Strain Fitness in Pseudomonas simiae WCS417 around PS417_04060

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04050 and PS417_04055 are separated by 10 nucleotidesPS417_04055 and PS417_04060 are separated by 10 nucleotidesPS417_04060 and PS417_04065 are separated by 76 nucleotides PS417_04050: PS417_04050 - peptide ABC transporter ATP-binding protein, at 908,209 to 909,177 _04050 PS417_04055: PS417_04055 - peptide transporter, at 909,188 to 910,099 _04055 PS417_04060: PS417_04060 - dipeptide ABC transporter, permease component (from data), at 910,110 to 911,120 _04060 PS417_04065: PS417_04065 - peptide ABC transporter substrate-binding protein, at 911,197 to 912,795 _04065 Position (kb) 910 911 912Strain fitness (log2 ratio) -3 -2 -1 0 1at 909.315 kb on + strand, within PS417_04055at 909.365 kb on + strand, within PS417_04055at 909.522 kb on + strand, within PS417_04055at 909.523 kb on - strand, within PS417_04055at 909.570 kb on + strand, within PS417_04055at 909.570 kb on + strand, within PS417_04055at 909.916 kb on - strand, within PS417_04055at 909.932 kb on - strand, within PS417_04055at 910.423 kb on + strand, within PS417_04060at 910.424 kb on - strand, within PS417_04060at 910.933 kb on + strand, within PS417_04060at 910.946 kb on + strand, within PS417_04060at 911.114 kb on + strandat 911.131 kb on - strandat 911.223 kb on + strandat 911.346 kb on - strandat 911.581 kb on - strand, within PS417_04065at 911.900 kb on + strand, within PS417_04065at 911.901 kb on - strand, within PS417_04065at 911.901 kb on - strand, within PS417_04065at 912.061 kb on - strand, within PS417_04065at 912.113 kb on + strand, within PS417_04065at 912.114 kb on - strand, within PS417_04065

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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909,315 + PS417_04055 0.14 -1.3
909,365 + PS417_04055 0.19 +0.6
909,522 + PS417_04055 0.37 -0.3
909,523 - PS417_04055 0.37 -0.7
909,570 + PS417_04055 0.42 -0.7
909,570 + PS417_04055 0.42 -0.1
909,916 - PS417_04055 0.80 +1.1
909,932 - PS417_04055 0.82 -3.4
910,423 + PS417_04060 0.31 +0.1
910,424 - PS417_04060 0.31 -3.1
910,933 + PS417_04060 0.81 -0.9
910,946 + PS417_04060 0.83 -1.1
911,114 + +0.1
911,131 - -2.0
911,223 + +0.2
911,346 - +0.3
911,581 - PS417_04065 0.24 +0.4
911,900 + PS417_04065 0.44 -2.9
911,901 - PS417_04065 0.44 +1.6
911,901 - PS417_04065 0.44 -2.8
912,061 - PS417_04065 0.54 +1.0
912,113 + PS417_04065 0.57 -0.3
912,114 - PS417_04065 0.57 -0.2

Or see this region's nucleotide sequence