotidesPS417_04445 and PS417_04450 are separated by 35 nucleotides PS417_04430: PS417_04430 - uracil transporter, at 984,521 to 985,795 _04430 PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436 _04435 PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158 _04440 PS417_04445: PS417_04445 - cupin, at 987,162 to 987,629 _04445 PS417_04450: PS417_04450 - hypothetical protein, at 987,665 to 988,150 _04450 Position (kb) 986 987 988Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 985.862 kb on + strand, within PS417_04435at 985.862 kb on + strand, within PS417_04435at 985.862 kb on + strand, within PS417_04435at 985.863 kb on - strand, within PS417_04435at 985.901 kb on + strand, within PS417_04435at 985.939 kb on + strand, within PS417_04435at 985.940 kb on - strand, within PS417_04435at 986.099 kb on + strand, within PS417_04435at 986.099 kb on + strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.176 kb on + strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.233 kb on - strand, within PS417_04435at 986.283 kb on - strand, within PS417_04435at 986.315 kb on + strand, within PS417_04435at 986.316 kb on - strand, within PS417_04435at 986.316 kb on - strand, within PS417_04435at 986.367 kb on + strand, within PS417_04435at 986.368 kb on - strand, within PS417_04435at 986.385 kb on + strandat 986.386 kb on - strandat 986.477 kb on + strandat 986.478 kb on - strandat 986.500 kb on + strandat 986.500 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.503 kb on - strandat 986.510 kb on + strandat 986.510 kb on + strandat 986.511 kb on - strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.555 kb on + strandat 986.555 kb on + strandat 986.655 kb on + strandat 986.814 kb on + strand, within PS417_04440at 987.055 kb on - strand, within PS417_04440at 987.055 kb on - strand, within PS417_04440at 987.105 kb on + strandat 987.114 kb on + strandat 987.138 kb on + strandat 987.156 kb on + strandat 987.156 kb on + strandat 987.156 kb on + strandat 987.157 kb on - strandat 987.157 kb on - strandat 987.303 kb on + strand, within PS417_04445at 987.303 kb on + strand, within PS417_04445at 987.303 kb on + strand, within PS417_04445at 987.303 kb on + strand, within PS417_04445at 987.304 kb on - strand, within PS417_04445at 987.304 kb on - strand, within PS417_04445at 987.304 kb on - strand, within PS417_04445at 987.304 kb on - strand, within PS417_04445at 987.597 kb on + strandat 987.632 kb on + strandat 987.679 kb on - strandat 987.818 kb on - strand, within PS417_04450at 987.818 kb on - strand, within PS417_04450at 987.818 kb on - strand, within PS417_04450at 987.989 kb on + strand, within PS417_04450at 987.990 kb on - strand, within PS417_04450at 987.998 kb on - strand, within PS417_04450at 988.038 kb on - strand, within PS417_04450at 988.076 kb on + strand, within PS417_04450at 988.076 kb on + strand, within PS417_04450at 988.076 kb on + strand, within PS417_04450at 988.076 kb on + strand, within PS417_04450at 988.077 kb on - strand, within PS417_04450at 988.077 kb on - strand, within PS417_04450at 988.081 kb on - strand, within PS417_04450at 988.095 kb on - strand, within PS417_04450at 988.108 kb on + strandat 988.108 kb on + strandat 988.109 kb on - strandat 988.109 kb on - strandat 988.122 kb on + strandat 988.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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985,862 + PS417_04435 0.10 -1.3
985,862 + PS417_04435 0.10 -3.7
985,862 + PS417_04435 0.10 -0.3
985,863 - PS417_04435 0.10 -2.6
985,901 + PS417_04435 0.16 +0.9
985,939 + PS417_04435 0.22 +0.1
985,940 - PS417_04435 0.22 -2.8
986,099 + PS417_04435 0.47 -0.6
986,099 + PS417_04435 0.47 -1.2
986,100 - PS417_04435 0.47 -2.3
986,100 - PS417_04435 0.47 -1.0
986,100 - PS417_04435 0.47 -0.6
986,100 - PS417_04435 0.47 -3.5
986,176 + PS417_04435 0.59 -1.1
986,177 - PS417_04435 0.59 +0.1
986,177 - PS417_04435 0.59 -1.3
986,177 - PS417_04435 0.59 +0.3
986,233 - PS417_04435 0.68 +0.5
986,283 - PS417_04435 0.76 -0.7
986,315 + PS417_04435 0.81 -1.4
986,316 - PS417_04435 0.81 -3.8
986,316 - PS417_04435 0.81 -4.1
986,367 + PS417_04435 0.89 -1.1
986,368 - PS417_04435 0.89 -0.3
986,385 + -1.2
986,386 - -1.2
986,477 + -3.7
986,478 - +0.3
986,500 + -3.1
986,500 + -0.7
986,502 + -0.2
986,502 + -0.2
986,502 + -1.2
986,502 + -0.7
986,502 + -3.6
986,502 + -3.2
986,503 - +1.3
986,510 + -3.1
986,510 + -1.4
986,511 - +1.5
986,513 + +1.4
986,513 + -0.3
986,513 + -0.9
986,513 + +0.4
986,514 - +1.4
986,514 - -0.1
986,514 - +0.3
986,514 - +1.5
986,555 + -1.7
986,555 + -0.1
986,655 + +0.3
986,814 + PS417_04440 0.38 -1.0
987,055 - PS417_04440 0.81 +2.7
987,055 - PS417_04440 0.81 +2.4
987,105 + +2.3
987,114 + +1.4
987,138 + -0.9
987,156 + -2.6
987,156 + +0.3
987,156 + +0.8
987,157 - +1.4
987,157 - +1.3
987,303 + PS417_04445 0.30 -3.2
987,303 + PS417_04445 0.30 +0.3
987,303 + PS417_04445 0.30 -2.1
987,303 + PS417_04445 0.30 -0.6
987,304 - PS417_04445 0.30 -2.0
987,304 - PS417_04445 0.30 +2.1
987,304 - PS417_04445 0.30 +1.4
987,304 - PS417_04445 0.30 -0.8
987,597 + -2.1
987,632 + +1.1
987,679 - -3.5
987,818 - PS417_04450 0.31 -1.4
987,818 - PS417_04450 0.31 +1.1
987,818 - PS417_04450 0.31 -1.3
987,989 + PS417_04450 0.67 -0.5
987,990 - PS417_04450 0.67 -1.9
987,998 - PS417_04450 0.69 +0.5
988,038 - PS417_04450 0.77 -0.5
988,076 + PS417_04450 0.85 +1.1
988,076 + PS417_04450 0.85 +0.8
988,076 + PS417_04450 0.85 -1.4
988,076 + PS417_04450 0.85 -1.6
988,077 - PS417_04450 0.85 +0.0
988,077 - PS417_04450 0.85 +0.4
988,081 - PS417_04450 0.86 -2.0
988,095 - PS417_04450 0.88 +0.7
988,108 + -0.6
988,108 + -2.9
988,109 - -1.3
988,109 - -3.5
988,122 + -0.7
988,122 + -2.1

Or see this region's nucleotide sequence